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Geant4/processes/electromagnetic/dna/utils/src/G4DNADamage.cc

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Diff markup

Differences between /processes/electromagnetic/dna/utils/src/G4DNADamage.cc (Version 11.3.0) and /processes/electromagnetic/dna/utils/src/G4DNADamage.cc (Version 10.6.p3)


  1 //                                                  1 //
  2 // *******************************************      2 // ********************************************************************
  3 // * License and Disclaimer                         3 // * License and Disclaimer                                           *
  4 // *                                                4 // *                                                                  *
  5 // * The  Geant4 software  is  copyright of th      5 // * The  Geant4 software  is  copyright of the Copyright Holders  of *
  6 // * the Geant4 Collaboration.  It is provided      6 // * the Geant4 Collaboration.  It is provided  under  the terms  and *
  7 // * conditions of the Geant4 Software License      7 // * conditions of the Geant4 Software License,  included in the file *
  8 // * LICENSE and available at  http://cern.ch/      8 // * LICENSE and available at  http://cern.ch/geant4/license .  These *
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 11 // * Neither the authors of this software syst     11 // * Neither the authors of this software system, nor their employing *
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 15 // * use.  Please see the license in the file      15 // * use.  Please see the license in the file  LICENSE  and URL above *
 16 // * for the full disclaimer and the limitatio     16 // * for the full disclaimer and the limitation of liability.         *
 17 // *                                               17 // *                                                                  *
 18 // * This  code  implementation is the result      18 // * This  code  implementation is the result of  the  scientific and *
 19 // * technical work of the GEANT4 collaboratio     19 // * technical work of the GEANT4 collaboration.                      *
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 24 // *******************************************     24 // ********************************************************************
 25 //                                                 25 //
 26 //                                                 26 //
 27 #include "G4DNADamage.hh"                          27 #include "G4DNADamage.hh"
 28 #include "G4UnitsTable.hh"                         28 #include "G4UnitsTable.hh"
 29                                                    29 
 30 G4ThreadLocal G4DNADamage* G4DNADamage::fpInst <<  30 G4ThreadLocal G4DNADamage* G4DNADamage::fpInstance(0);
 31                                                    31 
 32 G4DNAIndirectHit::G4DNAIndirectHit(const G4Str     32 G4DNAIndirectHit::G4DNAIndirectHit(const G4String& baseName,
 33                                    const G4Mol     33                                    const G4Molecule* molecule,
 34                                    const G4Thr     34                                    const G4ThreeVector& position,
 35                                    G4double ti     35                                    G4double time) :
 36      fpMolecule(molecule)                      <<  36     G4VDNAHit(), fpMolecule(molecule)
 37 {                                                  37 {
 38   fBaseName = baseName;                            38   fBaseName = baseName;
 39   fPosition = position;                            39   fPosition = position;
 40   fTime = time;                                    40   fTime = time;
 41 }                                                  41 }
 42                                                    42 
 43 G4DNAIndirectHit::~G4DNAIndirectHit()              43 G4DNAIndirectHit::~G4DNAIndirectHit()
 44 {                                                  44 {
 45   delete fpMolecule;                           <<  45   if (fpMolecule) delete fpMolecule;
 46   fpMolecule = nullptr;                        <<  46   fpMolecule = 0;
 47 }                                                  47 }
 48                                                    48 
 49 void G4DNAIndirectHit::Print()                     49 void G4DNAIndirectHit::Print()
 50 {                                                  50 {
 51   G4cout << "Reaction : " << fpMolecule->GetNa     51   G4cout << "Reaction : " << fpMolecule->GetName() << " + " << fBaseName
 52          << " at position : " << G4BestUnit(fP     52          << " at position : " << G4BestUnit(fPosition, "Length")
 53          << " and time : " << G4BestUnit(fTime     53          << " and time : " << G4BestUnit(fTime, "Time") << G4endl;
 54 }                                                  54 }
 55                                                    55 
 56 G4DNADamage* G4DNADamage::Instance()               56 G4DNADamage* G4DNADamage::Instance()
 57 {                                                  57 {
 58   if (fpInstance == nullptr) new G4DNADamage() <<  58   if (!fpInstance) new G4DNADamage();
 59                                                    59 
 60   return fpInstance;                               60   return fpInstance;
 61 }                                                  61 }
 62                                                    62 
 63 G4DNADamage::G4DNADamage()                         63 G4DNADamage::G4DNADamage()
 64 {                                                  64 {
 65   fJustCountDamage = false;                        65   fJustCountDamage = false;
 66   fNIndirectDamage = 0;                            66   fNIndirectDamage = 0;
 67   fpInstance = this;                               67   fpInstance = this;
 68 }                                                  68 }
 69                                                    69 
 70 G4DNADamage::~G4DNADamage()                        70 G4DNADamage::~G4DNADamage()
 71 {                                                  71 {
 72   for (auto & fIndirectHit : fIndirectHits)    <<  72   for (int i = 0; i < (int) fIndirectHits.size(); i++)
 73   {                                                73   {
 74     delete fIndirectHit;                       <<  74     if (fIndirectHits[i]) delete fIndirectHits[i];
 75   }                                                75   }
 76   fIndirectHits.clear();                           76   fIndirectHits.clear();
 77 }                                                  77 }
 78                                                    78 
 79 void G4DNADamage::DeleteInstance()                 79 void G4DNADamage::DeleteInstance()
 80 {                                                  80 {
 81   delete fpInstance;                           <<  81   if (fpInstance) delete fpInstance;
 82   fpInstance = nullptr;                        <<  82   fpInstance = 0;
 83 }                                                  83 }
 84                                                    84 
 85 void G4DNADamage::Reset()                          85 void G4DNADamage::Reset()
 86 {                                                  86 {
 87   fNIndirectDamage = 0;                            87   fNIndirectDamage = 0;
 88   for (auto & fIndirectHit : fIndirectHits)    <<  88   for (int i = 0; i < (int) fIndirectHits.size(); i++)
 89   {                                                89   {
 90     delete fIndirectHit;                       <<  90     if (fIndirectHits[i]) delete fIndirectHits[i];
 91   }                                                91   }
 92   fIndirectHits.clear();                           92   fIndirectHits.clear();
 93 }                                                  93 }
 94                                                    94 
 95 void G4DNADamage::AddIndirectDamage(const G4St     95 void G4DNADamage::AddIndirectDamage(const G4String& baseName,
 96                                     const G4Mo     96                                     const G4Molecule* molecule,
 97                                     const G4Th     97                                     const G4ThreeVector& position,
 98                                     G4double t     98                                     G4double time)
 99 {                                                  99 {
100   if (fJustCountDamage)                           100   if (fJustCountDamage)
101   {                                               101   {
102     fNIndirectDamage++;                           102     fNIndirectDamage++;
103     return;                                       103     return;
104   }                                               104   }
105                                                   105 
106   G4DNAIndirectHit* indirectHit = nullptr;     << 106   G4DNAIndirectHit* indirectHit = 0;
107   auto it = fMolMap.find(*molecule);           << 107   std::map<G4Molecule, const G4Molecule*>::iterator it = 
                                                   >> 108    fMolMap.find(*molecule);
108                                                   109 
109   if (it == fMolMap.cend())                    << 110   if (it == fMolMap.end())
110   {                                               111   {
111     G4Molecule* mol(nullptr);                  << 112     G4Molecule* mol(0);
112     fMolMap[*molecule] = (mol = new G4Molecule    113     fMolMap[*molecule] = (mol = new G4Molecule(*molecule));
113     indirectHit = new G4DNAIndirectHit(baseNam    114     indirectHit = new G4DNAIndirectHit(baseName, mol, position, time);
114   }                                               115   }
115   else                                            116   else
116   {                                               117   {
117     indirectHit = new G4DNAIndirectHit(baseNam    118     indirectHit = new G4DNAIndirectHit(baseName, it->second, position, time);
118   }                                               119   }
119   fIndirectHits.push_back(indirectHit);           120   fIndirectHits.push_back(indirectHit);
120 }                                                 121 }
121                                                   122