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25 //
26 //
27 /// \file DNAGeometryMessenger.hh
28
29 #ifndef MOLECULAR_DNA_MESSENGER_HH
30 #define MOLECULAR_DNA_MESSENGER_HH
31
32 #include "G4UIcmdWith3VectorAndUnit.hh"
33 #include "G4UIcmdWithABool.hh"
34 #include "G4UIcmdWithADouble.hh"
35 #include "G4UIcmdWithADoubleAndUnit.hh"
36 #include "G4UIcmdWithAString.hh"
37 #include "G4UIcmdWithAnInteger.hh"
38 #include "G4UIcmdWithoutParameter.hh"
39 #include "G4UIdirectory.hh"
40 #include "G4UImessenger.hh"
41 #include "globals.hh"
42
43 #include <memory>
44
45 class DNAGeometry;
46
47 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
48
49 class DNAGeometryMessenger : public G4UImessenger
50 {
51 public:
52 explicit DNAGeometryMessenger(DNAGeometry*);
53
54 ~DNAGeometryMessenger() override = default;
55
56 void SetNewValue(G4UIcommand*, G4String) override;
57
58 protected:
59 private:
60 DNAGeometry* fpDNAGeometry;
61
62 // Related to "voxel" placements
63 std::unique_ptr<G4UIdirectory> fpDNADirectory;
64 std::unique_ptr<G4UIcmdWithAString> fpNewPlacementVolumeFile; // specifies molecule locations
65 std::unique_ptr<G4UIcmdWithAString> fpVoxelPlacementsFile; // specifies voxel locations
66 std::unique_ptr<G4UIcmdWith3VectorAndUnit> fpVoxelSideLength; // voxel size
67 std::unique_ptr<G4UIcmdWith3VectorAndUnit>
68 fpFractalScaling; // multiplier for de-dimensionalised voxel locations
69 std::unique_ptr<G4UIcmdWithABool>
70 fpAnglesAsPi; // take voxel placement angles as multiples of pi
71 std::unique_ptr<G4UIcmdWithABool>
72 fpCustomMoleculeSizes; // turn off default molecule sizes and use custom
73 std::unique_ptr<G4UIcmdWithAString> fpAddMoleculeSize; // set a molecule size
74
75 // Related to processing
76 std::unique_ptr<G4UIcmdWithABool> fpCheckDNAOverlaps;
77 std::unique_ptr<G4UIcmdWithAnInteger> fpVerbosity;
78 std::unique_ptr<G4UIcmdWithAnInteger> fpSmartless;
79
80 // damage-like
81 std::unique_ptr<G4UIcmdWithADoubleAndUnit> fpIntRangeDirect;
82 std::unique_ptr<G4UIcmdWithADoubleAndUnit> fpRadicalKillDistance;
83 std::unique_ptr<G4UIcmdWithABool> fpUseHistoneScav;
84
85 // vis
86 std::unique_ptr<G4UIcmdWithABool> fpDrawCellVolumes;
87 // testing
88 std::unique_ptr<G4UIdirectory> fpTestDirectory;
89 std::unique_ptr<G4UIcmdWithoutParameter> fpChromosomeTest;
90 std::unique_ptr<G4UIcmdWithoutParameter> fpBasePairTest;
91 std::unique_ptr<G4UIcmdWithoutParameter> fpUniqueIDTest;
92 };
93
94 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
95
96 #endif // MOLECULAR_DNA_MESSENGER_HH
97