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Geant4/examples/extended/medical/dna/clustering/src/ClusteringAlgoMessenger.cc

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Diff markup

Differences between /examples/extended/medical/dna/clustering/src/ClusteringAlgoMessenger.cc (Version 11.3.0) and /examples/extended/medical/dna/clustering/src/ClusteringAlgoMessenger.cc (Version 10.3.p1)


  1 //                                                  1 //
  2 // *******************************************      2 // ********************************************************************
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  4 // *                                                4 // *                                                                  *
  5 // * The  Geant4 software  is  copyright of th      5 // * The  Geant4 software  is  copyright of the Copyright Holders  of *
  6 // * the Geant4 Collaboration.  It is provided      6 // * the Geant4 Collaboration.  It is provided  under  the terms  and *
  7 // * conditions of the Geant4 Software License      7 // * conditions of the Geant4 Software License,  included in the file *
  8 // * LICENSE and available at  http://cern.ch/      8 // * LICENSE and available at  http://cern.ch/geant4/license .  These *
  9 // * include a list of copyright holders.           9 // * include a list of copyright holders.                             *
 10 // *                                               10 // *                                                                  *
 11 // * Neither the authors of this software syst     11 // * Neither the authors of this software system, nor their employing *
 12 // * institutes,nor the agencies providing fin     12 // * institutes,nor the agencies providing financial support for this *
 13 // * work  make  any representation or  warran     13 // * work  make  any representation or  warranty, express or implied, *
 14 // * regarding  this  software system or assum     14 // * regarding  this  software system or assume any liability for its *
 15 // * use.  Please see the license in the file      15 // * use.  Please see the license in the file  LICENSE  and URL above *
 16 // * for the full disclaimer and the limitatio     16 // * for the full disclaimer and the limitation of liability.         *
 17 // *                                               17 // *                                                                  *
 18 // * This  code  implementation is the result      18 // * This  code  implementation is the result of  the  scientific and *
 19 // * technical work of the GEANT4 collaboratio     19 // * technical work of the GEANT4 collaboration.                      *
 20 // * By using,  copying,  modifying or  distri     20 // * By using,  copying,  modifying or  distributing the software (or *
 21 // * any work based  on the software)  you  ag     21 // * any work based  on the software)  you  agree  to acknowledge its *
 22 // * use  in  resulting  scientific  publicati     22 // * use  in  resulting  scientific  publications,  and indicate your *
 23 // * acceptance of all terms of the Geant4 Sof     23 // * acceptance of all terms of the Geant4 Software license.          *
 24 // *******************************************     24 // ********************************************************************
 25 //                                                 25 //
 26 // This example is provided by the Geant4-DNA      26 // This example is provided by the Geant4-DNA collaboration
 27 // Any report or published results obtained us     27 // Any report or published results obtained using the Geant4-DNA software
 28 // shall cite the following Geant4-DNA collabo     28 // shall cite the following Geant4-DNA collaboration publication:
 29 // Med. Phys. 37 (2010) 4692-4708                  29 // Med. Phys. 37 (2010) 4692-4708
 30 // The Geant4-DNA web site is available at htt     30 // The Geant4-DNA web site is available at http://geant4-dna.org
 31 //                                                 31 //
                                                   >>  32 // $Id$
 32 //                                                 33 //
 33 /// \file ClusteringAlgoMessenger.cc               34 /// \file ClusteringAlgoMessenger.cc
 34 /// \brief Implementation of the ClusteringAlg     35 /// \brief Implementation of the ClusteringAlgoMessenger class
 35                                                    36 
 36 #include "ClusteringAlgoMessenger.hh"              37 #include "ClusteringAlgoMessenger.hh"
 37                                                    38 
 38 #include "ClusteringAlgo.hh"                       39 #include "ClusteringAlgo.hh"
 39                                                    40 
                                                   >>  41 #include "G4UIcmdWithAnInteger.hh"
 40 #include "G4UIcmdWithADouble.hh"                   42 #include "G4UIcmdWithADouble.hh"
 41 #include "G4UIcmdWithADoubleAndUnit.hh"            43 #include "G4UIcmdWithADoubleAndUnit.hh"
 42 #include "G4UIcmdWithAnInteger.hh"             << 
 43 #include "G4UIdirectory.hh"                        44 #include "G4UIdirectory.hh"
 44                                                    45 
                                                   >>  46 
 45 //....oooOO0OOooo........oooOO0OOooo........oo     47 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
 46                                                    48 
 47 ClusteringAlgoMessenger::ClusteringAlgoMesseng     49 ClusteringAlgoMessenger::ClusteringAlgoMessenger(ClusteringAlgo* pClustAlgo)
 48   : G4UImessenger(), fpClusteringAlgo(pClustAl <<  50 :G4UImessenger(),fpClusteringAlgo(pClustAlgo)
 49 {                                                  51 {
 50   fpAppliDir = new G4UIdirectory("/clustering/     52   fpAppliDir = new G4UIdirectory("/clustering/");
 51   fpAppliDir->SetGuidance("commands specific t     53   fpAppliDir->SetGuidance("commands specific to this example");
 52                                                    54 
 53   fpMinPtsCmd = new G4UIcmdWithAnInteger("/clu <<  55   fpMinPtsCmd = new G4UIcmdWithAnInteger("/clustering/algo/setMinPts",this);
 54   fpMinPtsCmd->SetGuidance("Minimal number of      56   fpMinPtsCmd->SetGuidance("Minimal number of points to create a cluster");
 55   fpMinPtsCmd->SetParameterName("MinPts", fals <<  57   fpMinPtsCmd->SetParameterName("MinPts",false);
 56   fpMinPtsCmd->SetRange("MinPts>0");               58   fpMinPtsCmd->SetRange("MinPts>0");
 57   fpMinPtsCmd->AvailableForStates(G4State_Idle     59   fpMinPtsCmd->AvailableForStates(G4State_Idle);
 58                                                    60 
 59   fpProbCmd = new G4UIcmdWithADouble("/cluster <<  61   fpProbCmd = new G4UIcmdWithADouble("/clustering/algo/setSelectionProb",this);
 60   fpProbCmd->SetGuidance(                      <<  62   fpProbCmd->SetGuidance("Probability to select potential "
 61     "Probability to select potential "         <<  63       "damage according to the geometry");
 62     "damage according to the geometry");       <<  64   fpProbCmd->SetParameterName("Prob",false);
 63   fpProbCmd->SetParameterName("Prob", false);  << 
 64   fpProbCmd->SetRange("Prob>0");                   65   fpProbCmd->SetRange("Prob>0");
 65   fpProbCmd->AvailableForStates(G4State_Idle);     66   fpProbCmd->AvailableForStates(G4State_Idle);
 66                                                    67 
 67   fpEpsCmd = new G4UIcmdWithADoubleAndUnit("/c <<  68   fpEpsCmd = new G4UIcmdWithADoubleAndUnit("/clustering/algo/setEps",this);
 68   fpEpsCmd->SetGuidance("Maximal distance betw     69   fpEpsCmd->SetGuidance("Maximal distance between points to create a cluster");
 69   fpEpsCmd->SetParameterName("Eps", false);    <<  70   fpEpsCmd->SetParameterName("Eps",false);
 70   fpEpsCmd->SetRange("Eps>0");                     71   fpEpsCmd->SetRange("Eps>0");
 71   fpEpsCmd->AvailableForStates(G4State_Idle);      72   fpEpsCmd->AvailableForStates(G4State_Idle);
 72                                                    73 
 73   fpEminCmd = new G4UIcmdWithADoubleAndUnit("/ <<  74   fpEminCmd = new G4UIcmdWithADoubleAndUnit("/clustering/algo/setEmin",this);
 74   fpEminCmd->SetGuidance(                      <<  75   fpEminCmd->SetGuidance("Energy to have a probability "
 75     "Energy to have a probability "            <<  76       "to create a strand break = 0");
 76     "to create a strand break = 0");           <<  77   fpEminCmd->SetParameterName("Emin",false);
 77   fpEminCmd->SetParameterName("Emin", false);  << 
 78   fpEminCmd->SetRange("Emin>=0");                  78   fpEminCmd->SetRange("Emin>=0");
 79   fpEminCmd->AvailableForStates(G4State_Idle);     79   fpEminCmd->AvailableForStates(G4State_Idle);
 80                                                    80 
 81   fpEmaxCmd = new G4UIcmdWithADoubleAndUnit("/ <<  81   fpEmaxCmd = new G4UIcmdWithADoubleAndUnit("/clustering/algo/setEmax",this);
 82   fpEmaxCmd->SetGuidance(                      <<  82   fpEmaxCmd->SetGuidance("Energy to have a probability "
 83     "Energy to have a probability "            <<  83       "to create a strand break = 1");
 84     "to create a strand break = 1");           <<  84   fpEmaxCmd->SetParameterName("Emax",false);
 85   fpEmaxCmd->SetParameterName("Emax", false);  << 
 86   fpEmaxCmd->SetRange("Emax>=0");                  85   fpEmaxCmd->SetRange("Emax>=0");
 87   fpEmaxCmd->AvailableForStates(G4State_Idle);     86   fpEmaxCmd->AvailableForStates(G4State_Idle);
 88 }                                                  87 }
 89                                                    88 
 90 //....oooOO0OOooo........oooOO0OOooo........oo     89 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
 91                                                    90 
 92 ClusteringAlgoMessenger::~ClusteringAlgoMessen     91 ClusteringAlgoMessenger::~ClusteringAlgoMessenger()
 93 {                                                  92 {
 94   delete fpMinPtsCmd;                              93   delete fpMinPtsCmd;
 95   delete fpProbCmd;                                94   delete fpProbCmd;
 96   delete fpEpsCmd;                                 95   delete fpEpsCmd;
 97   delete fpEminCmd;                                96   delete fpEminCmd;
 98   delete fpEmaxCmd;                                97   delete fpEmaxCmd;
 99   delete fpAppliDir;                               98   delete fpAppliDir;
100 }                                                  99 }
101                                                   100 
102 //....oooOO0OOooo........oooOO0OOooo........oo    101 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
103                                                   102 
104 void ClusteringAlgoMessenger::SetNewValue(G4UI << 103 void ClusteringAlgoMessenger::SetNewValue(G4UIcommand* pCommand,
105 {                                              << 104     G4String pNewValue)
106   if (pCommand == fpMinPtsCmd) {               << 105 { 
                                                   >> 106   if(pCommand == fpMinPtsCmd)
                                                   >> 107   {
107     fpClusteringAlgo->SetMinPts(fpMinPtsCmd->G    108     fpClusteringAlgo->SetMinPts(fpMinPtsCmd->GetNewIntValue(pNewValue));
108   }                                               109   }
109   if (pCommand == fpProbCmd) {                 << 110   if(pCommand == fpProbCmd)
                                                   >> 111   {
110     fpClusteringAlgo->SetSPointsProb(fpProbCmd    112     fpClusteringAlgo->SetSPointsProb(fpProbCmd->GetNewDoubleValue(pNewValue));
111   }                                               113   }
112   if (pCommand == fpEpsCmd) {                  << 114   if(pCommand == fpEpsCmd)
                                                   >> 115   {
113     fpClusteringAlgo->SetEps(fpEpsCmd->GetNewD    116     fpClusteringAlgo->SetEps(fpEpsCmd->GetNewDoubleValue(pNewValue));
114   }                                               117   }
115   if (pCommand == fpEminCmd) {                 << 118   if(pCommand == fpEminCmd)
                                                   >> 119   {
116     fpClusteringAlgo->SetEMinDamage(fpEminCmd-    120     fpClusteringAlgo->SetEMinDamage(fpEminCmd->GetNewDoubleValue(pNewValue));
117   }                                               121   }
118   if (pCommand == fpEmaxCmd) {                 << 122   if(pCommand == fpEmaxCmd)
                                                   >> 123   {
119     fpClusteringAlgo->SetEMaxDamage(fpEmaxCmd-    124     fpClusteringAlgo->SetEMaxDamage(fpEmaxCmd->GetNewDoubleValue(pNewValue));
120   }                                               125   }
121 }                                                 126 }
                                                   >> 127 
122                                                   128