| Geant4 Cross Reference |
1 //
2 // ********************************************************************
3 // * License and Disclaimer *
4 // * *
5 // * The Geant4 software is copyright of the Copyright Holders of *
6 // * the Geant4 Collaboration. It is provided under the terms and *
7 // * conditions of the Geant4 Software License, included in the file *
8 // * LICENSE and available at http://cern.ch/geant4/license . These *
9 // * include a list of copyright holders. *
10 // * *
11 // * Neither the authors of this software system, nor their employing *
12 // * institutes,nor the agencies providing financial support for this *
13 // * work make any representation or warranty, express or implied, *
14 // * regarding this software system or assume any liability for its *
15 // * use. Please see the license in the file LICENSE and URL above *
16 // * for the full disclaimer and the limitation of liability. *
17 // * *
18 // * This code implementation is the result of the scientific and *
19 // * technical work of the GEANT4 collaboration. *
20 // * By using, copying, modifying or distributing the software (or *
21 // * any work based on the software) you agree to acknowledge its *
22 // * use in resulting scientific publications, and indicate your *
23 // * acceptance of all terms of the Geant4 Software license. *
24 // ********************************************************************
25 //
26 //
27 // Author: Mathieu Karamitros
28
29 // The code is developed in the framework of the ESA AO7146
30 //
31 // We would be very happy hearing from you, send us your feedback! :)
32 //
33 // In order for Geant4-DNA to be maintained and still open-source,
34 // article citations are crucial.
35 // If you use Geant4-DNA chemistry and you publish papers about your software,
36 // in addition to the general paper on Geant4-DNA:
37 //
38 // Int. J. Model. Simul. Sci. Comput. 1 (2010) 157–178
39 //
40 // we would be very happy if you could please also cite the following
41 // reference papers on chemistry:
42 //
43 // J. Comput. Phys. 274 (2014) 841-882
44 // Prog. Nucl. Sci. Tec. 2 (2011) 503-508
45
46 #ifndef G4DNADAMAGE_HH
47 #define G4DNADAMAGE_HH 1
48
49 #include "G4Molecule.hh"
50
51 class G4VDNAHit
52 {
53 public :
54 G4VDNAHit()= default;
55 virtual ~G4VDNAHit()= default;
56 };
57
58 class G4DNAIndirectHit : public G4VDNAHit
59 {
60 public :
61 G4DNAIndirectHit(const G4String& baseName, const G4Molecule* molecule,
62 const G4ThreeVector& position, G4double time);
63 ~G4DNAIndirectHit() override;
64
65 inline const G4Molecule* GetMolecule() {return fpMolecule;}
66 inline const G4ThreeVector& GetPosition() {return fPosition;}
67 inline const G4String& GetBaseName() {return fBaseName;}
68 inline double GetTime() {return fTime;}
69
70 void Print();
71
72 protected :
73 const G4Molecule* fpMolecule;
74 G4ThreeVector fPosition;
75 G4double fTime;
76 G4String fBaseName;
77 };
78
79 class G4DNADamage
80 {
81 public:
82 static G4DNADamage* Instance();
83 static void DeleteInstance();
84
85 virtual void Reset();
86
87 //void AddDirectDamage();
88 virtual void AddIndirectDamage(const G4String& baseName,
89 const G4Molecule* molecule,
90 const G4ThreeVector& position,
91 G4double time);
92
93 inline const std::vector<G4DNAIndirectHit*>* GetIndirectHits();
94 inline virtual G4int GetNIndirectHits() const
95 {
96 if(fJustCountDamage)
97 return fNIndirectDamage;
98
99 return (G4int)fIndirectHits.size();
100 }
101
102 inline virtual void SetOnlyCountDamage(G4bool flag = true)
103 {
104 fJustCountDamage = flag;
105 }
106
107 inline virtual G4bool OnlyCountDamage() const
108 {
109 return fJustCountDamage;
110 }
111
112 protected :
113 G4DNADamage();
114 static G4ThreadLocal G4DNADamage* fpInstance;
115 virtual ~G4DNADamage();
116
117 G4bool fJustCountDamage;
118 G4int fNIndirectDamage;
119 std::vector<G4DNAIndirectHit*> fIndirectHits;
120 std::map<G4Molecule, const G4Molecule*> fMolMap;
121 };
122
123 inline const std::vector<G4DNAIndirectHit*>* G4DNADamage::GetIndirectHits()
124 {
125 return &fIndirectHits;
126 }
127
128 #endif // G4DNADAMAGES_HH
129