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Geant4/examples/extended/medical/dna/neuron/src/ITTrackingAction.cc

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Diff markup

Differences between /examples/extended/medical/dna/neuron/src/ITTrackingAction.cc (Version 11.3.0) and /examples/extended/medical/dna/neuron/src/ITTrackingAction.cc (Version 9.4.p4)


  1 //                                                  1 
  2 // *******************************************    
  3 // * License and Disclaimer                       
  4 // *                                              
  5 // * The  Geant4 software  is  copyright of th    
  6 // * the Geant4 Collaboration.  It is provided    
  7 // * conditions of the Geant4 Software License    
  8 // * LICENSE and available at  http://cern.ch/    
  9 // * include a list of copyright holders.         
 10 // *                                              
 11 // * Neither the authors of this software syst    
 12 // * institutes,nor the agencies providing fin    
 13 // * work  make  any representation or  warran    
 14 // * regarding  this  software system or assum    
 15 // * use.  Please see the license in the file     
 16 // * for the full disclaimer and the limitatio    
 17 // *                                              
 18 // * This  code  implementation is the result     
 19 // * technical work of the GEANT4 collaboratio    
 20 // * By using,  copying,  modifying or  distri    
 21 // * any work based  on the software)  you  ag    
 22 // * use  in  resulting  scientific  publicati    
 23 // * acceptance of all terms of the Geant4 Sof    
 24 // *******************************************    
 25 //                                                
 26 // This example is provided by the Geant4-DNA     
 27 // Any report or published results obtained us    
 28 // shall cite the following Geant4-DNA collabo    
 29 // Med. Phys. 37 (2010) 4692-4708                 
 30 // and papers                                     
 31 // M. Batmunkh et al. J Radiat Res Appl Sci 8     
 32 // O. Belov et al. Physica Medica 32 (2016) 15    
 33 // The Geant4-DNA web site is available at htt    
 34 //                                                
 35 // -------------------------------------------    
 36 // November 2016                                  
 37 // -------------------------------------------    
 38 //                                                
 39 //                                                
 40 /// \file ITTrackingAction.hh                     
 41 /// \brief Implementation of the ITTrackingAct    
 42                                                   
 43 #include "ITTrackingAction.hh"                    
 44                                                   
 45 #include "G4Molecule.hh"                          
 46 #include "G4PhysicalConstants.hh"                 
 47 #include "G4SystemOfUnits.hh"                     
 48 #include "G4Track.hh"                             
 49 #include "G4UnitsTable.hh"                        
 50 //                                                
 51 // #include "NeuronHitCompartments.hh"            
 52 #include "Run.hh"                                 
 53                                                   
 54 #include "G4H2O.hh"                               
 55 #include "G4LogicalVolume.hh"                     
 56 #include "G4LogicalVolumeStore.hh"                
 57 #include "G4MoleculeCounter.hh"                   
 58 #include "G4MoleculeGun.hh"                       
 59 #include "G4MoleculeTable.hh"                     
 60 #include "G4PhysicalVolumeStore.hh"               
 61 #include "G4RunManager.hh"                        
 62 #include "G4VPhysicalVolume.hh"                   
 63                                                   
 64 #include <G4Scheduler.hh>                         
 65 #include <cmath>                                  
 66                                                   
 67 //....oooOO0OOooo........oooOO0OOooo........oo    
 68                                                   
 69 ITTrackingAction::ITTrackingAction() : G4UserT    
 70                                                   
 71 //....oooOO0OOooo........oooOO0OOooo........oo    
 72                                                   
 73 ITTrackingAction::~ITTrackingAction() {}          
 74                                                   
 75 //....oooOO0OOooo........oooOO0OOooo........oo    
 76                                                   
 77 void ITTrackingAction::PreUserTrackingAction(c    
 78 {                                                 
 79   // Target volumes                               
 80   G4VPhysicalVolume* volumeStep = track->GetTo    
 81   G4VPhysicalVolume* volumeMedium = G4Physical    
 82   G4VPhysicalVolume* volumeSlice = G4PhysicalV    
 83                                                   
 84   // count produced species in neuron             
 85   G4Molecule* molecule = GetMolecule(track);      
 86   // const G4String& moleculeName = molecule->    
 87   // G4double GTime  = track->GetGlobalTime()     
 88                                                   
 89   Run* run = static_cast<Run*>(G4RunManager::G    
 90   // run->MoleculeCount(moleculeName,GTime);      
 91                                                   
 92   // time steps                                   
 93                                                   
 94   // particles outside neuron structure           
 95   // if (volumeStep == volumeMedium || volumeS    
 96   //{                                             
 97   // run->MoleculeCount(molecule);                
 98   //}                                             
 99   // count secondary particles in neuron          
100   // else //                                      
101   if (volumeStep != volumeMedium && volumeStep    
102     run->MoleculeCountNeuron(molecule);           
103     // run->MoleculeCountNeuron(moleculeName,G    
104                                                   
105     // number of molecules at time of 1 ns !      
106     // if ( (GTime > T_1ns-3.) && (GTime <= T_    
107     // {                                          
108     //  if (moleculeName =="OH^0") // OH* radi    
109     //  {                                         
110     // fEventAction->MoleculeCountNeuron()        
111     // G4MoleculeCounter::Instance()->GetNMole    
112                                                   
113     //   }                                        
114     // }                                          
115   }                                               
116 }                                                 
117                                                   
118 //....oooOO0OOooo........oooOO0OOooo........oo    
119                                                   
120 void ITTrackingAction::PostUserTrackingAction(    
121