Geant4 Cross Reference

Cross-Referencing   Geant4
Geant4/processes/electromagnetic/dna/utils/src/G4DNADamage.cc

Version: [ ReleaseNotes ] [ 1.0 ] [ 1.1 ] [ 2.0 ] [ 3.0 ] [ 3.1 ] [ 3.2 ] [ 4.0 ] [ 4.0.p1 ] [ 4.0.p2 ] [ 4.1 ] [ 4.1.p1 ] [ 5.0 ] [ 5.0.p1 ] [ 5.1 ] [ 5.1.p1 ] [ 5.2 ] [ 5.2.p1 ] [ 5.2.p2 ] [ 6.0 ] [ 6.0.p1 ] [ 6.1 ] [ 6.2 ] [ 6.2.p1 ] [ 6.2.p2 ] [ 7.0 ] [ 7.0.p1 ] [ 7.1 ] [ 7.1.p1 ] [ 8.0 ] [ 8.0.p1 ] [ 8.1 ] [ 8.1.p1 ] [ 8.1.p2 ] [ 8.2 ] [ 8.2.p1 ] [ 8.3 ] [ 8.3.p1 ] [ 8.3.p2 ] [ 9.0 ] [ 9.0.p1 ] [ 9.0.p2 ] [ 9.1 ] [ 9.1.p1 ] [ 9.1.p2 ] [ 9.1.p3 ] [ 9.2 ] [ 9.2.p1 ] [ 9.2.p2 ] [ 9.2.p3 ] [ 9.2.p4 ] [ 9.3 ] [ 9.3.p1 ] [ 9.3.p2 ] [ 9.4 ] [ 9.4.p1 ] [ 9.4.p2 ] [ 9.4.p3 ] [ 9.4.p4 ] [ 9.5 ] [ 9.5.p1 ] [ 9.5.p2 ] [ 9.6 ] [ 9.6.p1 ] [ 9.6.p2 ] [ 9.6.p3 ] [ 9.6.p4 ] [ 10.0 ] [ 10.0.p1 ] [ 10.0.p2 ] [ 10.0.p3 ] [ 10.0.p4 ] [ 10.1 ] [ 10.1.p1 ] [ 10.1.p2 ] [ 10.1.p3 ] [ 10.2 ] [ 10.2.p1 ] [ 10.2.p2 ] [ 10.2.p3 ] [ 10.3 ] [ 10.3.p1 ] [ 10.3.p2 ] [ 10.3.p3 ] [ 10.4 ] [ 10.4.p1 ] [ 10.4.p2 ] [ 10.4.p3 ] [ 10.5 ] [ 10.5.p1 ] [ 10.6 ] [ 10.6.p1 ] [ 10.6.p2 ] [ 10.6.p3 ] [ 10.7 ] [ 10.7.p1 ] [ 10.7.p2 ] [ 10.7.p3 ] [ 10.7.p4 ] [ 11.0 ] [ 11.0.p1 ] [ 11.0.p2 ] [ 11.0.p3, ] [ 11.0.p4 ] [ 11.1 ] [ 11.1.1 ] [ 11.1.2 ] [ 11.1.3 ] [ 11.2 ] [ 11.2.1 ] [ 11.2.2 ] [ 11.3.0 ]

  1 //
  2 // ********************************************************************
  3 // * License and Disclaimer                                           *
  4 // *                                                                  *
  5 // * The  Geant4 software  is  copyright of the Copyright Holders  of *
  6 // * the Geant4 Collaboration.  It is provided  under  the terms  and *
  7 // * conditions of the Geant4 Software License,  included in the file *
  8 // * LICENSE and available at  http://cern.ch/geant4/license .  These *
  9 // * include a list of copyright holders.                             *
 10 // *                                                                  *
 11 // * Neither the authors of this software system, nor their employing *
 12 // * institutes,nor the agencies providing financial support for this *
 13 // * work  make  any representation or  warranty, express or implied, *
 14 // * regarding  this  software system or assume any liability for its *
 15 // * use.  Please see the license in the file  LICENSE  and URL above *
 16 // * for the full disclaimer and the limitation of liability.         *
 17 // *                                                                  *
 18 // * This  code  implementation is the result of  the  scientific and *
 19 // * technical work of the GEANT4 collaboration.                      *
 20 // * By using,  copying,  modifying or  distributing the software (or *
 21 // * any work based  on the software)  you  agree  to acknowledge its *
 22 // * use  in  resulting  scientific  publications,  and indicate your *
 23 // * acceptance of all terms of the Geant4 Software license.          *
 24 // ********************************************************************
 25 //
 26 //
 27 #include "G4DNADamage.hh"
 28 #include "G4UnitsTable.hh"
 29 
 30 G4ThreadLocal G4DNADamage* G4DNADamage::fpInstance(nullptr);
 31 
 32 G4DNAIndirectHit::G4DNAIndirectHit(const G4String& baseName,
 33                                    const G4Molecule* molecule,
 34                                    const G4ThreeVector& position,
 35                                    G4double time) :
 36      fpMolecule(molecule)
 37 {
 38   fBaseName = baseName;
 39   fPosition = position;
 40   fTime = time;
 41 }
 42 
 43 G4DNAIndirectHit::~G4DNAIndirectHit()
 44 {
 45   delete fpMolecule;
 46   fpMolecule = nullptr;
 47 }
 48 
 49 void G4DNAIndirectHit::Print()
 50 {
 51   G4cout << "Reaction : " << fpMolecule->GetName() << " + " << fBaseName
 52          << " at position : " << G4BestUnit(fPosition, "Length")
 53          << " and time : " << G4BestUnit(fTime, "Time") << G4endl;
 54 }
 55 
 56 G4DNADamage* G4DNADamage::Instance()
 57 {
 58   if (fpInstance == nullptr) new G4DNADamage();
 59 
 60   return fpInstance;
 61 }
 62 
 63 G4DNADamage::G4DNADamage()
 64 {
 65   fJustCountDamage = false;
 66   fNIndirectDamage = 0;
 67   fpInstance = this;
 68 }
 69 
 70 G4DNADamage::~G4DNADamage()
 71 {
 72   for (auto & fIndirectHit : fIndirectHits)
 73   {
 74     delete fIndirectHit;
 75   }
 76   fIndirectHits.clear();
 77 }
 78 
 79 void G4DNADamage::DeleteInstance()
 80 {
 81   delete fpInstance;
 82   fpInstance = nullptr;
 83 }
 84 
 85 void G4DNADamage::Reset()
 86 {
 87   fNIndirectDamage = 0;
 88   for (auto & fIndirectHit : fIndirectHits)
 89   {
 90     delete fIndirectHit;
 91   }
 92   fIndirectHits.clear();
 93 }
 94 
 95 void G4DNADamage::AddIndirectDamage(const G4String& baseName,
 96                                     const G4Molecule* molecule,
 97                                     const G4ThreeVector& position,
 98                                     G4double time)
 99 {
100   if (fJustCountDamage)
101   {
102     fNIndirectDamage++;
103     return;
104   }
105 
106   G4DNAIndirectHit* indirectHit = nullptr;
107   auto it = fMolMap.find(*molecule);
108 
109   if (it == fMolMap.cend())
110   {
111     G4Molecule* mol(nullptr);
112     fMolMap[*molecule] = (mol = new G4Molecule(*molecule));
113     indirectHit = new G4DNAIndirectHit(baseName, mol, position, time);
114   }
115   else
116   {
117     indirectHit = new G4DNAIndirectHit(baseName, it->second, position, time);
118   }
119   fIndirectHits.push_back(indirectHit);
120 }
121