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1 // 1 //
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24 // ******************************************* 24 // ********************************************************************
25 // 25 //
26 // 26 //
27 #include "TimeStepAction.hh" 27 #include "TimeStepAction.hh"
28 <<
29 #include "PulseAction.hh" <<
30 <<
31 #include "G4DNAEventScheduler.hh" 28 #include "G4DNAEventScheduler.hh"
32 #include "G4DNAGillespieDirectMethod.hh" 29 #include "G4DNAGillespieDirectMethod.hh"
33 #include "G4DNAMolecularReactionTable.hh" 30 #include "G4DNAMolecularReactionTable.hh"
34 #include "G4EventManager.hh" <<
35 #include "G4ITLeadingTracks.hh" 31 #include "G4ITLeadingTracks.hh"
36 #include "G4MoleculeCounter.hh" << 32 #include "G4ITTransportationManager.hh"
37 #include "G4Scheduler.hh" <<
38 #include "G4SystemOfUnits.hh" 33 #include "G4SystemOfUnits.hh"
39 #include "G4Track.hh" 34 #include "G4Track.hh"
40 #include "G4UnitsTable.hh" <<
41 #include "G4VChemistryWorld.hh" <<
42 #include "G4VPrimitiveScorer.hh" 35 #include "G4VPrimitiveScorer.hh"
>> 36 #include "G4Scheduler.hh"
>> 37 #include "PulseAction.hh"
>> 38 #include "G4MoleculeCounter.hh"
>> 39 #include "G4VChemistryWorld.hh"
43 40
44 TimeStepAction::TimeStepAction(const G4VChemis << 41 TimeStepAction::TimeStepAction(const G4VChemistryWorld *pChemWorld, PulseAction *pPulse)
45 : G4UserTimeStepAction(), fpPulse(pPulse), f << 42 : G4UserTimeStepAction(), fpPulse(pPulse), fpChemWorld(pChemWorld) {
46 { <<
47 fpEventScheduler = std::make_unique<G4DNAEve 43 fpEventScheduler = std::make_unique<G4DNAEventScheduler>();
48 fScheduler = G4Scheduler::Instance(); <<
49 } 44 }
50 45
51 //....oooOO0OOooo........oooOO0OOooo........oo 46 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
52 <<
53 void TimeStepAction::UserPreTimeStepAction() { 47 void TimeStepAction::UserPreTimeStepAction() {}
54 48
55 //....oooOO0OOooo........oooOO0OOooo........oo << 49 void TimeStepAction::UserPostTimeStepAction() {
56 <<
57 void TimeStepAction::UserPostTimeStepAction() <<
58 { <<
59 G4double T1 = 5 * CLHEP::ns; 50 G4double T1 = 5 * CLHEP::ns;
60 if (fpPulse != nullptr && fpPulse->IsActived 51 if (fpPulse != nullptr && fpPulse->IsActivedPulse()) {
61 G4MoleculeCounter::Instance()->Use(false); 52 G4MoleculeCounter::Instance()->Use(false);
62 // we don't count molecules during the pul << 53 //we don't count molecules during the pulse
63 T1 = fpPulse->GetLonggestDelayedTime() + 5 54 T1 = fpPulse->GetLonggestDelayedTime() + 5 * CLHEP::ns;
64 } 55 }
65 // T1: time to start mesoscopic model 56 // T1: time to start mesoscopic model
66 if (fScheduler->GetGlobalTime() >= T1) { << 57 if (G4Scheduler::Instance()->GetGlobalTime() >= T1) {
67 CompartmentBased(); 58 CompartmentBased();
68 } 59 }
69 } 60 }
70 61
71 //....oooOO0OOooo........oooOO0OOooo........oo << 62 void TimeStepAction::UserReactionAction(
72 << 63 const G4Track & /*a*/, const G4Track & /*b*/,
73 void TimeStepAction::UserReactionAction(const << 64 const std::vector<G4Track *> * /*products*/) {}
74 const <<
75 {} <<
76 <<
77 //....oooOO0OOooo........oooOO0OOooo........oo <<
78 65
79 void TimeStepAction::EndProcessing() {} 66 void TimeStepAction::EndProcessing() {}
80 67
81 //....oooOO0OOooo........oooOO0OOooo........oo << 68 void TimeStepAction::CompartmentBased() {
82 <<
83 void TimeStepAction::CompartmentBased() <<
84 { <<
85 SetInitialPixel(); 69 SetInitialPixel();
86 fpEventScheduler->SetVerbose(fScheduler->Get << 70 fpEventScheduler->SetVerbose(G4Scheduler::Instance()->GetVerbose());
87 fpEventScheduler->SetStartTime(fScheduler->G << 71 fpEventScheduler->SetStartTime(G4Scheduler::Instance()->GetGlobalTime()); // continue from globalTime
88 fpEventScheduler->SetEndTime(fScheduler->Get << 72 fpEventScheduler->SetEndTime(G4Scheduler::Instance()->GetEndTime() - 1 * ps);
89 fpEventScheduler->SetChangeMesh(true); 73 fpEventScheduler->SetChangeMesh(true);
90 fpEventScheduler->Initialize(*fpChemWorld->G 74 fpEventScheduler->Initialize(*fpChemWorld->GetChemistryBoundary(), fPixel);
91 fpEventScheduler->Run(); 75 fpEventScheduler->Run();
92 fScheduler->Stop(); << 76 G4Scheduler::Instance()->Stop();
93 } 77 }
94 78
95 //....oooOO0OOooo........oooOO0OOooo........oo << 79 G4DNAEventScheduler *TimeStepAction::GetEventScheduler() const {
96 <<
97 G4DNAEventScheduler* TimeStepAction::GetEventS <<
98 { <<
99 return fpEventScheduler.get(); 80 return fpEventScheduler.get();
100 } 81 }
101 82
102 //....oooOO0OOooo........oooOO0OOooo........oo << 83 void TimeStepAction::SetInitialPixel() {
103 <<
104 void TimeStepAction::SetInitialPixel() <<
105 { <<
106 auto pBoundingBox = fpChemWorld->GetChemistr 84 auto pBoundingBox = fpChemWorld->GetChemistryBoundary();
107 G4double Box = pBoundingBox->halfSideLengthI 85 G4double Box = pBoundingBox->halfSideLengthInX();
108 if (Box == 1.6 * um) { 86 if (Box == 1.6 * um) {
109 fPixel = 512; // for CONV << 87 fPixel = 512;// for CONV
110 } << 88 } else if (Box == 0.8 * um) {
111 else if (Box == 0.8 * um) { << 89 fPixel = 256;// for FLASH
112 fPixel = 256; // for FLASH << 90 } else {
113 } <<
114 else { <<
115 G4cout << "Box : " << *pBoundingBox << " 91 G4cout << "Box : " << *pBoundingBox << " Pixel : " << fPixel << G4endl;
116 G4Exception("This chem volume is not optim 92 G4Exception("This chem volume is not optimized and the result may be incorrect.",
117 "TimeStepAction::TimeStepActio 93 "TimeStepAction::TimeStepAction", FatalException, "");
118 } 94 }
119 // 512 : for conventional dose rate 95 // 512 : for conventional dose rate
120 // 256 : for higher dose rate 96 // 256 : for higher dose rate
121 } 97 }
122 <<
123 //....oooOO0OOooo........oooOO0OOooo........oo <<
124 <<
125 void TimeStepAction::StartProcessing() <<
126 { <<
127 auto currentEvent = G4EventManager::GetEvent <<
128 if (currentEvent->GetConstCurrentEvent()->Is <<
129 G4cout << "This event is fully aborted" << <<
130 fScheduler->Stop(); <<
131 } <<
132 } <<
133 <<
134 //....oooOO0OOooo........oooOO0OOooo........oo <<
135 98