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26 //
27 //
28 /// \file AnalysisHandler.hh
29 /// \brief Definition of the AnalysisHandler class
30
31 #ifndef AnalysisHandler_h
32 #define AnalysisHandler_h 1
33
34 #include <memory>
35 #include "ScanDamage.hh"
36 #include "TLKModel.hh"
37 #include "LEMIVModel.hh"
38 #include "BelovModel.hh"
39
40 class AnalysisHandler
41 {
42 public:
43 AnalysisHandler(/* args */);
44 ~AnalysisHandler() = default;
45 void SetThresholdEnergy(double e);
46 void GetAllDamageAndScanSB();
47 void GiveMeSBs();
48 void ApplyDNAModel(const std::string dnamodel);
49 void SetBpForDSB(unsigned int pVal);
50 void SetParametersForTLKModel(double pLambda1 = 3.0,double pLambda2=0.03,
51 double pBeta1=0.01, double pBeta2=0.06,double pEta=0.002);
52 void SetParametersForLEMIVModel(double pLoopLength=2e6,double pFunrej=0,
53 double pTfast=0.24,double pTslow=2.81);
54 void CreateSDD(std::string filename);
55 private:
56 ///void GetDoseFromEdep();
57 std::unique_ptr<ScanDamage> fScanDamage;
58 std::unique_ptr<TLKModel> fTLKModel;
59 std::unique_ptr<LEMIVModel> fLEMIVModel;
60 std::unique_ptr<BelovModel> fBelovModel;
61 std::vector<Damage> fAllDamage;
62
63 std::pair<float,float> fNsDSBandError = {0,0};
64 std::pair<float,float> fNcDSBandError = {0,0};
65 std::pair<float,float> fNDSBandError = {0,0};
66 std::pair<float,float> fNDSBdirandError = {0,0}; // DSB has contribution from at least one direct damage
67 std::pair<float,float> fNDSBIndandError = {0,0}; // DSB has contribution from at least one indirect damage
68 std::pair<float,float> fNDSBdirIandError = {0,0}; // DSB has contribution from both direct and indirect damage
69 std::pair<float,float> fNSSBandError = {0,0};
70 std::pair<float,float> fNSBandError = {0,0};
71 std::pair<float,float> fNdirSBandError = {0,0};
72 std::pair<float,float> fNindirSBandError = {0,0};
73
74 bool fIsSBScanned = false;
75 // num of bp to consider a DSB for the MakeCluster function
76 // default value is 10
77 unsigned int fBpForDSB{10};
78 // store dose deposited in nucleus cell
79 double fDose{0};
80 //TLK: Compute a SF Curve
81 double pTLKDoseMax{0}, pTLKDeltaDose{0};
82 //LEMIV: compute fraction of unrejoined DSB up to pLEMIVTimeMax (h) and pLEMIVDeltaTime steps
83 double pLEMIVtimeMax{0}, pLEMIVdeltaTime{0};
84
85 double fNBp{0};// number of base pairs
86 double fEdepInNucleus{0}; // eV
87 double fNucleusVolume{0};
88
89 std::map<int,unsigned long long int> fChromosomeBpMap; //Store number of Bp in each Chomosomes;
90 };
91
92 #endif
93