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25 //
26 // Code developed by:
27 // S.Guatelli, M. Large and A. Malaroda, University of Wollongong
28 //
29 #include "ICRP110PhantomConstruction.hh"
30 #include "ICRP110PhantomNestedParameterisation.hh"
31 #include "ICRP110PhantomMaterial_Female.hh"
32 #include "ICRP110PhantomMaterial_Male.hh"
33 #include "globals.hh"
34 #include "G4SystemOfUnits.hh"
35 #include "G4Box.hh"
36 #include "G4Colour.hh"
37 #include "G4LogicalVolume.hh"
38 #include "G4PVPlacement.hh"
39 #include "G4PVParameterised.hh"
40 #include "G4VPhysicalVolume.hh"
41 #include "G4PVPlacement.hh"
42 #include "G4PVParameterised.hh"
43 #include "G4RunManager.hh"
44 #include "G4VisAttributes.hh"
45 #include <map>
46 #include <cstdlib>
47
48 ICRP110PhantomConstruction::ICRP110PhantomConstruction():
49 fMotherVolume(nullptr), fPhantomContainer(nullptr),
50 fNVoxelX(0), fNVoxelY(0), fNVoxelZ(0),
51 fVoxelHalfDimX(0), fVoxelHalfDimY(0), fVoxelHalfDimZ(0),
52 fMinX(0),fMaxX(0), fMinY(0), fMaxY(0),
53 fMinZ(0), fMaxZ(0), fNoFiles(0), fNVoxels(0),
54 fMateIDs(nullptr)
55 {
56 fMessenger = new ICRP110PhantomMessenger(this);
57 // the messenger allows to set the sex of the phantom
58 // interactively
59 fMaterial_Female = new ICRP110PhantomMaterial_Female();
60 fMaterial_Male = new ICRP110PhantomMaterial_Male();
61 fSex = "female"; // Female phantom is the default option
62 fSection = "head"; // Head partial phantom is the default option
63 }
64
65 ICRP110PhantomConstruction::~ICRP110PhantomConstruction()
66 {
67 delete fMaterial_Female;
68 delete fMaterial_Male;
69 delete fMessenger;
70 }
71
72 G4VPhysicalVolume* ICRP110PhantomConstruction::Construct()
73 {
74 // Define Material Air
75 G4double A; // atomic mass
76 G4double Z; // atomic number
77 G4double d; // density
78
79 A = 14.01*g/mole;
80 auto elN = new G4Element("Nitrogen","N",Z = 7.,A);
81 A = 16.00*g/mole;
82 auto elO = new G4Element("Oxygen","O",Z = 8.,A);
83
84 d = 0.001 *g/cm3;
85 auto matAir = new G4Material("Air",d,2);
86 matAir -> AddElement(elN,0.8);
87 matAir -> AddElement(elO,0.2);
88
89 std::vector<G4Material*> pMaterials;
90
91 if(fSex == "female"){
92
93 fMaterial_Female -> DefineMaterials();
94 //----- Store materials in a vector
95 pMaterials.push_back(matAir);
96 pMaterials.push_back(fMaterial_Female -> GetMaterial("teeth"));
97 pMaterials.push_back(fMaterial_Female -> GetMaterial("bone"));
98 pMaterials.push_back(fMaterial_Female -> GetMaterial("humeri_upper"));
99 pMaterials.push_back(fMaterial_Female -> GetMaterial("humeri_lower"));
100 pMaterials.push_back(fMaterial_Female -> GetMaterial("arm_lower"));
101 pMaterials.push_back(fMaterial_Female -> GetMaterial("hand"));
102 pMaterials.push_back(fMaterial_Female -> GetMaterial("clavicle"));
103 pMaterials.push_back(fMaterial_Female -> GetMaterial("cranium"));
104 pMaterials.push_back(fMaterial_Female -> GetMaterial("femora_upper"));
105 pMaterials.push_back(fMaterial_Female -> GetMaterial("femora_lower"));
106 pMaterials.push_back(fMaterial_Female -> GetMaterial("leg_lower"));
107 pMaterials.push_back(fMaterial_Female -> GetMaterial("foot"));
108 pMaterials.push_back(fMaterial_Female -> GetMaterial("mandible"));
109 pMaterials.push_back(fMaterial_Female -> GetMaterial("pelvis"));
110 pMaterials.push_back(fMaterial_Female -> GetMaterial("ribs"));
111 pMaterials.push_back(fMaterial_Female -> GetMaterial("scapulae"));
112 pMaterials.push_back(fMaterial_Female -> GetMaterial("spine_cervical"));
113 pMaterials.push_back(fMaterial_Female -> GetMaterial("spine_thoratic"));
114 pMaterials.push_back(fMaterial_Female -> GetMaterial("spine_lumbar"));
115 pMaterials.push_back(fMaterial_Female -> GetMaterial("sacrum"));
116 pMaterials.push_back(fMaterial_Female -> GetMaterial("sternum"));
117 pMaterials.push_back(fMaterial_Female -> GetMaterial("hf_upper"));
118 pMaterials.push_back(fMaterial_Female -> GetMaterial("hf_lower"));
119 pMaterials.push_back(fMaterial_Female -> GetMaterial("med_lowerarm"));
120 pMaterials.push_back(fMaterial_Female -> GetMaterial("med_lowerleg"));
121 pMaterials.push_back(fMaterial_Female -> GetMaterial("cartilage"));
122 pMaterials.push_back(fMaterial_Female -> GetMaterial("skin"));
123 pMaterials.push_back(fMaterial_Female -> GetMaterial("blood"));
124 pMaterials.push_back(fMaterial_Female -> GetMaterial("muscle"));
125 pMaterials.push_back(fMaterial_Female -> GetMaterial("liver"));
126 pMaterials.push_back(fMaterial_Female -> GetMaterial("pancreas"));
127 pMaterials.push_back(fMaterial_Female -> GetMaterial("brain"));
128 pMaterials.push_back(fMaterial_Female -> GetMaterial("heart"));
129 pMaterials.push_back(fMaterial_Female -> GetMaterial("eye"));
130 pMaterials.push_back(fMaterial_Female -> GetMaterial("kidney"));
131 pMaterials.push_back(fMaterial_Female -> GetMaterial("stomach"));
132 pMaterials.push_back(fMaterial_Female -> GetMaterial("intestine_sml"));
133 pMaterials.push_back(fMaterial_Female -> GetMaterial("intestine_lrg"));
134 pMaterials.push_back(fMaterial_Female -> GetMaterial("spleen"));
135 pMaterials.push_back(fMaterial_Female -> GetMaterial("thyroid"));
136 pMaterials.push_back(fMaterial_Female -> GetMaterial("bladder"));
137 pMaterials.push_back(fMaterial_Female -> GetMaterial("ovaries_testes"));
138 pMaterials.push_back(fMaterial_Female -> GetMaterial("adrenals"));
139 pMaterials.push_back(fMaterial_Female -> GetMaterial("oesophagus"));
140 pMaterials.push_back(fMaterial_Female -> GetMaterial("misc"));
141 pMaterials.push_back(fMaterial_Female -> GetMaterial("uterus_prostate"));
142 pMaterials.push_back(fMaterial_Female -> GetMaterial("lymph"));
143 pMaterials.push_back(fMaterial_Female -> GetMaterial("breast_glandular"));
144 pMaterials.push_back(fMaterial_Female -> GetMaterial("breast_adipose"));
145 pMaterials.push_back(fMaterial_Female -> GetMaterial("lung"));
146 pMaterials.push_back(fMaterial_Female -> GetMaterial("gastro_content"));
147 pMaterials.push_back(fMaterial_Female -> GetMaterial("urine"));
148 }
149 else if (fSex == "male"){
150 // MATT do the same here
151 fMaterial_Male -> DefineMaterials();
152
153 //----- Store materials in a vector
154 pMaterials.push_back(matAir);
155 pMaterials.push_back(fMaterial_Male -> GetMaterial("teeth"));
156 pMaterials.push_back(fMaterial_Male -> GetMaterial("bone"));
157 pMaterials.push_back(fMaterial_Male -> GetMaterial("humeri_upper"));
158 pMaterials.push_back(fMaterial_Male -> GetMaterial("humeri_lower"));
159 pMaterials.push_back(fMaterial_Male -> GetMaterial("arm_lower"));
160 pMaterials.push_back(fMaterial_Male -> GetMaterial("hand"));
161 pMaterials.push_back(fMaterial_Male -> GetMaterial("clavicle"));
162 pMaterials.push_back(fMaterial_Male -> GetMaterial("cranium"));
163 pMaterials.push_back(fMaterial_Male -> GetMaterial("femora_upper"));
164 pMaterials.push_back(fMaterial_Male -> GetMaterial("femora_lower"));
165 pMaterials.push_back(fMaterial_Male -> GetMaterial("leg_lower"));
166 pMaterials.push_back(fMaterial_Male -> GetMaterial("foot"));
167 pMaterials.push_back(fMaterial_Male -> GetMaterial("mandible"));
168 pMaterials.push_back(fMaterial_Male -> GetMaterial("pelvis"));
169 pMaterials.push_back(fMaterial_Male -> GetMaterial("ribs"));
170 pMaterials.push_back(fMaterial_Male -> GetMaterial("scapulae"));
171 pMaterials.push_back(fMaterial_Male -> GetMaterial("spine_cervical"));
172 pMaterials.push_back(fMaterial_Male -> GetMaterial("spine_thoratic"));
173 pMaterials.push_back(fMaterial_Male -> GetMaterial("spine_lumbar"));
174 pMaterials.push_back(fMaterial_Male -> GetMaterial("sacrum"));
175 pMaterials.push_back(fMaterial_Male -> GetMaterial("sternum"));
176 pMaterials.push_back(fMaterial_Male -> GetMaterial("hf_upper"));
177 pMaterials.push_back(fMaterial_Male -> GetMaterial("hf_lower"));
178 pMaterials.push_back(fMaterial_Male -> GetMaterial("med_lowerarm"));
179 pMaterials.push_back(fMaterial_Male -> GetMaterial("med_lowerleg"));
180 pMaterials.push_back(fMaterial_Male -> GetMaterial("cartilage"));
181 pMaterials.push_back(fMaterial_Male -> GetMaterial("skin"));
182 pMaterials.push_back(fMaterial_Male -> GetMaterial("blood"));
183 pMaterials.push_back(fMaterial_Male -> GetMaterial("muscle"));
184 pMaterials.push_back(fMaterial_Male -> GetMaterial("liver"));
185 pMaterials.push_back(fMaterial_Male -> GetMaterial("pancreas"));
186 pMaterials.push_back(fMaterial_Male -> GetMaterial("brain"));
187 pMaterials.push_back(fMaterial_Male -> GetMaterial("heart"));
188 pMaterials.push_back(fMaterial_Male -> GetMaterial("eye"));
189 pMaterials.push_back(fMaterial_Male -> GetMaterial("kidney"));
190 pMaterials.push_back(fMaterial_Male -> GetMaterial("stomach"));
191 pMaterials.push_back(fMaterial_Male -> GetMaterial("intestine_sml"));
192 pMaterials.push_back(fMaterial_Male -> GetMaterial("intestine_lrg"));
193 pMaterials.push_back(fMaterial_Male -> GetMaterial("spleen"));
194 pMaterials.push_back(fMaterial_Male -> GetMaterial("thyroid"));
195 pMaterials.push_back(fMaterial_Male -> GetMaterial("bladder"));
196 pMaterials.push_back(fMaterial_Male -> GetMaterial("ovaries_testes"));
197 pMaterials.push_back(fMaterial_Male -> GetMaterial("adrenals"));
198 pMaterials.push_back(fMaterial_Male -> GetMaterial("oesophagus"));
199 pMaterials.push_back(fMaterial_Male -> GetMaterial("misc"));
200 pMaterials.push_back(fMaterial_Male -> GetMaterial("uterus_prostate"));
201 pMaterials.push_back(fMaterial_Male -> GetMaterial("lymph"));
202 pMaterials.push_back(fMaterial_Male -> GetMaterial("breast_glandular"));
203 pMaterials.push_back(fMaterial_Male -> GetMaterial("breast_adipose"));
204 pMaterials.push_back(fMaterial_Male -> GetMaterial("lung"));
205 pMaterials.push_back(fMaterial_Male -> GetMaterial("gastro_content"));
206 pMaterials.push_back(fMaterial_Male -> GetMaterial("urine"));
207
208 }
209
210 // World Volume
211 G4double worldSize = 2.*m ;
212 G4Box* world = new G4Box("world", worldSize, worldSize, worldSize);
213
214 auto logicWorld = new G4LogicalVolume(world,
215 matAir,
216 "logicalWorld", nullptr, nullptr,nullptr);
217
218 fMotherVolume = new G4PVPlacement(nullptr,G4ThreeVector(),
219 "physicalWorld",
220 logicWorld,
221 nullptr,
222 false,
223 0);
224
225 logicWorld -> SetVisAttributes(G4VisAttributes::GetInvisible());
226
227 G4cout << "World has been built" << G4endl;
228
229 G4cout << "Phantom Sex: " << fSex << G4endl;
230 G4cout << "Phantom Section: " << fSection << G4endl;
231 ReadPhantomData(fSex, fSection);
232
233 G4cout << "Number of X,Y,Z voxels = " << fNVoxelX << ", " << fNVoxelY << ", " << fNVoxelZ << G4endl;
234
235 //----- Define the volume that contains all the voxels
236 G4Box* fContainer_solid = new G4Box("phantomContainer",fNVoxelX*fVoxelHalfDimX*mm,
237 fNVoxelY*fVoxelHalfDimY*mm,
238 fNVoxelZ*fVoxelHalfDimZ*mm);
239
240 auto fContainer_logic = new G4LogicalVolume( fContainer_solid,
241 matAir,
242 "phantomContainer",
243 nullptr, nullptr, nullptr);
244
245 fMaxX = fNVoxelX*fVoxelHalfDimX*mm; // Max X along X axis of the voxelised geometry
246 fMaxY = fNVoxelY*fVoxelHalfDimY*mm; // Max Y
247 fMaxZ = fNVoxelZ*fVoxelHalfDimZ*mm; // Max Z
248
249 fMinX = -fNVoxelX*fVoxelHalfDimX*mm;// Min X
250 fMinY = -fNVoxelY*fVoxelHalfDimY*mm;// Min Y
251 fMinZ = -fNVoxelZ*fVoxelHalfDimZ*mm;// Min Z
252
253 G4ThreeVector posCentreVoxels((fMinX+fMaxX)/2.,(fMinY+fMaxY)/2.,(fMinZ+fMaxZ)/2.);
254
255 G4cout << " placing voxel container volume at " << posCentreVoxels << G4endl;
256
257
258 fPhantomContainer
259 = new G4PVPlacement(nullptr, // rotation
260 posCentreVoxels,
261 fContainer_logic, // The logic volume
262 "phantomContainer", // Name
263 logicWorld, // Mother
264 false, // No op. bool.
265 1); // Copy number
266
267 fContainer_logic -> SetVisAttributes(new G4VisAttributes(G4Colour(1.,0.,0.,0.)));
268
269
270 // Define the voxelised phantom here
271 // Replication of air Phantom Volume.
272
273 //--- Slice the phantom along Y axis
274 G4String yRepName("RepY");
275 G4VSolid* solYRep = new G4Box(yRepName,fNVoxelX*fVoxelHalfDimX,
276 fVoxelHalfDimY, fNVoxelZ*fVoxelHalfDimZ);
277 auto logYRep = new G4LogicalVolume(solYRep,matAir,yRepName);
278 new G4PVReplica(yRepName,logYRep,fContainer_logic,kYAxis, fNVoxelY,fVoxelHalfDimY*2.);
279
280 logYRep -> SetVisAttributes(new G4VisAttributes(G4VisAttributes::GetInvisible()));
281
282 //--- Slice the phantom along X axis
283 G4String xRepName("RepX");
284 G4VSolid* solXRep = new G4Box(xRepName,fVoxelHalfDimX,fVoxelHalfDimY,
285 fNVoxelZ*fVoxelHalfDimZ);
286 auto logXRep = new G4LogicalVolume(solXRep,matAir,xRepName);
287 new G4PVReplica(xRepName,logXRep,logYRep,kXAxis,fNVoxelX,fVoxelHalfDimX*2.);
288
289 logXRep -> SetVisAttributes(new G4VisAttributes(G4VisAttributes::GetInvisible()));
290
291 //----- Voxel solid and logical volumes
292 //--- Slice along Z axis
293 G4VSolid* solidVoxel = new G4Box("phantom",fVoxelHalfDimX, fVoxelHalfDimY,fVoxelHalfDimZ);
294 auto logicVoxel = new G4LogicalVolume(solidVoxel,matAir,"phantom");
295
296 logicVoxel -> SetVisAttributes(new G4VisAttributes(G4VisAttributes::GetInvisible()));
297
298 // Parameterisation to define the material of each voxel
299 G4ThreeVector halfVoxelSize(fVoxelHalfDimX,fVoxelHalfDimY,fVoxelHalfDimZ);
300
301 auto param = new ICRP110PhantomNestedParameterisation(halfVoxelSize, pMaterials);
302
303 new G4PVParameterised("phantom", // their name
304 logicVoxel, // their logical volume
305 logXRep, // Mother logical volume
306 kZAxis, // Are placed along this axis
307 fNVoxelZ, // Number of cells
308 param); // Parameterisation
309
310 param -> SetMaterialIndices(fMateIDs); // fMateIDs is the vector with Material ID associated to each voxel, from ASCII input data files.
311 param -> SetNoVoxel(fNVoxelX,fNVoxelY,fNVoxelZ);
312
313 return fMotherVolume;
314 }
315
316 void ICRP110PhantomConstruction::ReadPhantomData(const G4String& sex, const G4String& section)
317 {
318
319 // This method reads the information of ICRPdata/FemaleData.dat or
320 // ICRPdata/MaleData.data depending on the sex of the chosen phantom
321
322 fSex = sex;
323 fSection = section;
324
325 G4String dataFile;
326
327 if (fSex == "female")
328 {
329 if (fSection == "head")
330 {
331 dataFile = "ICRPdata/FemaleHead.dat";
332 }
333 else if (fSection == "trunk")
334 {
335 dataFile = "ICRPdata/FemaleTrunk.dat";
336 }
337 else if (fSection == "full")
338 {
339 dataFile = "ICRPdata/FemaleData.dat";
340 }
341 }
342 if (fSex == "male")
343 {
344 if (fSection == "head")
345 {
346 dataFile = "ICRPdata/MaleHead.dat";
347 }
348 else if (fSection == "trunk")
349 {
350 dataFile = "ICRPdata/MaleTrunk.dat";
351 }
352 else if (fSection == "full")
353 {
354 dataFile = "ICRPdata/MaleData.dat";
355 }
356 }
357
358 G4cout << "Data file " << dataFile << " is read by Detector Construction." << G4endl;
359
360 // The data.dat file in directory/build/ICRPdata/ contains the information
361 // to build the phantoms. For more details look in the README file.
362
363 //input file named finDF which consists of dataFile as a string object
364 std::ifstream finDF(dataFile.c_str());
365
366
367 G4String fname;
368
369 if(finDF.good() != 1 ) //check that the file is good and working
370 {
371 G4String descript = "Problem reading data file: "+dataFile;
372 G4Exception(" HumanPhantomConstruction::ReadPhantomData"," ",
373 FatalException,descript);
374 }
375
376 finDF >> fNoFiles;
377 G4cout << "Number of files = " << fNoFiles << G4endl;
378 finDF >> fNVoxelX; //Inputs number of X-Voxels
379 finDF >> fNVoxelY; //Y-Voxels
380 fNVoxelZ = fNoFiles; //Z-Voxels (equal to number of slice files built/read)
381 finDF >> fVoxelHalfDimX;
382 finDF >> fVoxelHalfDimY;
383 finDF >> fVoxelHalfDimZ;
384 G4cout << "Number of X,Y,Z voxels = " << fNVoxelX << ", " << fNVoxelY << ", " << fNVoxelZ <<G4endl;
385
386 fNVoxels = fNVoxelX*fNVoxelY*fNVoxelZ;
387 G4cout << "Total Number of Voxels = " << fNVoxels << G4endl;
388
389 G4int nMaterials;
390 finDF >> nMaterials;
391 G4String mateName;
392 G4int nmate;
393
394 //-----Read materials and associate with material ID number------//
395
396 for( G4int ii = 0; ii < nMaterials; ii++ ){
397 finDF >> nmate;
398 finDF >> mateName;
399
400 // This allows to skip empty spaces and tabs in the string
401 if( mateName[0] == '"' && mateName[mateName.length()-1] == '"' )
402 {
403 mateName = mateName.substr(1,mateName.length()-2);
404 }
405
406 // To uncomment for eventual debugging
407 /* G4cout << "GmReadPhantomG4Geometry::ReadPhantomData reading nmate "
408 << ii << " = " << nmate
409 << " mate " << mateName << G4endl;*/
410
411 if( ii != nmate ) {
412 G4Exception("GmReadPhantomG4Geometry::ReadPhantomData",
413 "Wrong argument",
414 FatalErrorInArgument,
415 "Material number should be in increasing order:wrong material number");
416 }
417 }
418
419 fMateIDs = new size_t[fNVoxels]; //Array with Material ID for each voxel
420
421 G4cout << "ICRP110PhantomConstruction::ReadPhantomDataFile is openining the following phantom files: " << G4endl;
422
423 for(G4int i = 0; i < fNoFiles; i++ )
424 {
425 finDF >> fname;
426 ReadPhantomDataFile(fSex, fname, i);
427 }
428
429 finDF.close();
430 }
431
432 //----------------Opens phantom ASCII slice files to construct the phantom from-----------------//
433
434 void ICRP110PhantomConstruction::ReadPhantomDataFile(const G4String& sex, const G4String& fileName, G4int numberFile)
435 {
436 G4cout << fileName << G4endl;
437
438 fSex = sex;
439
440 G4String slice;
441
442 if (fSex == "female")
443 {
444 slice = "ICRPdata/ICRP110_g4dat/AF/"+fileName;
445 }
446 if (fSex == "male")
447 {
448 slice = "ICRPdata/ICRP110_g4dat/AM/"+fileName;
449 }
450
451 std::ifstream fin(slice.c_str(), std::ios_base::in);
452
453 if( !fin.is_open() ) {
454 G4Exception("HumanPhantomConstruction::ReadPhantomDataFile",
455 "",
456 FatalErrorInArgument,
457 G4String("File not found " + fileName ).c_str());
458 }
459
460 for( G4int iy = 0; iy < fNVoxelY; iy++ ) {
461 for( G4int ix = 0; ix < fNVoxelX; ix++ ) {
462 if (ix == 0 && iy == 0)
463 {
464 G4int dudX,dudY,dudZ;
465 fin >> dudX >> dudY >> dudZ ;
466 // Dummy method to skip the first three lines of the files
467 // which are not used here
468 }
469
470 G4int nnew = ix + (iy)*fNVoxelX + numberFile*fNVoxelX*fNVoxelY;
471 G4int OrgID;
472 fin >> OrgID;
473
474 G4int mateID_out;
475
476 // The code below associates organ ID numbers (called here mateID) from ASCII slice
477 // files with material ID numbers (called here mateID_out) as defined in ICRP110PhantomMaterials
478 // Material and Organ IDs are associated as stated in AM_organs.dat and FM_organs.dat depending on
479 // the sex of the phantom (male and female, respctively)
480
481 if (OrgID==128)
482 {
483 mateID_out=1;
484 }
485
486 else if (OrgID==13 || OrgID==16 || OrgID==19 || OrgID==22 || OrgID==24 || OrgID==26 || OrgID==28 || OrgID==31 || OrgID==34 || OrgID==37 || OrgID==39 || OrgID==41 || OrgID==43 || OrgID==45 || OrgID==47 || OrgID==49 || OrgID==51 || OrgID==53 || OrgID==55)
487 {
488 mateID_out=2;
489 }
490
491 else if (OrgID==14)
492 {
493 mateID_out=3;
494 }
495
496 else if (OrgID==17)
497 {
498 mateID_out=4;
499 }
500
501 else if (OrgID==20)
502 {
503 mateID_out=5;
504 }
505
506 else if (OrgID==23)
507 {
508 mateID_out=6;
509 }
510
511 else if (OrgID==25)
512 {
513 mateID_out=7;
514 }
515
516 else if (OrgID==27)
517 {
518 mateID_out=8;
519 }
520
521 else if (OrgID==29)
522 {
523 mateID_out=9;
524 }
525
526 else if (OrgID==32)
527 {
528 mateID_out=10;
529 }
530
531 else if (OrgID==35)
532 {
533 mateID_out=11;
534 }
535
536 else if (OrgID==38)
537 {
538 mateID_out=12;
539 }
540
541 else if (OrgID==40)
542 {
543 mateID_out=13;
544 }
545
546 else if (OrgID==42)
547 {
548 mateID_out=14;
549 }
550
551 else if (OrgID==44)
552 {
553 mateID_out=15;
554 }
555
556 else if (OrgID==46)
557 {
558 mateID_out=16;
559 }
560
561 else if (OrgID==48)
562 {
563 mateID_out=17;
564 }
565
566 else if (OrgID==50)
567 {
568 mateID_out=18;
569 }
570
571 else if (OrgID==52)
572 {
573 mateID_out=19;
574 }
575
576 else if (OrgID==54)
577 {
578 mateID_out=20;
579 }
580
581 else if (OrgID==56)
582 {
583 mateID_out=21;
584 }
585
586 else if (OrgID==15 || OrgID==30)
587 {
588 mateID_out=22;
589 }
590
591 else if (OrgID==18 || OrgID==33)
592 {
593 mateID_out=23;
594 }
595
596 else if (OrgID==21)
597 {
598 mateID_out=24;
599 }
600
601 else if (OrgID==36)
602 {
603 mateID_out=25;
604 }
605
606 else if (OrgID==57 || OrgID==58 || OrgID==59 || OrgID==60)
607 {
608 mateID_out=26;
609 }
610
611 else if (OrgID==122 || OrgID==123 || OrgID==124 || OrgID==125 || OrgID==141 )
612 {
613 mateID_out=27;
614 }
615
616 else if (OrgID==9 || OrgID==10 || OrgID==11 || OrgID==12 || OrgID==88 || OrgID==96 || OrgID==98)
617 {
618 mateID_out=28;
619 }
620
621 else if (OrgID==5 || OrgID==6 || OrgID==106 || OrgID==107 || OrgID==108 || OrgID==109 || OrgID==133)
622 {
623 mateID_out=29;
624 }
625
626 else if (OrgID==95)
627 {
628 mateID_out=30;
629 }
630
631 else if (OrgID==113)
632 {
633 mateID_out=31;
634 }
635
636 else if (OrgID==61)
637 {
638 mateID_out=32;
639 }
640
641 else if (OrgID==87)
642 {
643 mateID_out=33;
644 }
645
646 else if (OrgID==66 || OrgID==67 || OrgID==68 || OrgID==69)
647 {
648 mateID_out=34;
649 }
650
651 else if (OrgID==89 || OrgID==90 || OrgID==91 || OrgID==92 || OrgID==93 || OrgID==94)
652 {
653 mateID_out=35;
654 }
655
656 else if (OrgID==72)
657 {
658 mateID_out=36;
659 }
660
661 else if (OrgID==74)
662 {
663 mateID_out=37;
664 }
665
666 else if (OrgID==76 || OrgID==78 || OrgID==80 || OrgID==82 || OrgID==84 || OrgID==86)
667 {
668 mateID_out=38;
669 }
670
671 else if (OrgID==127)
672 {
673 mateID_out=39;
674 }
675
676 else if (OrgID==132)
677 {
678 mateID_out=40;
679 }
680
681 else if (OrgID==137)
682 {
683 mateID_out=41;
684 }
685
686 else if (OrgID==111 || OrgID==112 || OrgID==129 || OrgID==130)
687 {
688 mateID_out=42;
689 }
690
691 else if (OrgID==1 || OrgID==2)
692 {
693 mateID_out=43;
694 }
695
696 else if (OrgID==110)
697 {
698 mateID_out=44;
699 }
700
701 else if (OrgID==3 || OrgID==4 || OrgID==7 || OrgID==8 || OrgID==70 || OrgID==71 || OrgID==114 || OrgID==120 || OrgID==121 || OrgID==126 || OrgID==131 || OrgID==134 || OrgID==135 || OrgID == 136)
702 {
703 mateID_out=45;
704 }
705
706 else if (OrgID==115 || OrgID==139)
707 {
708 mateID_out=46;
709 }
710
711 else if (OrgID==100 || OrgID==101 || OrgID==102 || OrgID==103 || OrgID==104 || OrgID==105)
712 {
713 mateID_out=47;
714 }
715
716 else if (OrgID==63 || OrgID==65)
717 {
718 mateID_out=48;
719 }
720
721 else if (OrgID==62 || OrgID==64 || OrgID==116 || OrgID==117 || OrgID==118 || OrgID==119)
722 {
723 mateID_out=49;
724 }
725
726 else if (OrgID==97 || OrgID==99)
727 {
728 mateID_out=50;
729 }
730
731 else if (OrgID==73 || OrgID==75 || OrgID==77 || OrgID==79 || OrgID==81 || OrgID==83 || OrgID==85)
732 {
733 mateID_out=51;
734 }
735
736 else if (OrgID==138)
737 {
738 mateID_out=52;
739 }
740
741 else if (OrgID==0 || OrgID==140)
742 {
743 mateID_out=0;
744 }
745
746 else
747 {
748 mateID_out=OrgID;
749 }
750
751 G4int nMaterials = 53;
752 if( mateID_out < 0 || mateID_out >= nMaterials ) {
753 G4Exception("GmReadPhantomG4Geometry::ReadPhantomData",
754 "Wrong index in phantom file",
755 FatalException,
756 G4String("It should be between 0 and "
757 + G4UIcommand::ConvertToString(nMaterials-1)
758 + ", while it is "
759 + G4UIcommand::ConvertToString(OrgID)).c_str());
760
761 //-------------Store Material IDs and position/reference number within phantom in vector---------------//
762 }
763
764 fMateIDs[nnew] = mateID_out;
765
766
767 }
768 }
769 }
770
771 //-----------Define phantom sex (male or female) to be constructed-------------//
772 void ICRP110PhantomConstruction::SetPhantomSex(G4String newSex)
773 {
774 fSex = newSex;
775
776 if (fSex == "male")
777 {
778 G4cout << ">> Male Phantom will be built." << G4endl;
779 }
780 if (fSex == "female")
781 {
782 G4cout << ">> Female Phantom will be built." << G4endl;
783 }
784 if ((fSex != "female") && (fSex != "male"))
785 G4cout << fSex << " is not defined!" << G4endl;
786 }
787
788 //-----------Define phantom section to be constructed-------------//
789 void ICRP110PhantomConstruction::SetPhantomSection(G4String newSection)
790 {
791 fSection = newSection;
792 if (fSection == "head")
793 {
794 G4cout << ">> Partial Head Phantom will be built." << G4endl;
795 }
796 if (fSection == "trunk")
797 {
798 G4cout << ">> Partial Trunk Phantom will be built." << G4endl;
799 }
800 if (fSection == "full")
801 {
802 G4cout << ">> Full/Custom Phantom will be built." << G4endl;
803 }
804 if ((fSection != "head") && (fSection != "trunk") && (fSection != "full"))
805 G4cout << fSection << " is not defined!" << G4endl;
806
807 }
808