Geant4 Cross Reference

Cross-Referencing   Geant4
Geant4/examples/advanced/dna/dsbandrepair/analysis/repairmodels/include/BelovModel.hh

Version: [ ReleaseNotes ] [ 1.0 ] [ 1.1 ] [ 2.0 ] [ 3.0 ] [ 3.1 ] [ 3.2 ] [ 4.0 ] [ 4.0.p1 ] [ 4.0.p2 ] [ 4.1 ] [ 4.1.p1 ] [ 5.0 ] [ 5.0.p1 ] [ 5.1 ] [ 5.1.p1 ] [ 5.2 ] [ 5.2.p1 ] [ 5.2.p2 ] [ 6.0 ] [ 6.0.p1 ] [ 6.1 ] [ 6.2 ] [ 6.2.p1 ] [ 6.2.p2 ] [ 7.0 ] [ 7.0.p1 ] [ 7.1 ] [ 7.1.p1 ] [ 8.0 ] [ 8.0.p1 ] [ 8.1 ] [ 8.1.p1 ] [ 8.1.p2 ] [ 8.2 ] [ 8.2.p1 ] [ 8.3 ] [ 8.3.p1 ] [ 8.3.p2 ] [ 9.0 ] [ 9.0.p1 ] [ 9.0.p2 ] [ 9.1 ] [ 9.1.p1 ] [ 9.1.p2 ] [ 9.1.p3 ] [ 9.2 ] [ 9.2.p1 ] [ 9.2.p2 ] [ 9.2.p3 ] [ 9.2.p4 ] [ 9.3 ] [ 9.3.p1 ] [ 9.3.p2 ] [ 9.4 ] [ 9.4.p1 ] [ 9.4.p2 ] [ 9.4.p3 ] [ 9.4.p4 ] [ 9.5 ] [ 9.5.p1 ] [ 9.5.p2 ] [ 9.6 ] [ 9.6.p1 ] [ 9.6.p2 ] [ 9.6.p3 ] [ 9.6.p4 ] [ 10.0 ] [ 10.0.p1 ] [ 10.0.p2 ] [ 10.0.p3 ] [ 10.0.p4 ] [ 10.1 ] [ 10.1.p1 ] [ 10.1.p2 ] [ 10.1.p3 ] [ 10.2 ] [ 10.2.p1 ] [ 10.2.p2 ] [ 10.2.p3 ] [ 10.3 ] [ 10.3.p1 ] [ 10.3.p2 ] [ 10.3.p3 ] [ 10.4 ] [ 10.4.p1 ] [ 10.4.p2 ] [ 10.4.p3 ] [ 10.5 ] [ 10.5.p1 ] [ 10.6 ] [ 10.6.p1 ] [ 10.6.p2 ] [ 10.6.p3 ] [ 10.7 ] [ 10.7.p1 ] [ 10.7.p2 ] [ 10.7.p3 ] [ 10.7.p4 ] [ 11.0 ] [ 11.0.p1 ] [ 11.0.p2 ] [ 11.0.p3, ] [ 11.0.p4 ] [ 11.1 ] [ 11.1.1 ] [ 11.1.2 ] [ 11.1.3 ] [ 11.2 ] [ 11.2.1 ] [ 11.2.2 ] [ 11.3.0 ] 

  1 //
  2 // ********************************************************************
  3 // * License and Disclaimer                                           *
  4 // *                                                                  *
  5 // * The  Geant4 software  is  copyright of the Copyright Holders  of *
  6 // * the Geant4 Collaboration.  It is provided  under  the terms  and *
  7 // * conditions of the Geant4 Software License,  included in the file *
  8 // * LICENSE and available at  http://cern.ch/geant4/license .  These *
  9 // * include a list of copyright holders.                             *
 10 // *                                                                  *
 11 // * Neither the authors of this software system, nor their employing *
 12 // * institutes,nor the agencies providing financial support for this *
 13 // * work  make  any representation or  warranty, express or implied, *
 14 // * regarding  this  software system or assume any liability for its *
 15 // * use.  Please see the license in the file  LICENSE  and URL above *
 16 // * for the full disclaimer and the limitation of liability.         *
 17 // *                                                                  *
 18 // * This  code  implementation is the result of  the  scientific and *
 19 // * technical work of the GEANT4 collaboration.                      *
 20 // * By using,  copying,  modifying or  distributing the software (or *
 21 // * any work based  on the software)  you  agree  to acknowledge its *
 22 // * use  in  resulting  scientific  publications,  and indicate your *
 23 // * acceptance of all terms of the Geant4 Software license.          *
 24 // ********************************************************************
 25 //
 26 // Authors: O. Belov and M. Batmunkh
 27 // January 2017
 28 // last edit: L.T. Anh (2023)
 29 /// \file BelovModel.hh
 30 /// \brief Definition of the BelovModel class
 31 
 32 
 33 #ifndef BelovModel_H
 34 #define BelovModel_H 1
 35 
 36 #include <iostream>
 37 #include <fstream>
 38 #include <vector>
 39 #include <map>
 40 
 41 class Damage;
 42 
 43 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
 44 
 45 class BelovModel 
 46 { 
 47 public:  
 48   BelovModel();
 49   void Initialize();
 50   bool CalculateRepair(double Dz);
 51 
 52   void SetAlpha(double value){falpha=value;};
 53   void SetNirrep(double value){fNirrep=value;};
 54   
 55   virtual     
 56   ~BelovModel() = default;  
 57 
 58  //Computes and sets input damage parameters
 59   void ComputeAndSetDamageInput(std::vector<Damage>);
 60 
 61   std::vector<std::pair<double,double>> GetDNARepair(std::string NameFoci);
 62 
 63   void WriteOutput(std::string pFileName);
 64   
 65   unsigned int GetBpForDSB(){return fBpForDSB;};
 66   void SetBpForDSB(unsigned int pVal){fBpForDSB = pVal;};
 67   void SetDose(double d) {fDose = d;}
 68   void SetDSBandComDSBandDose(double dsby,double cdsby,double d);
 69 private:
 70   double fDz;
 71   double falpha;
 72   double fNirrep; 
 73   double fTime;
 74   double ComplexDSBYield;
 75   double DSBYield;
 76   std::vector<double> Belov_odes_system(double t,std::vector<double> y);
 77   std::vector<std::pair<double,double>> frepairsim[5];
 78   std::map<std::string,std::vector<std::pair<double,double>>> fdnarepair;
 79   // num of bp to consider a DSB for the MakeCluster function
 80   // default value is 10
 81   unsigned int fBpForDSB;
 82   // store dose deposited in nucleus cell
 83   double fDose;
 84 };
 85 #endif
 86