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Geant4/examples/advanced/hadrontherapy/src/HadrontherapyDetectorConstruction.cc

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Differences between /examples/advanced/hadrontherapy/src/HadrontherapyDetectorConstruction.cc (Version 11.3.0) and /examples/advanced/hadrontherapy/src/HadrontherapyDetectorConstruction.cc (Version 9.4.p4)


  1 //                                                  1 //
  2 // *******************************************      2 // ********************************************************************
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  4 // *                                                4 // *                                                                  *
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 15 // * use.  Please see the license in the file      15 // * use.  Please see the license in the file  LICENSE  and URL above *
 16 // * for the full disclaimer and the limitatio     16 // * for the full disclaimer and the limitation of liability.         *
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 19 // * technical work of the GEANT4 collaboratio     19 // * technical work of the GEANT4 collaboration.                      *
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 23 // * acceptance of all terms of the Geant4 Sof     23 // * acceptance of all terms of the Geant4 Software license.          *
 24 // *******************************************     24 // ********************************************************************
 25 //                                                 25 //
 26 // Hadrontherapy advanced example for Geant4   <<  26 // This is the *BASIC* version of Hadrontherapy, a Geant4-based application
 27 // See more at: https://twiki.cern.ch/twiki/bi <<  27 // See more at: http://g4advancedexamples.lngs.infn.it/Examples/hadrontherapy
                                                   >>  28 //
                                                   >>  29 // Visit the Hadrontherapy web site (http://www.lns.infn.it/link/Hadrontherapy) to request 
                                                   >>  30 // the *COMPLETE* version of this program, together with its documentation;
                                                   >>  31 // Hadrontherapy (both basic and full version) are supported by the Italian INFN
                                                   >>  32 // Institute in the framework of the MC-INFN Group
                                                   >>  33 //
                                                   >>  34 
 28                                                    35 
 29 #include "G4UnitsTable.hh"                     << 
 30 #include "G4SDManager.hh"                          36 #include "G4SDManager.hh"
 31 #include "G4RunManager.hh"                         37 #include "G4RunManager.hh"
 32 #include "G4GeometryManager.hh"                    38 #include "G4GeometryManager.hh"
 33 #include "G4SolidStore.hh"                         39 #include "G4SolidStore.hh"
 34 #include "G4PhysicalVolumeStore.hh"                40 #include "G4PhysicalVolumeStore.hh"
 35 #include "G4LogicalVolumeStore.hh"                 41 #include "G4LogicalVolumeStore.hh"
 36 #include "G4Box.hh"                                42 #include "G4Box.hh"
 37 #include "G4LogicalVolume.hh"                      43 #include "G4LogicalVolume.hh"
 38 #include "G4ThreeVector.hh"                        44 #include "G4ThreeVector.hh"
 39 #include "G4PVPlacement.hh"                        45 #include "G4PVPlacement.hh"
 40 #include "globals.hh"                              46 #include "globals.hh"
 41 #include "G4Transform3D.hh"                        47 #include "G4Transform3D.hh"
 42 #include "G4RotationMatrix.hh"                     48 #include "G4RotationMatrix.hh"
 43 #include "G4Colour.hh"                             49 #include "G4Colour.hh"
 44 #include "G4UserLimits.hh"                         50 #include "G4UserLimits.hh"
 45 #include "G4UnitsTable.hh"                         51 #include "G4UnitsTable.hh"
 46 #include "G4VisAttributes.hh"                      52 #include "G4VisAttributes.hh"
 47 #include "G4NistManager.hh"                        53 #include "G4NistManager.hh"
                                                   >>  54 
 48 #include "HadrontherapyDetectorConstruction.hh     55 #include "HadrontherapyDetectorConstruction.hh"
 49 #include "HadrontherapyDetectorROGeometry.hh"      56 #include "HadrontherapyDetectorROGeometry.hh"
 50 #include "HadrontherapyDetectorMessenger.hh"       57 #include "HadrontherapyDetectorMessenger.hh"
 51 #include "HadrontherapyDetectorSD.hh"              58 #include "HadrontherapyDetectorSD.hh"
 52 #include "HadrontherapyMatrix.hh"                  59 #include "HadrontherapyMatrix.hh"
 53 #include "HadrontherapyLet.hh"                 <<  60 #include "HadrontherapyAnalysisManager.hh"
 54 #include "PassiveProtonBeamLine.hh"            << 
 55 #include "BESTPassiveProtonBeamLine.hh"        << 
 56 #include "HadrontherapyMatrix.hh"              << 
 57                                                << 
 58 #include "HadrontherapyRBE.hh"                 << 
 59 #include "G4SystemOfUnits.hh"                  << 
 60                                                    61 
 61 #include <cmath>                                   62 #include <cmath>
 62                                                    63 
 63                                                << 
 64                                                << 
 65 HadrontherapyDetectorConstruction* Hadronthera << 
 66 //////////////////////////////////////////////     64 /////////////////////////////////////////////////////////////////////////////
 67 HadrontherapyDetectorConstruction::Hadronthera     65 HadrontherapyDetectorConstruction::HadrontherapyDetectorConstruction(G4VPhysicalVolume* physicalTreatmentRoom)
 68 : motherPhys(physicalTreatmentRoom), // pointe <<  66   : motherPhys(physicalTreatmentRoom), // pointer to WORLD volume 
 69 detectorSD(0), detectorROGeometry(0), matrix(0 <<  67     detectorSD(0), detectorROGeometry(0), matrix(0), 
 70 phantom(0), detector(0),                       <<  68     phantom(0), detector(0),
 71 phantomLogicalVolume(0), detectorLogicalVolume <<  69     phantomLogicalVolume(0), detectorLogicalVolume(0), 
 72 phantomPhysicalVolume(0), detectorPhysicalVolu <<  70     phantomPhysicalVolume(0), detectorPhysicalVolume(0),
 73 aRegion(0)                                     <<  71     aRegion(0)
 74 {                                              <<  72 {
 75                                                <<  73   HadrontherapyAnalysisManager::GetInstance();
 76                                                <<  74 
 77     /* NOTE! that the HadrontherapyDetectorCon <<  75   /* NOTE! that the HadrontherapyDetectorConstruction class
 78      * does NOT inherit from G4VUserDetectorCo <<  76    * does NOT inherit from G4VUserDetectorConstruction G4 class
 79      * So the Construct() mandatory virtual me <<  77    * So the Construct() mandatory virtual method is inside another geometric class
 80      * like the passiveProtonBeamLIne, ...     <<  78    * like the passiveProtonBeamLIne, ...
 81      */                                        <<  79    */
 82                                                <<  80 
 83     // Messenger to change parameters of the p <<  81   // Messenger to change parameters of the phantom/detector geometry
 84     detectorMessenger = new HadrontherapyDetec <<  82   detectorMessenger = new HadrontherapyDetectorMessenger(this);
 85                                                <<  83 
 86     // Default detector voxels size            <<  84   // Default detector voxels size
 87     // 200 slabs along the beam direction (X)  <<  85   // 200 slabs along the beam direction (X)
 88     sizeOfVoxelAlongX = 200 *um;               <<  86   sizeOfVoxelAlongX = 200 *um; 
 89     sizeOfVoxelAlongY = 4 *cm;                 <<  87   sizeOfVoxelAlongY = 4 *cm; 
 90     sizeOfVoxelAlongZ = 4 *cm;                 <<  88   sizeOfVoxelAlongZ = 4 *cm; 
 91                                                <<  89 
 92     // Define here the material of the water p <<  90   // Define here the material of the water phantom and of the detector
 93     SetPhantomMaterial("G4_WATER");            <<  91   SetPhantomMaterial("G4_WATER"); 
 94     // Construct geometry (messenger commands) <<  92   // Construct geometry (messenger commands)
 95     // SetDetectorSize(4.*cm, 4.*cm, 4.*cm);   <<  93   SetDetectorSize(4.*cm, 4.*cm, 4.*cm);
 96     SetDetectorSize(4. *cm, 4. *cm, 4. *cm);   <<  94   SetPhantomSize(40. *cm, 40. *cm, 40. *cm);
 97     SetPhantomSize(40. *cm, 40. *cm, 40. *cm); <<  95   SetPhantomPosition(G4ThreeVector(20. *cm, 0. *cm, 0. *cm));
 98                                                <<  96   SetDetectorToPhantomPosition(G4ThreeVector(0. *cm, 18. *cm, 18. *cm));
 99     SetPhantomPosition(G4ThreeVector(20. *cm,  <<  97 
100     SetDetectorToPhantomPosition(G4ThreeVector <<  98 
101     SetDetectorPosition();                     <<  99   // Write virtual parameters to the real ones and check for consistency      
102     //GetDetectorToWorldPosition();            << 100   UpdateGeometry();
103                                                << 
104     // Write virtual parameters to the real on << 
105     UpdateGeometry();                          << 
106                                                << 
107                                                << 
108                                                << 
109 }                                                 101 }
110                                                   102 
111 //////////////////////////////////////////////    103 /////////////////////////////////////////////////////////////////////////////
112 HadrontherapyDetectorConstruction::~Hadronther    104 HadrontherapyDetectorConstruction::~HadrontherapyDetectorConstruction()
113 {                                              << 105 { 
114     delete detectorROGeometry;                 << 106     delete detectorROGeometry;  
115     delete matrix;                             << 107     delete matrix;  
116     delete detectorMessenger;                     108     delete detectorMessenger;
117 }                                                 109 }
118                                                   110 
119 //////////////////////////////////////////////    111 /////////////////////////////////////////////////////////////////////////////
120 HadrontherapyDetectorConstruction* Hadronthera << 112 // ConstructPhantom() is the method that reconstuct a water box (called phantom 
121 {                                              << 113 // (or water phantom) in the usual Medical physicists slang). 
122     return instance;                           << 114 // A water phantom can be considered a good
123 }                                              << 115 // approximation of a an human body. 
124                                                << 
125 ////////////////////////////////////////////// << 
126 // ConstructPhantom() is the method that const << 
127 // (or water phantom) in the usual Medical phy << 
128 // A water phantom can be considered a good ap << 
129 void HadrontherapyDetectorConstruction::Constr    116 void HadrontherapyDetectorConstruction::ConstructPhantom()
130 {                                                 117 {
131     // Definition of the solid volume of the P    118     // Definition of the solid volume of the Phantom
132     phantom = new G4Box("Phantom",             << 119     phantom = new G4Box("Phantom", 
133                         phantomSizeX/2,        << 120       phantomSizeX/2, 
134                         phantomSizeY/2,        << 121       phantomSizeY/2, 
135                         phantomSizeZ/2);       << 122       phantomSizeZ/2);
136                                                << 123     
137     // Definition of the logical volume of the << 124 // Definition of the logical volume of the Phantom
138     phantomLogicalVolume = new G4LogicalVolume << 125     phantomLogicalVolume = new G4LogicalVolume(phantom, 
139                                                << 126                phantomMaterial, 
140                                                << 127                "phantomLog", 0, 0, 0);
141                                                << 128   
142     // Definition of the physics volume of the    129     // Definition of the physics volume of the Phantom
143     phantomPhysicalVolume = new G4PVPlacement(    130     phantomPhysicalVolume = new G4PVPlacement(0,
144                                                << 131                                       phantomPosition,
145                                                << 132               "phantomPhys",
146                                                << 133               phantomLogicalVolume,
147                                                << 134               motherPhys,
148                                                << 135               false,
149                                                << 136               0);
150                                                << 137 
151     // Visualisation attributes of the phantom << 138 // Visualisation attributes of the phantom
152     red = new G4VisAttributes(G4Colour(255/255    139     red = new G4VisAttributes(G4Colour(255/255., 0/255. ,0/255.));
153     red -> SetVisibility(true);                   140     red -> SetVisibility(true);
154     red -> SetForceSolid(true);                   141     red -> SetForceSolid(true);
155     red -> SetForceWireframe(true);            << 142     //red -> SetForceWireframe(true);
156     phantomLogicalVolume -> SetVisAttributes(r    143     phantomLogicalVolume -> SetVisAttributes(red);
157 }                                                 144 }
158                                                   145 
159 //////////////////////////////////////////////    146 /////////////////////////////////////////////////////////////////////////////
160 // ConstructDetector() is the method the recon << 147 // ConstructDetector() it the method the reconstruct a detector region 
161 // inside the water phantom. It is a volume, l << 148 // inside the water phantom. It is a volume, located inside the water phantom
                                                   >> 149 // and with two coincident faces:
162 //                                                150 //
163 //           **************************           151 //           **************************
164 //           *    water phantom       *        << 152 //           *   water phantom        *
165 //           *                        *           153 //           *                        *
166 //           *                        *           154 //           *                        *
167 //           *---------------         *           155 //           *---------------         *
168 //  Beam     *              -         *           156 //  Beam     *              -         *
169 //  ----->   * detector     -         *           157 //  ----->   * detector     -         *
170 //           *              -         *           158 //           *              -         *
171 //           *---------------         *           159 //           *---------------         *
172 //           *                        *           160 //           *                        *
173 //           *                        *           161 //           *                        *
174 //           *                        *           162 //           *                        *
175 //           **************************           163 //           **************************
176 //                                                164 //
177 // The detector can be dived in slices or voxe << 165 // The detector is the volume that can be dived in slices or voxelized
178 // and inside it different quantities (dose di << 166 // and in it we can collect a number of usefull information:
179 // can be stored.                              << 167 // dose distribution, fluence distribution, LET and so on
180 void HadrontherapyDetectorConstruction::Constr    168 void HadrontherapyDetectorConstruction::ConstructDetector()
181                                                << 
182 {                                                 169 {
                                                   >> 170 
183     // Definition of the solid volume of the D    171     // Definition of the solid volume of the Detector
184     detector = new G4Box("Detector",           << 172     detector = new G4Box("Detector", 
185                                                << 173        detectorSizeX/2, 
186                          phantomSizeX/2,       << 174        detectorSizeY/2, 
187                                                << 175        detectorSizeZ/2);
188                          phantomSizeY/2,       << 
189                                                << 
190                          phantomSizeZ/2);      << 
191                                                   176     
192     // Definition of the logic volume of the P    177     // Definition of the logic volume of the Phantom
193     detectorLogicalVolume = new G4LogicalVolum    178     detectorLogicalVolume = new G4LogicalVolume(detector,
194                                                << 179             detectorMaterial,
195                                                << 180             "DetectorLog",
196                                                << 181             0,0,0);
197     // Definition of the physical volume of th << 182 // Definition of the physical volume of the Phantom 
198     detectorPhysicalVolume = new G4PVPlacement << 183     detectorPhysicalVolume = new G4PVPlacement(0, 
199                                                << 184                  detectorPosition, // Setted by displacement 
200                                                << 185                  "DetectorPhys", 
201                                                << 186                  detectorLogicalVolume, 
202                                                << 187                  phantomPhysicalVolume, 
203                                                << 188                  false,0);
204                                                << 189 
205     // Visualisation attributes of the detecto << 190 // Visualisation attributes of the detector 
206     skyBlue = new G4VisAttributes( G4Colour(13    191     skyBlue = new G4VisAttributes( G4Colour(135/255. , 206/255. ,  235/255. ));
207     skyBlue -> SetVisibility(true);               192     skyBlue -> SetVisibility(true);
208     skyBlue -> SetForceSolid(true);               193     skyBlue -> SetForceSolid(true);
209     //skyBlue -> SetForceWireframe(true);         194     //skyBlue -> SetForceWireframe(true);
210     detectorLogicalVolume -> SetVisAttributes(    195     detectorLogicalVolume -> SetVisAttributes(skyBlue);
211                                                << 196 
212     // **************                          << 197   // **************
213     // **************                          << 198   // Cut per Region
214     // Cut per Region                          << 199   // **************
215     // **************                          << 200   
216     //                                         << 201   // A smaller cut is fixed in the phantom to calculate the energy deposit with the
217     // A smaller cut is fixed in the phantom t << 202   // required accuracy 
218     // required accuracy                       << 
219     if (!aRegion)                                 203     if (!aRegion)
220     {                                             204     {
221         aRegion = new G4Region("DetectorLog"); << 205   aRegion = new G4Region("DetectorLog");
222         detectorLogicalVolume -> SetRegion(aRe << 206   detectorLogicalVolume -> SetRegion(aRegion);
223         aRegion->AddRootLogicalVolume( detecto << 207   aRegion -> AddRootLogicalVolume(detectorLogicalVolume);
224     }                                             208     }
225 }                                              << 
226                                                   209 
227 ////////////////////////////////////////////// << 
228 void HadrontherapyDetectorConstruction::Initia << 
229                                                << 
230                                                << 
231                                                << 
232 {                                              << 
233     RO->Initialize(detectorToWorldPosition,    << 
234                    detectorSizeX/2,            << 
235                    detectorSizeY/2,            << 
236                    detectorSizeZ/2,            << 
237                    numberOfVoxelsAlongX,       << 
238                    numberOfVoxelsAlongY,       << 
239                    numberOfVoxelsAlongZ);      << 
240 }                                              << 
241 void HadrontherapyDetectorConstruction::Virtua << 
242 {                                              << 
243                                                << 
244     //Virtual  plane                           << 
245     VirtualLayerPosition = G4ThreeVector(0*cm, << 
246     NewSource= Varbool;                        << 
247     if(NewSource == true)                      << 
248     {                                          << 
249        // std::cout<<"trr"<<std::endl;         << 
250         G4Material* airNist =  G4NistManager:: << 
251                                                << 
252         solidVirtualLayer = new G4Box("Virtual << 
253                                       1.*um,   << 
254                                       20.*cm,  << 
255                                       40.*cm); << 
256                                                << 
257         logicVirtualLayer = new G4LogicalVolum << 
258                                                << 
259                                                << 
260                                                << 
261                                                << 
262         physVirtualLayer= new G4PVPlacement(0, << 
263                                             "V << 
264                                             lo << 
265                                             mo << 
266                                             fa << 
267                                             0) << 
268                                                << 
269         logicVirtualLayer -> SetVisAttributes( << 
270     }                                          << 
271                                                << 
272                                                << 
273                                                << 
274                                                << 
275 }                                                 210 }
276                                                   211 
                                                   >> 212 /////////////////////////////////////////////////////////////////////////////
277                                                   213 
278 ////////////////////////////////////////////// << 214 void  HadrontherapyDetectorConstruction::ConstructSensitiveDetector(G4ThreeVector detectorToWorldPosition)
                                                   >> 215 {  
                                                   >> 216     // Install new Sensitive Detector and ROGeometry 
                                                   >> 217     delete detectorROGeometry; // this should be safe in C++ also if we have a NULL pointer
                                                   >> 218     //if (detectorSD) detectorSD->PrintAll();
                                                   >> 219     //delete detectorSD;
                                                   >> 220     // Sensitive Detector and ReadOut geometry definition
                                                   >> 221     G4SDManager* sensitiveDetectorManager = G4SDManager::GetSDMpointer();
                                                   >> 222 
                                                   >> 223     static G4String sensitiveDetectorName = "Detector"; 
                                                   >> 224     if (!detectorSD)
                                                   >> 225   {
                                                   >> 226       // The sensitive detector is instantiated
                                                   >> 227       detectorSD = new HadrontherapyDetectorSD(sensitiveDetectorName);
                                                   >> 228   }
                                                   >> 229     // The Read Out Geometry is instantiated
                                                   >> 230     static G4String ROGeometryName = "DetectorROGeometry";
                                                   >> 231     detectorROGeometry = new HadrontherapyDetectorROGeometry(ROGeometryName,
                                                   >> 232                   detectorToWorldPosition,
                                                   >> 233                   detectorSizeX/2,
                                                   >> 234                   detectorSizeY/2,
                                                   >> 235                   detectorSizeZ/2,
                                                   >> 236                   numberOfVoxelsAlongX,
                                                   >> 237                   numberOfVoxelsAlongY,
                                                   >> 238                   numberOfVoxelsAlongZ);
                                                   >> 239 
                                                   >> 240     G4cout << "Instantiating new Read Out Geometry \"" << ROGeometryName << "\""<< G4endl;
                                                   >> 241     // This will invoke Build() HadrontherapyDetectorROGeometry virtual method 
                                                   >> 242     detectorROGeometry -> BuildROGeometry();
                                                   >> 243     // Attach ROGeometry to SDetector
                                                   >> 244     detectorSD -> SetROgeometry(detectorROGeometry);
                                                   >> 245     //sensitiveDetectorManager -> Activate(sensitiveDetectorName, true);
                                                   >> 246     if (!sensitiveDetectorManager -> FindSensitiveDetector(sensitiveDetectorName, false))
                                                   >> 247   {
                                                   >> 248       G4cout << "Registering new DetectorSD \"" << sensitiveDetectorName << "\""<< G4endl;
                                                   >> 249       // Register user SD
                                                   >> 250       sensitiveDetectorManager -> AddNewDetector(detectorSD);
                                                   >> 251       // Attach SD to detector logical volume
                                                   >> 252       detectorLogicalVolume -> SetSensitiveDetector(detectorSD);
                                                   >> 253   }
                                                   >> 254 }
279 void  HadrontherapyDetectorConstruction::Param    255 void  HadrontherapyDetectorConstruction::ParametersCheck()
280 {                                                 256 {
281     // Check phantom/detector sizes & relative    257     // Check phantom/detector sizes & relative position
282     if (!IsInside(detectorSizeX,               << 258     if (!IsInside(detectorSizeX, 
283                   detectorSizeY,               << 259     detectorSizeY, 
284                   detectorSizeZ,               << 260     detectorSizeZ,
285                   phantomSizeX,                << 261     phantomSizeX,
286                   phantomSizeY,                << 262     phantomSizeY,
287                   phantomSizeZ,                << 263     phantomSizeZ,
288                   detectorToPhantomPosition    << 264     detectorToPhantomPosition
289                   ))                           << 265     ))
290         G4Exception("HadrontherapyDetectorCons << 266   G4Exception("Error at HadrontherapyDetectorConstruction::ParametersCheck(). Detector is not fully inside Phantom!");
291                                                << 267 
292     // Check Detector sizes respect to the vox    268     // Check Detector sizes respect to the voxel ones
293                                                << 269 
294     if ( detectorSizeX < sizeOfVoxelAlongX) {     270     if ( detectorSizeX < sizeOfVoxelAlongX) {
295         G4Exception("HadrontherapyDetectorCons << 271   G4Exception("Error at HadrontherapyDetectorConstruction::ParametersCheck(). Detector X size must be bigger or equal than that of Voxel X");
296     }                                             272     }
297     if ( detectorSizeY < sizeOfVoxelAlongY) {     273     if ( detectorSizeY < sizeOfVoxelAlongY) {
298         G4Exception(" HadrontherapyDetectorCon << 274   G4Exception("Error at HadrontherapyDetectorConstruction::ParametersCheck(). Detector Y size must be bigger or equal than that of Voxel Y");
299     }                                             275     }
300     if ( detectorSizeZ < sizeOfVoxelAlongZ) {     276     if ( detectorSizeZ < sizeOfVoxelAlongZ) {
301         G4Exception(" HadrontherapyDetectorCon << 277   G4Exception("Error at HadrontherapyDetectorConstruction::ParametersCheck(). Detector Z size must be bigger or equal than that of Voxel Z");
302     }                                             278     }
                                                   >> 279 
303 }                                                 280 }
                                                   >> 281 /////////////////
                                                   >> 282 // MESSENGERS //
                                                   >> 283 ////////////////
304                                                   284 
305 ////////////////////////////////////////////// << 
306 G4bool HadrontherapyDetectorConstruction::SetP    285 G4bool HadrontherapyDetectorConstruction::SetPhantomMaterial(G4String material)
307 {                                                 286 {
308                                                << 287 
309     if (G4Material* pMat = G4NistManager::Inst    288     if (G4Material* pMat = G4NistManager::Instance()->FindOrBuildMaterial(material, false) )
310     {                                             289     {
311         phantomMaterial  = pMat;               << 290   phantomMaterial  = pMat;
312         detectorMaterial = pMat;               << 291   detectorMaterial = pMat;
313         if (detectorLogicalVolume && phantomLo << 292   if (detectorLogicalVolume && phantomLogicalVolume) 
314         {                                      << 293   {
315             detectorLogicalVolume -> SetMateri << 294       detectorLogicalVolume -> SetMaterial(pMat); 
316             phantomLogicalVolume ->  SetMateri << 295       phantomLogicalVolume ->  SetMaterial(pMat);
317                                                << 296 
318             G4RunManager::GetRunManager() -> P << 297       G4RunManager::GetRunManager() -> PhysicsHasBeenModified();
319             G4RunManager::GetRunManager() -> G << 298       G4RunManager::GetRunManager() -> GeometryHasBeenModified();
320             G4cout << "The material of Phantom << 299       G4cout << "The material of Phantom/Detector has been changed to " << material << G4endl;
321         }                                      << 300   }
322     }                                             301     }
323     else                                          302     else
324     {                                             303     {
325         G4cout << "WARNING: material \"" << ma << 304   G4cout << "WARNING: material \"" << material << "\" doesn't exist in NIST elements/materials"
326         " table [located in $G4INSTALL/source/ << 305       " table [located in $G4INSTALL/source/materials/src/G4NistMaterialBuilder.cc]" << G4endl; 
327         G4cout << "Use command \"/parameter/ni << 306   G4cout << "Use command \"/parameter/nist\" to see full materials list!" << G4endl; 
328         return false;                          << 307   return false;
329     }                                             308     }
330                                                << 309 
331     return true;                                  310     return true;
332 }                                                 311 }
333 //////////////////////////////////////////////    312 /////////////////////////////////////////////////////////////////////////////
334 void HadrontherapyDetectorConstruction::SetPha    313 void HadrontherapyDetectorConstruction::SetPhantomSize(G4double sizeX, G4double sizeY, G4double sizeZ)
335 {                                                 314 {
336     if (sizeX > 0.) phantomSizeX = sizeX;         315     if (sizeX > 0.) phantomSizeX = sizeX;
337     if (sizeY > 0.) phantomSizeY = sizeY;         316     if (sizeY > 0.) phantomSizeY = sizeY;
338     if (sizeZ > 0.) phantomSizeZ = sizeZ;         317     if (sizeZ > 0.) phantomSizeZ = sizeZ;
339 }                                                 318 }
340                                                << 319 /////////////////////////////////////////////////////////////////////////////
341 //////////////////////////////////////////////    320 /////////////////////////////////////////////////////////////////////////////
342 void HadrontherapyDetectorConstruction::SetDet    321 void HadrontherapyDetectorConstruction::SetDetectorSize(G4double sizeX, G4double sizeY, G4double sizeZ)
343 {                                                 322 {
344     if (sizeX > 0.) {detectorSizeX = sizeX;}      323     if (sizeX > 0.) {detectorSizeX = sizeX;}
345     if (sizeY > 0.) {detectorSizeY = sizeY;}      324     if (sizeY > 0.) {detectorSizeY = sizeY;}
346     if (sizeZ > 0.) {detectorSizeZ = sizeZ;}      325     if (sizeZ > 0.) {detectorSizeZ = sizeZ;}
347     SetVoxelSize(sizeOfVoxelAlongX, sizeOfVoxe    326     SetVoxelSize(sizeOfVoxelAlongX, sizeOfVoxelAlongY, sizeOfVoxelAlongZ);
348 }                                                 327 }
349                                                << 
350 //////////////////////////////////////////////    328 /////////////////////////////////////////////////////////////////////////////
                                                   >> 329 
351 void HadrontherapyDetectorConstruction::SetVox    330 void HadrontherapyDetectorConstruction::SetVoxelSize(G4double sizeX, G4double sizeY, G4double sizeZ)
352 {                                                 331 {
353     if (sizeX > 0.) {sizeOfVoxelAlongX = sizeX    332     if (sizeX > 0.) {sizeOfVoxelAlongX = sizeX;}
354     if (sizeY > 0.) {sizeOfVoxelAlongY = sizeY    333     if (sizeY > 0.) {sizeOfVoxelAlongY = sizeY;}
355     if (sizeZ > 0.) {sizeOfVoxelAlongZ = sizeZ    334     if (sizeZ > 0.) {sizeOfVoxelAlongZ = sizeZ;}
356 }                                                 335 }
357                                                << 
358 ////////////////////////////////////////////// << 
359 void HadrontherapyDetectorConstruction::SetPha    336 void HadrontherapyDetectorConstruction::SetPhantomPosition(G4ThreeVector pos)
360 {                                                 337 {
361     phantomPosition = pos;                        338     phantomPosition = pos;
362 }                                                 339 }
363                                                   340 
364 //////////////////////////////////////////////    341 /////////////////////////////////////////////////////////////////////////////
365 void HadrontherapyDetectorConstruction::SetDet    342 void HadrontherapyDetectorConstruction::SetDetectorToPhantomPosition(G4ThreeVector displ)
366 {                                                 343 {
367     detectorToPhantomPosition = displ;            344     detectorToPhantomPosition = displ;
368 }                                                 345 }
369                                                << 
370 void HadrontherapyDetectorConstruction::SetVir << 
371 {                                              << 
372                                                << 
373     VirtualLayerPosition = position;           << 
374     physVirtualLayer->SetTranslation(VirtualLa << 
375                                                << 
376 }                                              << 
377 //////////////////////////////////////////////    346 /////////////////////////////////////////////////////////////////////////////
378 void HadrontherapyDetectorConstruction::Update    347 void HadrontherapyDetectorConstruction::UpdateGeometry()
379 {                                                 348 {
380     /*                                         << 349     /* 
381      * Check parameters consistency               350      * Check parameters consistency
382      */                                           351      */
383     ParametersCheck();                            352     ParametersCheck();
384                                                << 353 
385     G4GeometryManager::GetInstance() -> OpenGe    354     G4GeometryManager::GetInstance() -> OpenGeometry();
386     if (phantom)                                  355     if (phantom)
387     {                                             356     {
388         phantom -> SetXHalfLength(phantomSizeX << 357   phantom -> SetXHalfLength(phantomSizeX/2);
389         phantom -> SetYHalfLength(phantomSizeY << 358   phantom -> SetYHalfLength(phantomSizeY/2);
390         phantom -> SetZHalfLength(phantomSizeZ << 359   phantom -> SetZHalfLength(phantomSizeZ/2);
391                                                << 360   phantomPhysicalVolume -> SetTranslation(phantomPosition);
392         phantomPhysicalVolume -> SetTranslatio << 
393     }                                             361     }
394     else   ConstructPhantom();                    362     else   ConstructPhantom();
395                                                << 363 
396                                                << 364     // Get the center of the detector 
397     // Get the center of the detector          << 
398     SetDetectorPosition();                        365     SetDetectorPosition();
399     if (detector)                                 366     if (detector)
400     {                                             367     {
401                                                << 368   detector -> SetXHalfLength(detectorSizeX/2);
402         detector -> SetXHalfLength(detectorSiz << 369   detector -> SetYHalfLength(detectorSizeY/2);
403         detector -> SetYHalfLength(detectorSiz << 370   detector -> SetZHalfLength(detectorSizeZ/2);
404         detector -> SetZHalfLength(detectorSiz << 371   detectorPhysicalVolume -> SetTranslation(detectorPosition);
405                                                << 
406         detectorPhysicalVolume -> SetTranslati << 
407     }                                             372     }
408     else    ConstructDetector();                  373     else    ConstructDetector();
409                                                << 374 
410     //std::cout<<NewSource<<std::endl;         << 375     // Round to nearest integer number of voxel 
411     /*if(NewSource)                            << 376     numberOfVoxelsAlongX = lrint(detectorSizeX / sizeOfVoxelAlongX);
412      {                                         << 
413      std::cout<<"via"<<std::endl;              << 
414      }*/                                       << 
415                                                << 
416                                                << 
417     // std::cout<<"i"<<std::endl;              << 
418     // std::cout<<VirtualLayerPosition<<std::e << 
419     // physVirtualLayer->SetTranslation(Virtua << 
420                                                << 
421                                                << 
422                                                << 
423                                                << 
424                                                << 
425     // Round to nearest integer number of voxe << 
426                                                << 
427     numberOfVoxelsAlongX = G4lrint(detectorSiz << 
428     sizeOfVoxelAlongX = ( detectorSizeX / numb    377     sizeOfVoxelAlongX = ( detectorSizeX / numberOfVoxelsAlongX );
429     numberOfVoxelsAlongY = G4lrint(detectorSiz << 378 
                                                   >> 379     numberOfVoxelsAlongY = lrint(detectorSizeY / sizeOfVoxelAlongY);
430     sizeOfVoxelAlongY = ( detectorSizeY / numb    380     sizeOfVoxelAlongY = ( detectorSizeY / numberOfVoxelsAlongY );
431     numberOfVoxelsAlongZ = G4lrint(detectorSiz << 381 
                                                   >> 382     numberOfVoxelsAlongZ = lrint(detectorSizeZ / sizeOfVoxelAlongZ);
432     sizeOfVoxelAlongZ = ( detectorSizeZ / numb    383     sizeOfVoxelAlongZ = ( detectorSizeZ / numberOfVoxelsAlongZ );
433     PassiveProtonBeamLine *ppbl= (PassiveProto << 384 
434                                                << 385     //G4cout << "*************** DetectorToWorldPosition " << GetDetectorToWorldPosition()/cm << "\n";
435     G4RunManager::GetRunManager()->GetUserDete << 386     ConstructSensitiveDetector(GetDetectorToWorldPosition());
436                                                << 387 
437     HadrontherapyDetectorROGeometry* RO = (Had << 
438                                                << 
439     //Set parameters, either for the Construct << 
440     RO->Initialize(GetDetectorToWorldPosition( << 
441                    detectorSizeX/2,            << 
442                    detectorSizeY/2,            << 
443                    detectorSizeZ/2,            << 
444                    numberOfVoxelsAlongX,       << 
445                    numberOfVoxelsAlongY,       << 
446                    numberOfVoxelsAlongZ);      << 
447                                                << 
448     //This method below has an effect only if  << 
449     RO->UpdateROGeometry();                    << 
450                                                << 
451                                                << 
452                                                << 
453     volumeOfVoxel = sizeOfVoxelAlongX * sizeOf    388     volumeOfVoxel = sizeOfVoxelAlongX * sizeOfVoxelAlongY * sizeOfVoxelAlongZ;
454     massOfVoxel = detectorMaterial -> GetDensi    389     massOfVoxel = detectorMaterial -> GetDensity() * volumeOfVoxel;
455     //  This will clear the existing matrix (t << 390     //  This will clear the existing matrix (together with all data inside it)! 
456     matrix = HadrontherapyMatrix::GetInstance( << 391     matrix = HadrontherapyMatrix::GetInstance(numberOfVoxelsAlongX, 
457                                                << 392       numberOfVoxelsAlongY,
458                                                << 393       numberOfVoxelsAlongZ,
459                                                << 394       massOfVoxel);
460                                                << 395 
461                                                << 
462     // Initialize RBE                          << 
463     HadrontherapyRBE::CreateInstance(numberOfV << 
464                                                << 
465     // Comment out the line below if let calcu << 
466     // Initialize LET with energy of primaries << 
467     if ( (let = HadrontherapyLet::GetInstance( << 
468     {                                          << 
469         HadrontherapyLet::GetInstance() -> Ini << 
470     }                                          << 
471                                                << 
472                                                << 
473     // Initialize analysis                        396     // Initialize analysis
                                                   >> 397     HadrontherapyAnalysisManager* analysis = HadrontherapyAnalysisManager::GetInstance();
                                                   >> 398 #ifdef G4ANALYSIS_USE_ROOT
                                                   >> 399     analysis -> flush();     // Finalize the root file 
                                                   >> 400     analysis -> book();
                                                   >> 401 #endif
474     // Inform the kernel about the new geometr    402     // Inform the kernel about the new geometry
475     G4RunManager::GetRunManager() -> GeometryH    403     G4RunManager::GetRunManager() -> GeometryHasBeenModified();
476     G4RunManager::GetRunManager() -> PhysicsHa    404     G4RunManager::GetRunManager() -> PhysicsHasBeenModified();
477                                                << 
478     PrintParameters();                         << 
479                                                << 
480     // CheckOverlaps();                        << 
481 }                                              << 
482                                                   405 
483 ////////////////////////////////////////////// << 406     PrintParameters();
484 //Check of the geometry                        << 
485 ////////////////////////////////////////////// << 
486 void HadrontherapyDetectorConstruction::CheckO << 
487 {                                              << 
488     G4PhysicalVolumeStore* thePVStore = G4Phys << 
489     G4cout << thePVStore->size() << " physical << 
490     G4bool overlapFlag = false;                << 
491     G4int res=1000;                            << 
492     G4double tol=0.; //tolerance               << 
493     for (size_t i=0;i<thePVStore->size();i++)  << 
494     {                                          << 
495         //overlapFlag = (*thePVStore)[i]->Chec << 
496         overlapFlag = (*thePVStore)[i]->CheckO << 
497     if (overlapFlag)                           << 
498         G4cout << "Check: there are overlappin << 
499 }                                                 407 }
500                                                   408 
501 ////////////////////////////////////////////// << 
502 void HadrontherapyDetectorConstruction::PrintP    409 void HadrontherapyDetectorConstruction::PrintParameters()
503 {                                                 410 {
504                                                << 
505     G4cout << "The (X,Y,Z) dimensions of the p << 
506     G4BestUnit( phantom -> GetXHalfLength()*2. << 
507     G4BestUnit( phantom -> GetYHalfLength()*2. << 
508     G4BestUnit( phantom -> GetZHalfLength()*2. << 
509                                                << 
510     G4cout << "The (X,Y,Z) dimensions of the d << 
511     G4BestUnit( detector -> GetXHalfLength()*2 << 
512     G4BestUnit( detector -> GetYHalfLength()*2 << 
513     G4BestUnit( detector -> GetZHalfLength()*2 << 
514                                                << 
515     G4cout << "Displacement between Phantom an << 
516     G4cout << "DX= "<< G4BestUnit(phantomPosit << 
517     "DY= "<< G4BestUnit(phantomPosition.getY() << 
518     "DZ= "<< G4BestUnit(phantomPosition.getZ() << 
519                                                << 
520     G4cout << "The (X,Y,Z) sizes of the Voxels << 
521     G4BestUnit(sizeOfVoxelAlongX, "Length")  < << 
522     G4BestUnit(sizeOfVoxelAlongY, "Length")  < << 
523     G4BestUnit(sizeOfVoxelAlongZ, "Length") << << 
524                                                << 
525     G4cout << "The number of Voxels along (X,Y << 
526     numberOfVoxelsAlongX  << ',' <<            << 
527     numberOfVoxelsAlongY  <<','  <<            << 
528     numberOfVoxelsAlongZ  << ')' << G4endl;    << 
529 }                                              << 
530                                                   411 
                                                   >> 412     G4cout << "The (X,Y,Z) dimensions of the phantom are : (" << 
                                                   >> 413   G4BestUnit( phantom -> GetXHalfLength()*2., "Length") << ',' << 
                                                   >> 414   G4BestUnit( phantom -> GetYHalfLength()*2., "Length") << ',' << 
                                                   >> 415   G4BestUnit( phantom -> GetZHalfLength()*2., "Length") << ')' << G4endl; 
                                                   >> 416     
                                                   >> 417     G4cout << "The (X,Y,Z) dimensions of the detector are : (" << 
                                                   >> 418   G4BestUnit( detector -> GetXHalfLength()*2., "Length") << ',' << 
                                                   >> 419   G4BestUnit( detector -> GetYHalfLength()*2., "Length") << ',' << 
                                                   >> 420   G4BestUnit( detector -> GetZHalfLength()*2., "Length") << ')' << G4endl; 
                                                   >> 421 
                                                   >> 422     G4cout << "Displacement between Phantom and World is: "; 
                                                   >> 423     G4cout << "DX= "<< G4BestUnit(phantomPosition.getX(),"Length") << 
                                                   >> 424   "DY= "<< G4BestUnit(phantomPosition.getY(),"Length") << 
                                                   >> 425   "DZ= "<< G4BestUnit(phantomPosition.getZ(),"Length") << G4endl;
                                                   >> 426 
                                                   >> 427     G4cout << "The (X,Y,Z) sizes of the Voxels are: (" << 
                                                   >> 428   G4BestUnit(sizeOfVoxelAlongX, "Length")  << ',' << 
                                                   >> 429   G4BestUnit(sizeOfVoxelAlongY, "Length")  << ',' << 
                                                   >> 430   G4BestUnit(sizeOfVoxelAlongZ, "Length") << ')' << G4endl;
                                                   >> 431 
                                                   >> 432     G4cout << "The number of Voxels along (X,Y,Z) is: (" << 
                                                   >> 433   numberOfVoxelsAlongX  << ',' <<
                                                   >> 434   numberOfVoxelsAlongY  <<','  <<
                                                   >> 435   numberOfVoxelsAlongZ  << ')' << G4endl;
531                                                   436 
                                                   >> 437 }
532                                                   438