Geant4 Cross Reference

Cross-Referencing   Geant4
Geant4/examples/advanced/dna/moleculardna/src/DamageModelMessenger.cc

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  1 //
  2 // ********************************************************************
  3 // * License and Disclaimer                                           *
  4 // *                                                                  *
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  6 // * the Geant4 Collaboration.  It is provided  under  the terms  and *
  7 // * conditions of the Geant4 Software License,  included in the file *
  8 // * LICENSE and available at  http://cern.ch/geant4/license .  These *
  9 // * include a list of copyright holders.                             *
 10 // *                                                                  *
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 15 // * use.  Please see the license in the file  LICENSE  and URL above *
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 17 // *                                                                  *
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 24 // ********************************************************************
 25 //
 26 //
 27 #include "DamageModelMessenger.hh"
 28 
 29 #include "DamageModel.hh"
 30 
 31 #include "G4UIcmdWith3VectorAndUnit.hh"
 32 #include "G4UIcmdWithABool.hh"
 33 #include "G4UIcmdWithADouble.hh"
 34 #include "G4UIcmdWithADoubleAndUnit.hh"
 35 #include "G4UIcmdWithAString.hh"
 36 #include "G4UIcmdWithAnInteger.hh"
 37 #include "G4UIcmdWithoutParameter.hh"
 38 #include "G4UIdirectory.hh"
 39 
 40 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
 41 
 42 DamageModelMessenger::DamageModelMessenger(DamageModel* damageModel)
 43   : fpDamageModel(damageModel),
 44     fpDamageDirectory(nullptr),
 45     fpIntEnergyLower(nullptr),
 46     fpIntEnergyUpper(nullptr),
 47     fpOHBaseChance(nullptr),
 48     fpOHStrandChance(nullptr),
 49     fpOHInductionChance(nullptr),
 50     fpHBaseChance(nullptr),
 51     fpHStrandChance(nullptr),
 52     fpHInductionChance(nullptr),
 53     fpEaqBaseChance(nullptr),
 54     fpEaqStrandChance(nullptr),
 55     fpEaqInductionChance(nullptr)
 56 {
 57   fpDamageDirectory = new G4UIdirectory("/dnadamage/");
 58   fpDamageDirectory->SetGuidance("Damage Model Parameters");
 59 
 60   fpIntEnergyLower = new G4UIcmdWithADoubleAndUnit("/dnadamage/directDamageLower", this);
 61   fpIntEnergyLower->SetGuidance("Minimum Energy required for an SSB");
 62   fpIntEnergyLower->SetGuidance("Chance grows linearly until it reaches the upper value");
 63   fpIntEnergyLower->SetParameterName("Energy", false);
 64 
 65   fpIntEnergyUpper = new G4UIcmdWithADoubleAndUnit("/dnadamage/directDamageUpper", this);
 66   fpIntEnergyUpper->SetGuidance("Energy required for an SSB to definitely occur");
 67   fpIntEnergyUpper->SetParameterName("Energy", false);
 68 
 69   // OH
 70 
 71   fpOHBaseChance = new G4UIcmdWithADouble("/dnadamage/indirectOHBaseChance", this);
 72   fpOHBaseChance->SetGuidance("Chance [0,1] of a OH damaging a base");
 73   fpOHBaseChance->SetParameterName("Energy", false);
 74 
 75   fpOHStrandChance = new G4UIcmdWithADouble("/dnadamage/indirectOHStrandChance", this);
 76   fpOHStrandChance->SetGuidance("Chance [0,1] of a OH damaging sugar-phosphate");
 77   fpOHStrandChance->SetParameterName("Energy", false);
 78 
 79   fpOHInductionChance = new G4UIcmdWithADouble("/dnadamage/inductionOHChance", this);
 80   fpOHInductionChance->SetGuidance("Chance [0,1] of a Base + OH -> strand break");
 81   fpOHInductionChance->SetParameterName("Energy", false);
 82 
 83   // H
 84 
 85   fpHBaseChance = new G4UIcmdWithADouble("/dnadamage/indirectHBaseChance", this);
 86   fpHBaseChance->SetGuidance("Chance [0,1] of a H damaging a base");
 87   fpHBaseChance->SetParameterName("Energy", false);
 88 
 89   fpHStrandChance = new G4UIcmdWithADouble("/dnadamage/indirectHStrandChance", this);
 90   fpHStrandChance->SetGuidance("Chance [0,1] of a H damaging sugar-phosphate");
 91   fpHStrandChance->SetParameterName("Energy", false);
 92 
 93   fpHInductionChance = new G4UIcmdWithADouble("/dnadamage/inductionHChance", this);
 94   fpHInductionChance->SetGuidance("Chance [0,1] of a Base + H -> strand break");
 95   fpHInductionChance->SetParameterName("Energy", false);
 96 
 97   // E_aq
 98 
 99   fpEaqBaseChance = new G4UIcmdWithADouble("/dnadamage/indirectEaqBaseChance", this);
100   fpEaqBaseChance->SetGuidance("Chance [0,1] of a Eaq damaging a base");
101   fpEaqBaseChance->SetParameterName("Energy", false);
102 
103   fpEaqStrandChance = new G4UIcmdWithADouble("/dnadamage/indirectEaqStrandChance", this);
104   fpEaqStrandChance->SetGuidance("Chance [0,1] of a Eaq damaging sugar-phosphate");
105   fpEaqStrandChance->SetParameterName("Energy", false);
106 
107   fpEaqInductionChance = new G4UIcmdWithADouble("/dnadamage/inductionEaqChance", this);
108   fpEaqInductionChance->SetGuidance("Chance [0,1] of a Base + Eaq -> strand break");
109   fpEaqInductionChance->SetParameterName("Energy", false);
110 }
111 
112 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
113 
114 DamageModelMessenger::~DamageModelMessenger()
115 {
116   // interaction model
117   delete fpOHStrandChance;
118   delete fpOHInductionChance;
119   delete fpOHBaseChance;
120   delete fpHStrandChance;
121   delete fpHInductionChance;
122   delete fpHBaseChance;
123   delete fpEaqStrandChance;
124   delete fpEaqInductionChance;
125   delete fpEaqBaseChance;
126   delete fpIntEnergyLower;
127   delete fpIntEnergyUpper;
128   delete fpIntRangeDirect;
129   delete fpDamageDirectory;
130 }
131 
132 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
133 
134 void DamageModelMessenger::SetNewValue(G4UIcommand* command, G4String newValue)
135 {
136   if (command == fpIntEnergyUpper) {
137     fpDamageModel->SetDirectDamageUpper(G4UIcmdWithADoubleAndUnit::GetNewDoubleValue(newValue));
138   }
139   else if (command == fpIntEnergyLower) {
140     fpDamageModel->SetDirectDamageLower(G4UIcmdWithADoubleAndUnit::GetNewDoubleValue(newValue));
141   }
142   else if (command == fpOHBaseChance) {
143     fpDamageModel->SetIndirectOHBaseChance(G4UIcmdWithADouble::GetNewDoubleValue(newValue));
144   }
145   else if (command == fpOHStrandChance) {
146     fpDamageModel->SetIndirectOHStrandChance(G4UIcmdWithADouble::GetNewDoubleValue(newValue));
147   }
148   else if (command == fpOHInductionChance) {
149     fpDamageModel->SetInductionOHChance(G4UIcmdWithADouble::GetNewDoubleValue(newValue));
150   }
151   else if (command == fpHBaseChance) {
152     fpDamageModel->SetIndirectHBaseChance(G4UIcmdWithADouble::GetNewDoubleValue(newValue));
153   }
154   else if (command == fpHStrandChance) {
155     fpDamageModel->SetIndirectHStrandChance(G4UIcmdWithADouble::GetNewDoubleValue(newValue));
156   }
157   else if (command == fpHInductionChance) {
158     fpDamageModel->SetInductionHChance(G4UIcmdWithADouble::GetNewDoubleValue(newValue));
159   }
160   else if (command == fpEaqBaseChance) {
161     fpDamageModel->SetIndirectEaqBaseChance(G4UIcmdWithADouble::GetNewDoubleValue(newValue));
162   }
163   else if (command == fpEaqStrandChance) {
164     fpDamageModel->SetIndirectEaqStrandChance(G4UIcmdWithADouble::GetNewDoubleValue(newValue));
165   }
166   else if (command == fpEaqInductionChance) {
167     fpDamageModel->SetInductionEaqChance(G4UIcmdWithADouble::GetNewDoubleValue(newValue));
168   }
169 }
170 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
171