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25 //
26 //
27 /// \file ChemGeoImporthh
28 /// \brief Definition of the ChemGeoImport class
29
30 #ifndef ChemGeoImport_HH
31 #define ChemGeoImport_HH
32
33 #include <map>
34 #include <fstream>
35 #include <algorithm>
36 #include <set>
37
38 #include "G4String.hh"
39 #include "G4ThreeVector.hh"
40 #include "G4Orb.hh"
41 #include "G4VSolid.hh"
42 #include "G4Box.hh"
43 #include "G4SystemOfUnits.hh"
44 #include "G4SubtractionSolid.hh"
45 #include "G4LogicalVolume.hh"
46 #include "G4PVPlacement.hh"
47 #include "G4NistManager.hh"
48 #include "G4VisAttributes.hh"
49 #include "G4H2O.hh"
50 #include "G4Electron_aq.hh"
51 #include "G4Scheduler.hh"
52
53 #include "UserMoleculeGun.hh"
54
55 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
56
57 struct ChemMolecule
58 {
59 ChemMolecule(G4String name, G4int copyNumber, G4ThreeVector position,
60 G4int strand, G4int state, G4int electronicLevel, G4int trackId)
61 {
62 fName = name;
63 fCopyNumber = copyNumber;
64 fPosition = position;
65 fStrand = strand;
66 fState = state;
67 fElectronicLevel = electronicLevel;
68 fTrackId = trackId;
69 }
70
71 ~ChemMolecule() {}
72
73 G4String fName{""};
74
75 G4int fCopyNumber{-1};
76 G4int fStrand{-1};
77 G4int fState{-99};
78 G4int fElectronicLevel{-99};
79 G4int fTrackId{-1};
80
81 G4ThreeVector fPosition{0};
82
83 friend G4bool operator==(const ChemMolecule& lhs, const ChemMolecule& rhs)
84 {
85 return (lhs.fName == rhs.fName
86 && lhs.fCopyNumber == rhs.fCopyNumber
87 && lhs.fStrand == rhs.fStrand
88 && lhs.fState == rhs.fState
89 && lhs.fElectronicLevel == rhs.fElectronicLevel
90 && lhs.fTrackId == rhs.fTrackId);
91 }
92 };
93
94 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
95
96 class ChemGeoImport
97 {
98 public:
99 ChemGeoImport();
100 ~ChemGeoImport();
101
102 void SetFactor(double factor){fFactor=factor;}
103 G4double GetFactor() const {return fFactor;}
104
105 G4double GetSize() const {return fSize;}
106
107 void ParseFiles(const G4String& chemInputFile);
108
109 // This method will trigger the build of the geometry
110 void InsertMoleculeInWorld();
111
112 void Reset();
113 G4String GetVoxelDefFilePath(G4String bareName);
114 G4bool IsFileParsed() {return fIsParsed;}
115 private:
116 G4bool fIsParsed{false};
117
118 // Factor to scale the geometry
119 G4double fFactor{1};
120
121 G4double fSize{0};
122
123 G4String fGeoNameFromChemInput{""};
124
125 // Vector to contain all the molecule structures listed within the imput file
126 std::vector<ChemMolecule> fMolecules;
127
128 std::vector<ChemMolecule> fToBeRemovedMol;
129
130 UserMoleculeGun* fpGun{nullptr};
131
132 void ParseChemInputFile(const G4String& fileName);
133 void ParseGeoFile(const G4String& fileName);
134 G4bool IsMoleculeInTheRemoveTable(const ChemMolecule& molecule);
135
136 void GetVoxelDefFilePathList();
137 std::set<G4String> fVoxelDefFilesList;
138 };
139
140 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
141
142 #endif // ChemGeoImport_HH
143