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Please see the license in the file LICENSE and URL above * 16 // * for the full disclaimer and the limitatio 16 // * for the full disclaimer and the limitation of liability. * 17 // * 17 // * * 18 // * This code implementation is the result 18 // * This code implementation is the result of the scientific and * 19 // * technical work of the GEANT4 collaboratio 19 // * technical work of the GEANT4 collaboration. * 20 // * By using, copying, modifying or distri 20 // * By using, copying, modifying or distributing the software (or * 21 // * any work based on the software) you ag 21 // * any work based on the software) you agree to acknowledge its * 22 // * use in resulting scientific publicati 22 // * use in resulting scientific publications, and indicate your * 23 // * acceptance of all terms of the Geant4 Sof 23 // * acceptance of all terms of the Geant4 Software license. * 24 // ******************************************* 24 // ******************************************************************** 25 // 25 // 26 // << 27 /// \file medical/DICOM/src/DicomDetectorCons << 28 /// \brief Implementation of the DicomDetector << 29 // << 30 26 31 #include "DicomDetectorConstruction.hh" << 27 #include "globals.hh" 32 << 33 #include "CLHEP/Units/SystemOfUnits.h" << 34 #include "DicomHandler.hh" << 35 #include "DicomPhantomZSliceHeader.hh" << 36 28 37 #include "G4Box.hh" 29 #include "G4Box.hh" 38 #include "G4Element.hh" << 39 #include "G4LogicalVolume.hh" 30 #include "G4LogicalVolume.hh" 40 #include "G4Material.hh" << 31 #include "G4VPhysicalVolume.hh" 41 #include "G4NistManager.hh" << 42 #include "G4PVPlacement.hh" 32 #include "G4PVPlacement.hh" 43 #include "G4PhysicalConstants.hh" << 33 #include "G4Material.hh" >> 34 #include "G4Element.hh" 44 #include "G4UIcommand.hh" 35 #include "G4UIcommand.hh" 45 #include "G4VPhysicalVolume.hh" << 46 #include "globals.hh" << 47 << 48 #ifdef G4_DCMTK << 49 # include "DicomFileMgr.hh" << 50 #endif << 51 #include "G4VisAttributes.hh" << 52 36 53 using CLHEP::cm3; << 37 #include "DicomDetectorConstruction.hh" 54 using CLHEP::g; << 38 #include "DicomPhantomZSliceHeader.hh" 55 using CLHEP::m; << 56 using CLHEP::mg; << 57 using CLHEP::mole; << 58 using CLHEP::perCent; << 59 39 60 //....oooOO0OOooo........oooOO0OOooo........oo << 40 //------------------------------------------------------------- 61 DicomDetectorConstruction::DicomDetectorConstr 41 DicomDetectorConstruction::DicomDetectorConstruction() 62 : G4VUserDetectorConstruction(), << 42 { 63 fAir(0), << 43 } 64 << 65 fWorld_solid(0), << 66 fWorld_logic(0), << 67 fWorld_phys(0), << 68 << 69 fContainer_solid(0), << 70 fContainer_logic(0), << 71 fContainer_phys(0), << 72 << 73 fNoFiles(0), << 74 fMateIDs(0), << 75 << 76 fZSliceHeaderMerged(0), << 77 << 78 fNoVoxelsX(0), << 79 fNoVoxelsY(0), << 80 fNoVoxelsZ(0), << 81 fVoxelHalfDimX(0), << 82 fVoxelHalfDimY(0), << 83 fVoxelHalfDimZ(0), << 84 << 85 fConstructed(false) << 86 {} << 87 44 88 //....oooOO0OOooo........oooOO0OOooo........oo << 45 //------------------------------------------------------------- 89 DicomDetectorConstruction::~DicomDetectorConst << 46 DicomDetectorConstruction::~DicomDetectorConstruction() >> 47 { >> 48 } 90 49 91 //....oooOO0OOooo........oooOO0OOooo........oo << 50 //------------------------------------------------------------- 92 G4VPhysicalVolume* DicomDetectorConstruction:: 51 G4VPhysicalVolume* DicomDetectorConstruction::Construct() 93 { 52 { 94 if (!fConstructed || fWorld_phys == 0) { << 53 InitialisationOfMaterials(); 95 fConstructed = true; << 96 InitialisationOfMaterials(); << 97 54 98 //----- Build world << 55 //----- Build world 99 G4double worldXDimension = 1. * m; << 56 G4double worldXDimension = 1.*m; 100 G4double worldYDimension = 1. * m; << 57 G4double worldYDimension = 1.*m; 101 G4double worldZDimension = 1. * m; << 58 G4double worldZDimension = 1.*m; 102 59 103 fWorld_solid = new G4Box("WorldSolid", wor << 60 world_solid = new G4Box( "WorldSolid", >> 61 worldXDimension, >> 62 worldYDimension, >> 63 worldZDimension ); 104 64 105 fWorld_logic = new G4LogicalVolume(fWorld_ << 65 world_logic = new G4LogicalVolume( world_solid, >> 66 air, >> 67 "WorldLogical", >> 68 0, 0, 0 ); 106 69 107 fWorld_phys = new G4PVPlacement(0, G4Three << 70 world_phys = new G4PVPlacement( 0, >> 71 G4ThreeVector(0,0,0), >> 72 "World", >> 73 world_logic, >> 74 0, >> 75 false, >> 76 0 ); 108 77 109 fWorld_logic->SetVisAttributes(G4VisAttrib << 78 ReadPhantomData(); 110 79 111 #ifdef G4_DCMTK << 80 ConstructPhantomContainer(); 112 ReadPhantomDataNew(); << 81 ConstructPhantom(); 113 ConstructPhantomContainerNew(); << 114 #else << 115 ReadPhantomData(); << 116 ConstructPhantomContainer(); << 117 #endif << 118 82 119 ConstructPhantom(); << 83 return world_phys; 120 } << 121 return fWorld_phys; << 122 } 84 } 123 85 124 //....oooOO0OOooo........oooOO0OOooo........oo << 86 >> 87 //------------------------------------------------------------- 125 void DicomDetectorConstruction::Initialisation 88 void DicomDetectorConstruction::InitialisationOfMaterials() 126 { 89 { 127 // Creating elements : 90 // Creating elements : 128 G4double z, a, density; 91 G4double z, a, density; 129 G4String name, symbol; 92 G4String name, symbol; 130 93 131 G4Element* elC = new G4Element(name = "Carbo << 94 G4Element* elC = new G4Element( name = "Carbon", 132 G4Element* elH = new G4Element(name = "Hydro << 95 symbol = "C", 133 G4Element* elN = new G4Element(name = "Nitro << 96 z = 6.0, a = 12.011 * g/mole ); 134 G4Element* elO = new G4Element(name = "Oxyge << 97 G4Element* elH = new G4Element( name = "Hydrogen", 135 G4Element* elNa = << 98 symbol = "H", 136 new G4Element(name = "Sodium", symbol = "N << 99 z = 1.0, a = 1.008 * g/mole ); 137 G4Element* elMg = << 100 G4Element* elN = new G4Element( name = "Nitrogen", 138 new G4Element(name = "Magnesium", symbol = << 101 symbol = "N", 139 G4Element* elP = << 102 z = 7.0, a = 14.007 * g/mole ); 140 new G4Element(name = "Phosphorus", symbol << 103 G4Element* elO = new G4Element( name = "Oxygen", 141 G4Element* elS = new G4Element(name = "Sulfu << 104 symbol = "O", 142 G4Element* elCl = << 105 z = 8.0, a = 16.00 * g/mole ); 143 new G4Element(name = "Chlorine", symbol = << 106 G4Element* elNa = new G4Element( name = "Sodium", 144 G4Element* elK = << 107 symbol = "Na", 145 new G4Element(name = "Potassium", symbol = << 108 z= 11.0, a = 22.98977* g/mole ); 146 << 109 G4Element* elS = new G4Element( name = "Sulfur", 147 G4Element* elFe = new G4Element(name = "Iron << 110 symbol = "S", 148 << 111 z = 16.0,a = 32.065* g/mole ); 149 G4Element* elCa = new G4Element(name = "Calc << 112 G4Element* elCl = new G4Element( name = "Chlorine", 150 << 113 symbol = "P", 151 G4Element* elZn = new G4Element(name = "Zinc << 114 z = 17.0, a = 35.453* g/mole ); >> 115 G4Element* elK = new G4Element( name = "Potassium", >> 116 symbol = "P", >> 117 z = 19.0, a = 30.0983* g/mole ); >> 118 G4Element* elP = new G4Element( name = "Phosphorus", >> 119 symbol = "P", >> 120 z = 30.0, a = 30.973976* g/mole ); >> 121 G4Element* elFe = new G4Element( name = "Iron", >> 122 symbol = "Fe", >> 123 z = 26, a = 56.845* g/mole ); >> 124 G4Element* elMg = new G4Element( name = "Magnesium", >> 125 symbol = "Mg", >> 126 z = 12.0, a = 24.3050* g/mole ); >> 127 G4Element* elCa = new G4Element( name="Calcium", >> 128 symbol = "Ca", >> 129 z = 20.0, a = 40.078* g/mole ); 152 130 153 // Creating Materials : 131 // Creating Materials : 154 G4int numberofElements; 132 G4int numberofElements; 155 133 156 // Air 134 // Air 157 fAir = new G4Material("Air", 1.290 * mg / cm << 135 air = new G4Material( "Air", 158 fAir->AddElement(elN, 0.7); << 136 1.290*mg/cm3, 159 fAir->AddElement(elO, 0.3); << 137 numberofElements = 2 ); 160 << 138 air->AddElement(elN, 0.7); 161 // Soft tissue (ICRP - NIST) << 139 air->AddElement(elO, 0.3); 162 G4Material* softTissue = new G4Material("Sof << 163 softTissue->AddElement(elH, 10.4472 * perCen << 164 softTissue->AddElement(elC, 23.219 * perCent << 165 softTissue->AddElement(elN, 2.488 * perCent) << 166 softTissue->AddElement(elO, 63.0238 * perCen << 167 softTissue->AddElement(elNa, 0.113 * perCent << 168 softTissue->AddElement(elMg, 0.0113 * perCen << 169 softTissue->AddElement(elP, 0.113 * perCent) << 170 softTissue->AddElement(elS, 0.199 * perCent) << 171 softTissue->AddElement(elCl, 0.134 * perCent << 172 softTissue->AddElement(elK, 0.199 * perCent) << 173 softTissue->AddElement(elCa, 0.023 * perCent << 174 softTissue->AddElement(elFe, 0.005 * perCent << 175 softTissue->AddElement(elZn, 0.003 * perCent << 176 140 177 // Lung Inhale 141 // Lung Inhale 178 G4Material* lunginhale = << 142 G4Material* lunginhale = new G4Material( "LungInhale", 179 new G4Material("LungInhale", density = 0.2 << 143 density = 0.217*g/cm3, 180 lunginhale->AddElement(elH, 0.103); << 144 numberofElements = 9); 181 lunginhale->AddElement(elC, 0.105); << 145 lunginhale->AddElement(elH,0.103); 182 lunginhale->AddElement(elN, 0.031); << 146 lunginhale->AddElement(elC,0.105); 183 lunginhale->AddElement(elO, 0.749); << 147 lunginhale->AddElement(elN,0.031); 184 lunginhale->AddElement(elNa, 0.002); << 148 lunginhale->AddElement(elO,0.749); 185 lunginhale->AddElement(elP, 0.002); << 149 lunginhale->AddElement(elNa,0.002); 186 lunginhale->AddElement(elS, 0.003); << 150 lunginhale->AddElement(elP,0.002); 187 lunginhale->AddElement(elCl, 0.002); << 151 lunginhale->AddElement(elS,0.003); 188 lunginhale->AddElement(elK, 0.003); << 152 lunginhale->AddElement(elCl,0.002); >> 153 lunginhale->AddElement(elK,0.003); 189 154 190 // Lung exhale 155 // Lung exhale 191 G4Material* lungexhale = << 156 G4Material* lungexhale = new G4Material( "LungExhale", 192 new G4Material("LungExhale", density = 0.5 << 157 density = 0.508*g/cm3, 193 lungexhale->AddElement(elH, 0.103); << 158 numberofElements = 9 ); 194 lungexhale->AddElement(elC, 0.105); << 159 lungexhale->AddElement(elH,0.103); 195 lungexhale->AddElement(elN, 0.031); << 160 lungexhale->AddElement(elC,0.105); 196 lungexhale->AddElement(elO, 0.749); << 161 lungexhale->AddElement(elN,0.031); 197 lungexhale->AddElement(elNa, 0.002); << 162 lungexhale->AddElement(elO,0.749); 198 lungexhale->AddElement(elP, 0.002); << 163 lungexhale->AddElement(elNa,0.002); 199 lungexhale->AddElement(elS, 0.003); << 164 lungexhale->AddElement(elP,0.002); 200 lungexhale->AddElement(elCl, 0.002); << 165 lungexhale->AddElement(elS,0.003); 201 lungexhale->AddElement(elK, 0.003); << 166 lungexhale->AddElement(elCl,0.002); >> 167 lungexhale->AddElement(elK,0.003); 202 168 203 // Adipose tissue 169 // Adipose tissue 204 G4Material* adiposeTissue = << 170 G4Material* adiposeTissue = new G4Material( "AdiposeTissue", 205 new G4Material("AdiposeTissue", density = << 171 density = 0.967*g/cm3, 206 adiposeTissue->AddElement(elH, 0.114); << 172 numberofElements = 7); 207 adiposeTissue->AddElement(elC, 0.598); << 173 adiposeTissue->AddElement(elH,0.114); 208 adiposeTissue->AddElement(elN, 0.007); << 174 adiposeTissue->AddElement(elC,0.598); 209 adiposeTissue->AddElement(elO, 0.278); << 175 adiposeTissue->AddElement(elN,0.007); 210 adiposeTissue->AddElement(elNa, 0.001); << 176 adiposeTissue->AddElement(elO,0.278); 211 adiposeTissue->AddElement(elS, 0.001); << 177 adiposeTissue->AddElement(elNa,0.001); 212 adiposeTissue->AddElement(elCl, 0.001); << 178 adiposeTissue->AddElement(elS,0.001); 213 << 179 adiposeTissue->AddElement(elCl,0.001); 214 // Brain (ICRP - NIST) << 215 G4Material* brainTissue = new G4Material("Br << 216 brainTissue->AddElement(elH, 11.0667 * perCe << 217 brainTissue->AddElement(elC, 12.542 * perCen << 218 brainTissue->AddElement(elN, 1.328 * perCent << 219 brainTissue->AddElement(elO, 73.7723 * perCe << 220 brainTissue->AddElement(elNa, 0.1840 * perCe << 221 brainTissue->AddElement(elMg, 0.015 * perCen << 222 brainTissue->AddElement(elP, 0.356 * perCent << 223 brainTissue->AddElement(elS, 0.177 * perCent << 224 brainTissue->AddElement(elCl, 0.236 * perCen << 225 brainTissue->AddElement(elK, 0.31 * perCent) << 226 brainTissue->AddElement(elCa, 0.009 * perCen << 227 brainTissue->AddElement(elFe, 0.005 * perCen << 228 brainTissue->AddElement(elZn, 0.001 * perCen << 229 180 230 // Breast 181 // Breast 231 G4Material* breast = new G4Material("Breast" << 182 G4Material* breast = new G4Material( "Breast", 232 breast->AddElement(elH, 0.109); << 183 density = 0.990*g/cm3, 233 breast->AddElement(elC, 0.506); << 184 numberofElements = 8 ); 234 breast->AddElement(elN, 0.023); << 185 breast->AddElement(elH,0.109); 235 breast->AddElement(elO, 0.358); << 186 breast->AddElement(elC,0.506); 236 breast->AddElement(elNa, 0.001); << 187 breast->AddElement(elN,0.023); 237 breast->AddElement(elP, 0.001); << 188 breast->AddElement(elO,0.358); 238 breast->AddElement(elS, 0.001); << 189 breast->AddElement(elNa,0.001); 239 breast->AddElement(elCl, 0.001); << 190 breast->AddElement(elP,0.001); 240 << 191 breast->AddElement(elS,0.001); 241 // Spinal Disc << 192 breast->AddElement(elCl,0.001); 242 G4Material* spinalDisc = new G4Material("Spi << 193 243 spinalDisc->AddElement(elH, 9.60 * perCent); << 194 // Water 244 spinalDisc->AddElement(elC, 9.90 * perCent); << 195 G4Material* water = new G4Material( "Water", 245 spinalDisc->AddElement(elN, 2.20 * perCent); << 196 density = 1.0*g/cm3, 246 spinalDisc->AddElement(elO, 74.40 * perCent) << 197 numberofElements = 2 ); 247 spinalDisc->AddElement(elNa, 0.50 * perCent) << 198 water->AddElement(elH,0.112); 248 spinalDisc->AddElement(elP, 2.20 * perCent); << 199 water->AddElement(elO,0.888); 249 spinalDisc->AddElement(elS, 0.90 * perCent); << 250 spinalDisc->AddElement(elCl, 0.30 * perCent) << 251 << 252 // Water << 253 G4Material* water = new G4Material("Water", << 254 water->AddElement(elH, 0.112); << 255 water->AddElement(elO, 0.888); << 256 200 257 // Muscle 201 // Muscle 258 G4Material* muscle = new G4Material("Muscle" << 202 G4Material* muscle = new G4Material( "Muscle", 259 muscle->AddElement(elH, 0.102); << 203 density = 1.061*g/cm3, 260 muscle->AddElement(elC, 0.143); << 204 numberofElements = 9 ); 261 muscle->AddElement(elN, 0.034); << 205 muscle->AddElement(elH,0.102); 262 muscle->AddElement(elO, 0.710); << 206 muscle->AddElement(elC,0.143); 263 muscle->AddElement(elNa, 0.001); << 207 muscle->AddElement(elN,0.034); 264 muscle->AddElement(elP, 0.002); << 208 muscle->AddElement(elO,0.710); 265 muscle->AddElement(elS, 0.003); << 209 muscle->AddElement(elNa,0.001); 266 muscle->AddElement(elCl, 0.001); << 210 muscle->AddElement(elP,0.002); 267 muscle->AddElement(elK, 0.004); << 211 muscle->AddElement(elS,0.003); >> 212 muscle->AddElement(elCl,0.001); >> 213 muscle->AddElement(elK,0.004); 268 214 269 // Liver 215 // Liver 270 G4Material* liver = new G4Material("Liver", << 216 G4Material* liver = new G4Material( "Liver", 271 liver->AddElement(elH, 0.102); << 217 density = 1.071*g/cm3, 272 liver->AddElement(elC, 0.139); << 218 numberofElements = 9); 273 liver->AddElement(elN, 0.030); << 219 liver->AddElement(elH,0.102); 274 liver->AddElement(elO, 0.716); << 220 liver->AddElement(elC,0.139); 275 liver->AddElement(elNa, 0.002); << 221 liver->AddElement(elN,0.030); 276 liver->AddElement(elP, 0.003); << 222 liver->AddElement(elO,0.716); 277 liver->AddElement(elS, 0.003); << 223 liver->AddElement(elNa,0.002); 278 liver->AddElement(elCl, 0.002); << 224 liver->AddElement(elP,0.003); 279 liver->AddElement(elK, 0.003); << 225 liver->AddElement(elS,0.003); 280 << 226 liver->AddElement(elCl,0.002); 281 // Tooth Dentin << 227 liver->AddElement(elK,0.003); 282 G4Material* toothDentin = new G4Material("To << 228 283 toothDentin->AddElement(elH, 2.67 * perCent) << 229 // Trabecular Bone 284 toothDentin->AddElement(elC, 12.77 * perCent << 230 G4Material* trabecularBone = new G4Material( "TrabecularBone", 285 toothDentin->AddElement(elN, 4.27 * perCent) << 231 density = 1.159*g/cm3, 286 toothDentin->AddElement(elO, 40.40 * perCent << 232 numberofElements = 12 ); 287 toothDentin->AddElement(elNa, 0.65 * perCent << 233 trabecularBone->AddElement(elH,0.085); 288 toothDentin->AddElement(elMg, 0.59 * perCent << 234 trabecularBone->AddElement(elC,0.404); 289 toothDentin->AddElement(elP, 11.86 * perCent << 235 trabecularBone->AddElement(elN,0.058); 290 toothDentin->AddElement(elCl, 0.04 * perCent << 236 trabecularBone->AddElement(elO,0.367); 291 toothDentin->AddElement(elCa, 26.74 * perCen << 237 trabecularBone->AddElement(elNa,0.001); 292 toothDentin->AddElement(elZn, 0.01 * perCent << 238 trabecularBone->AddElement(elMg,0.001); 293 << 239 trabecularBone->AddElement(elP,0.034); 294 // Trabecular Bone << 240 trabecularBone->AddElement(elS,0.002); 295 G4Material* trabecularBone = << 241 trabecularBone->AddElement(elCl,0.002); 296 new G4Material("TrabecularBone", density = << 242 trabecularBone->AddElement(elK,0.001); 297 trabecularBone->AddElement(elH, 0.085); << 243 trabecularBone->AddElement(elCa,0.044); 298 trabecularBone->AddElement(elC, 0.404); << 244 trabecularBone->AddElement(elFe,0.001); 299 trabecularBone->AddElement(elN, 0.058); << 245 300 trabecularBone->AddElement(elO, 0.367); << 301 trabecularBone->AddElement(elNa, 0.001); << 302 trabecularBone->AddElement(elMg, 0.001); << 303 trabecularBone->AddElement(elP, 0.034); << 304 trabecularBone->AddElement(elS, 0.002); << 305 trabecularBone->AddElement(elCl, 0.002); << 306 trabecularBone->AddElement(elK, 0.001); << 307 trabecularBone->AddElement(elCa, 0.044); << 308 trabecularBone->AddElement(elFe, 0.001); << 309 << 310 // Trabecular bone used in the DICOM Head << 311 << 312 G4Material* trabecularBone_head = << 313 new G4Material("TrabecularBone_HEAD", 1.18 << 314 trabecularBone_head->AddElement(elH, 8.50 * << 315 trabecularBone_head->AddElement(elC, 40.40 * << 316 trabecularBone_head->AddElement(elN, 2.80 * << 317 trabecularBone_head->AddElement(elO, 36.70 * << 318 trabecularBone_head->AddElement(elNa, 0.10 * << 319 trabecularBone_head->AddElement(elMg, 0.10 * << 320 trabecularBone_head->AddElement(elP, 3.40 * << 321 trabecularBone_head->AddElement(elS, 0.20 * << 322 trabecularBone_head->AddElement(elCl, 0.20 * << 323 trabecularBone_head->AddElement(elK, 0.10 * << 324 trabecularBone_head->AddElement(elCa, 7.40 * << 325 trabecularBone_head->AddElement(elFe, 0.10 * << 326 << 327 // Dense Bone 246 // Dense Bone 328 G4Material* denseBone = << 247 G4Material* denseBone = new G4Material( "DenseBone", 329 new G4Material("DenseBone", density = 1.57 << 248 density = 1.575*g/cm3, 330 denseBone->AddElement(elH, 0.056); << 249 numberofElements = 11 ); 331 denseBone->AddElement(elC, 0.235); << 250 denseBone->AddElement(elH,0.056); 332 denseBone->AddElement(elN, 0.050); << 251 denseBone->AddElement(elC,0.235); 333 denseBone->AddElement(elO, 0.434); << 252 denseBone->AddElement(elN,0.050); 334 denseBone->AddElement(elNa, 0.001); << 253 denseBone->AddElement(elO,0.434); 335 denseBone->AddElement(elMg, 0.001); << 254 denseBone->AddElement(elNa,0.001); 336 denseBone->AddElement(elP, 0.072); << 255 denseBone->AddElement(elMg,0.001); 337 denseBone->AddElement(elS, 0.003); << 256 denseBone->AddElement(elP,0.072); 338 denseBone->AddElement(elCl, 0.001); << 257 denseBone->AddElement(elS,0.003); 339 denseBone->AddElement(elK, 0.001); << 258 denseBone->AddElement(elCl,0.001); 340 denseBone->AddElement(elCa, 0.146); << 259 denseBone->AddElement(elK,0.001); 341 << 260 denseBone->AddElement(elCa,0.146); 342 // Cortical Bone (ICRP - NIST) << 261 343 G4Material* corticalBone = new G4Material("C << 262 //----- Put the materials in a vector 344 corticalBone->AddElement(elH, 4.7234 * perCe << 263 fOriginalMaterials.push_back(air); // rho = 0.00129 345 corticalBone->AddElement(elC, 14.4330 * perC << 264 fOriginalMaterials.push_back(lunginhale); // rho = 0.217 346 corticalBone->AddElement(elN, 4.199 * perCen << 265 fOriginalMaterials.push_back(lungexhale); // rho = 0.508 347 corticalBone->AddElement(elO, 44.6096 * perC << 266 fOriginalMaterials.push_back(adiposeTissue); // rho = 0.967 348 corticalBone->AddElement(elMg, 0.22 * perCen << 267 fOriginalMaterials.push_back(breast ); // rho = 0.990 349 corticalBone->AddElement(elP, 10.497 * perCe << 268 fOriginalMaterials.push_back(water); // rho = 1.018 350 corticalBone->AddElement(elS, 0.315 * perCen << 269 fOriginalMaterials.push_back(muscle); // rho = 1.061 351 corticalBone->AddElement(elCa, 20.993 * perC << 270 fOriginalMaterials.push_back(liver); // rho = 1.071 352 corticalBone->AddElement(elZn, 0.01 * perCen << 271 fOriginalMaterials.push_back(trabecularBone); // rho = 1.159 353 << 272 fOriginalMaterials.push_back(denseBone); // rho = 1.575 354 // Tooth enamel << 355 G4Material* toothEnamel = new G4Material("To << 356 toothEnamel->AddElement(elH, 0.95 * perCent) << 357 toothEnamel->AddElement(elC, 1.11 * perCent) << 358 toothEnamel->AddElement(elN, 0.23 * perCent) << 359 toothEnamel->AddElement(elO, 41.66 * perCent << 360 toothEnamel->AddElement(elNa, 0.79 * perCent << 361 toothEnamel->AddElement(elMg, 0.23 * perCent << 362 toothEnamel->AddElement(elP, 18.71 * perCent << 363 toothEnamel->AddElement(elCl, 0.34 * perCent << 364 toothEnamel->AddElement(elCa, 35.97 * perCen << 365 toothEnamel->AddElement(elZn, 0.02 * perCent << 366 << 367 #ifdef DICOM_USE_HEAD << 368 //----- Put the materials in a vector HEAD P << 369 fOriginalMaterials.push_back(fAir); // 0.00 << 370 fOriginalMaterials.push_back(softTissue); / << 371 fOriginalMaterials.push_back(brainTissue); << 372 fOriginalMaterials.push_back(spinalDisc); / << 373 fOriginalMaterials.push_back(trabecularBone_ << 374 fOriginalMaterials.push_back(toothDentin); << 375 fOriginalMaterials.push_back(corticalBone); << 376 fOriginalMaterials.push_back(toothEnamel); << 377 G4cout << "The materials of the DICOM Head h << 378 #else << 379 fOriginalMaterials.push_back(fAir); // rho << 380 fOriginalMaterials.push_back(lunginhale); / << 381 fOriginalMaterials.push_back(lungexhale); / << 382 fOriginalMaterials.push_back(adiposeTissue); << 383 fOriginalMaterials.push_back(breast); // rh << 384 fOriginalMaterials.push_back(water); // rho << 385 fOriginalMaterials.push_back(muscle); // rh << 386 fOriginalMaterials.push_back(liver); // rho << 387 fOriginalMaterials.push_back(trabecularBone) << 388 fOriginalMaterials.push_back(denseBone); // << 389 G4cout << "Default materials of the DICOM Ex << 390 #endif << 391 } << 392 << 393 //....oooOO0OOooo........oooOO0OOooo........oo << 394 void DicomDetectorConstruction::ReadPhantomDat << 395 { << 396 #ifdef G4_DCMTK << 397 G4String fileName = DicomFileMgr::GetInstanc << 398 << 399 std::ifstream fin(fileName); << 400 std::vector<G4String> wl; << 401 G4int nMaterials; << 402 fin >> nMaterials; << 403 G4String mateName; << 404 G4int nmate; << 405 for (G4int ii = 0; ii < nMaterials; ++ii) { << 406 fin >> nmate; << 407 fin >> mateName; << 408 if (mateName[0] == '"' && mateName[mateNam << 409 mateName = mateName.substr(1, mateName.l << 410 } << 411 G4cout << "GmReadPhantomG4Geometry::ReadPh << 412 << " mate " << mateName << G4endl; << 413 if (ii != nmate) << 414 G4Exception("GmReadPhantomG4Geometry::Re << 415 FatalErrorInArgument, << 416 "Material number should be i << 417 << 418 G4Material* mate = 0; << 419 const G4MaterialTable* matTab = G4Material << 420 for (auto matite = matTab->cbegin(); matit << 421 if ((*matite)->GetName() == mateName) { << 422 mate = *matite; << 423 } << 424 } << 425 if (mate == 0) { << 426 mate = G4NistManager::Instance()->FindOr << 427 } << 428 if (!mate) << 429 G4Exception("GmReadPhantomG4Geometry::Re << 430 FatalErrorInArgument, ("Mate << 431 fPhantomMaterialsOriginal[nmate] = mate; << 432 } << 433 << 434 fin >> fNoVoxelsX >> fNoVoxelsY >> fNoVoxels << 435 G4cout << "GmReadPhantomG4Geometry::ReadPhan << 436 << fNoVoxelsY << " " << fNoVoxelsZ << << 437 fin >> fMinX >> fMaxX; << 438 fin >> fMinY >> fMaxY; << 439 fin >> fMinZ >> fMaxZ; << 440 fVoxelHalfDimX = (fMaxX - fMinX) / fNoVoxels << 441 fVoxelHalfDimY = (fMaxY - fMinY) / fNoVoxels << 442 fVoxelHalfDimZ = (fMaxZ - fMinZ) / fNoVoxels << 443 # ifdef G4VERBOSE << 444 G4cout << " Extension in X " << fMinX << " " << 445 << " " << fMaxY << G4endl << " Extens << 446 # endif << 447 << 448 fMateIDs = new size_t[fNoVoxelsX * fNoVoxels << 449 for (G4int iz = 0; iz < fNoVoxelsZ; ++iz) { << 450 for (G4int iy = 0; iy < fNoVoxelsY; ++iy) << 451 for (G4int ix = 0; ix < fNoVoxelsX; ++ix << 452 G4int mateID; << 453 fin >> mateID; << 454 G4int nnew = ix + (iy)*fNoVoxelsX + (i << 455 if (mateID < 0 || mateID >= nMaterials << 456 G4Exception("GmReadPhantomG4Geometry << 457 FatalException, << 458 G4String("It should be b << 459 + G4UIcommand:: << 460 + G4UIcommand:: << 461 .c_str()); << 462 } << 463 fMateIDs[nnew] = mateID; << 464 } << 465 } << 466 } << 467 273 468 ReadVoxelDensities(fin); << 469 << 470 fin.close(); << 471 #endif << 472 } 274 } 473 275 474 //....oooOO0OOooo........oooOO0OOooo........oo << 475 void DicomDetectorConstruction::ReadVoxelDensi << 476 { << 477 G4String stemp; << 478 std::map<G4int, std::pair<G4double, G4double << 479 std::map<G4int, std::pair<G4double, G4double << 480 for (G4int ii = 0; ii < G4int(fPhantomMateri << 481 densiMinMax[ii] = std::pair<G4double, G4do << 482 } << 483 << 484 char* part = std::getenv("DICOM_CHANGE_MATER << 485 G4double densityDiff = -1.; << 486 if (part) densityDiff = G4UIcommand::Convert << 487 << 488 std::map<G4int, G4double> densityDiffs; << 489 for (G4int ii = 0; ii < G4int(fPhantomMateri << 490 densityDiffs[ii] = densityDiff; // curren << 491 } << 492 // densityDiffs[0] = 0.0001; //air << 493 276 494 //--- Calculate the average material density << 277 //------------------------------------------------------------- 495 std::map<std::pair<G4Material*, G4int>, matI << 496 << 497 //---- Read the material densities << 498 G4double dens; << 499 for (G4int iz = 0; iz < fNoVoxelsZ; ++iz) { << 500 for (G4int iy = 0; iy < fNoVoxelsY; ++iy) << 501 for (G4int ix = 0; ix < fNoVoxelsX; ++ix << 502 fin >> dens; << 503 G4int copyNo = ix + (iy)*fNoVoxelsX + << 504 << 505 if (densityDiff != -1.) continue; << 506 << 507 //--- store the minimum and maximum de << 508 mpite = densiMinMax.find(G4int(fMateID << 509 if (dens < (*mpite).second.first) (*mp << 510 if (dens > (*mpite).second.second) (*m << 511 //--- Get material from original list << 512 G4int mateID = G4int(fMateIDs[copyNo]) << 513 std::map<G4int, G4Material*>::const_it << 514 << 515 //--- Check if density is equal to the << 516 if (std::fabs(dens - (*imite).second-> << 517 continue; << 518 << 519 //--- Build material name with fPhanto << 520 G4int densityBin = (G4int(dens / densi << 521 << 522 G4String mateName = (*imite).second->G << 523 //--- Look if it is the first voxel wi << 524 std::pair<G4Material*, G4int> matdens( << 525 << 526 auto mppite = newMateDens.find(matdens << 527 if (mppite != newMateDens.cend()) { << 528 matInfo* mi = (*mppite).second; << 529 mi->fSumdens += dens; << 530 mi->fNvoxels++; << 531 fMateIDs[copyNo] = fPhantomMaterials << 532 } << 533 else { << 534 matInfo* mi = new matInfo; << 535 mi->fSumdens = dens; << 536 mi->fNvoxels = 1; << 537 mi->fId = G4int(newMateDens.size() + << 538 newMateDens[matdens] = mi; << 539 fMateIDs[copyNo] = fPhantomMaterials << 540 } << 541 } << 542 } << 543 } << 544 << 545 if (densityDiff != -1.) { << 546 for (mpite = densiMinMax.begin(); mpite != << 547 #ifdef G4VERBOSE << 548 G4cout << "DicomDetectorConstruction::Re << 549 << " ORIG MATERIALS DENSITY " << << 550 << " MAX " << (*mpite).second.sec << 551 #endif << 552 } << 553 } << 554 << 555 //----- Build the list of phantom materials << 556 //--- Add original materials << 557 for (auto mimite = fPhantomMaterialsOriginal << 558 ++mimite) << 559 { << 560 fMaterials.push_back((*mimite).second); << 561 } << 562 // << 563 //---- Build and add new materials << 564 for (auto mppite = newMateDens.cbegin(); mpp << 565 G4double averdens = (*mppite).second->fSum << 566 G4double saverdens = G4int(1000.001 * aver << 567 #ifndef G4VERBOSE << 568 G4cout << "DicomDetectorConstruction::Read << 569 << saverdens << " -> " << G4int(100 << 570 << " " << G4int(1000 * averdens) / << 571 #endif << 572 << 573 G4String mateName = << 574 ((*mppite).first).first->GetName() + "_" << 575 fMaterials.push_back( << 576 BuildMaterialWithChangingDensity((*mppit << 577 } << 578 } << 579 << 580 //....oooOO0OOooo........oooOO0OOooo........oo << 581 void DicomDetectorConstruction::ReadPhantomDat 278 void DicomDetectorConstruction::ReadPhantomData() 582 { 279 { 583 G4String dataFile = DicomHandler::GetDicomDa << 280 std::ifstream finDF("Data.dat"); 584 std::ifstream finDF(dataFile.c_str()); << 585 G4String fname; 281 G4String fname; 586 << 282 if(finDF.good() != 1 ) { 587 if (finDF.good() != 1) { << 283 G4Exception(" DicomDetectorConstruction::ReadPhantomData", 588 G4String descript = "Problem reading data << 284 "", 589 G4Exception(" DicomDetectorConstruction::R << 285 FatalException, >> 286 "Problem reading data file: Data.dat"); 590 } 287 } 591 288 592 G4int compression; 289 G4int compression; 593 finDF >> compression; // not used here << 290 finDF >> compression; // not used here 594 finDF >> fNoFiles; << 595 291 596 for (G4int i = 0; i < fNoFiles; ++i) { << 292 finDF >> fNoFiles; >> 293 for(G4int i = 0; i < fNoFiles; i++ ) { 597 finDF >> fname; 294 finDF >> fname; 598 << 599 //--- Read one data file 295 //--- Read one data file 600 fname += ".g4dcm"; 296 fname += ".g4dcm"; 601 << 602 ReadPhantomDataFile(fname); 297 ReadPhantomDataFile(fname); 603 } 298 } 604 299 605 //----- Merge data headers << 300 //----- Merge data headers 606 MergeZSliceHeaders(); 301 MergeZSliceHeaders(); >> 302 607 finDF.close(); 303 finDF.close(); >> 304 608 } 305 } 609 306 610 //....oooOO0OOooo........oooOO0OOooo........oo << 307 //------------------------------------------------------------- 611 void DicomDetectorConstruction::ReadPhantomDat 308 void DicomDetectorConstruction::ReadPhantomDataFile(const G4String& fname) 612 { 309 { 613 G4cout << " DicomDetectorConstruction::ReadP << 614 << G4endl; // GDEB << 615 << 616 #ifdef G4VERBOSE 310 #ifdef G4VERBOSE 617 G4cout << " DicomDetectorConstruction::ReadP 311 G4cout << " DicomDetectorConstruction::ReadPhantomDataFile opening file " << fname << G4endl; 618 #endif << 312 #endif 619 << 620 std::ifstream fin(fname.c_str(), std::ios_ba 313 std::ifstream fin(fname.c_str(), std::ios_base::in); 621 if (!fin.is_open()) { << 314 if( !fin.is_open() ) { 622 G4Exception("DicomDetectorConstruction::Re << 315 G4Exception("DicomDetectorConstruction::ReadPhantomDataFile", 623 G4String("File not found " + f << 316 "", >> 317 FatalErrorInArgument, >> 318 G4String("File not found " + fname ).c_str()); 624 } 319 } 625 //----- Define density differences (maximum << 320 //----- Define density differences (maximum density difference to create a new material) 626 // a new material) << 321 char* part = getenv( "DICOM_CHANGE_MATERIAL_DENSITY" ); 627 char* part = std::getenv("DICOM_CHANGE_MATER << 628 G4double densityDiff = -1.; 322 G4double densityDiff = -1.; 629 if (part) densityDiff = G4UIcommand::Convert << 323 if( part ) densityDiff = G4UIcommand::ConvertToDouble(part); 630 if (densityDiff != -1.) { << 324 std::map<G4int,G4double> fDensityDiffs; // to be able to use a different densityDiff for each material 631 for (unsigned int ii = 0; ii < fOriginalMa << 325 if( densityDiff != -1. ) { 632 fDensityDiffs[ii] = densityDiff; // cur << 326 for( unsigned int ii = 0; ii < fOriginalMaterials.size(); ii++ ){ 633 // same difference << 327 fDensityDiffs[ii] = densityDiff; //currently all materials with same difference 634 } << 328 } 635 } << 329 }else { 636 else { << 330 if( fMaterials.size() == 0 ) { // do it only for first slice 637 if (fMaterials.size() == 0) { // do it on << 331 for( unsigned int ii = 0; ii < fOriginalMaterials.size(); ii++ ){ 638 for (unsigned int ii = 0; ii < fOriginal << 332 fMaterials.push_back( fOriginalMaterials[ii] ); 639 fMaterials.push_back(fOriginalMaterial << 640 } 333 } 641 } 334 } 642 } 335 } 643 << 336 644 //----- Read data header 337 //----- Read data header 645 DicomPhantomZSliceHeader* sliceHeader = new << 338 DicomPhantomZSliceHeader* sliceHeader = new DicomPhantomZSliceHeader( fin ); 646 fZSliceHeaders.push_back(sliceHeader); << 339 fZSliceHeaders.push_back( sliceHeader ); 647 << 340 648 //----- Read material indices 341 //----- Read material indices 649 G4int nVoxels = sliceHeader->GetNoVoxels(); 342 G4int nVoxels = sliceHeader->GetNoVoxels(); 650 << 343 651 //--- If first slice, initiliaze fMateIDs 344 //--- If first slice, initiliaze fMateIDs 652 if (fZSliceHeaders.size() == 1) { << 345 if( fZSliceHeaders.size() == 1 ) { 653 // fMateIDs = new unsigned int[fNoFiles*nV << 346 //fMateIDs = new unsigned int[fNoFiles*nVoxels]; 654 fMateIDs = new size_t[fNoFiles * nVoxels]; << 347 fMateIDs = new size_t[fNoFiles*nVoxels]; >> 348 655 } 349 } 656 350 657 unsigned int mateID; 351 unsigned int mateID; 658 // number of voxels from previously read sli << 352 G4int voxelCopyNo = (fZSliceHeaders.size()-1)*nVoxels; // number of voxels from previously read slices 659 G4int voxelCopyNo = G4int((fZSliceHeaders.si << 353 for( G4int ii = 0; ii < nVoxels; ii++, voxelCopyNo++ ){ 660 for (G4int ii = 0; ii < nVoxels; ++ii, voxel << 661 fin >> mateID; 354 fin >> mateID; 662 fMateIDs[voxelCopyNo] = mateID; 355 fMateIDs[voxelCopyNo] = mateID; 663 } 356 } 664 357 665 //----- Read material densities and build ne << 358 //----- Read material densities and build new materials if two voxels have same material but its density is in a different density interval (size of density intervals defined by densityDiff) 666 // same material but its density is in a di << 667 // (size of density intervals defined by den << 668 G4double density; 359 G4double density; 669 // number of voxels from previously read sli << 360 voxelCopyNo = (fZSliceHeaders.size()-1)*nVoxels; // number of voxels from previously read slices 670 voxelCopyNo = G4int((fZSliceHeaders.size() - << 361 for( G4int ii = 0; ii < nVoxels; ii++, voxelCopyNo++ ){ 671 for (G4int ii = 0; ii < nVoxels; ++ii, voxel << 672 fin >> density; 362 fin >> density; 673 363 674 //-- Get material from list of original ma 364 //-- Get material from list of original materials 675 mateID = unsigned(fMateIDs[voxelCopyNo]); << 365 int mateID = fMateIDs[voxelCopyNo]; 676 G4Material* mateOrig = fOriginalMaterials[ << 366 G4Material* mateOrig = fOriginalMaterials[mateID]; 677 367 678 //-- Get density bin: middle point of the << 368 //-- Get density bin: middle point of the bin in which the current density is included 679 // density is included << 680 G4String newMateName = mateOrig->GetName() 369 G4String newMateName = mateOrig->GetName(); 681 G4float densityBin = 0.; << 370 float densityBin = 0.; 682 if (densityDiff != -1.) { << 371 if( densityDiff != -1.) { 683 densityBin = G4float(fDensityDiffs[mateI << 372 densityBin = fDensityDiffs[mateID] * (G4int(density/fDensityDiffs[mateID])+0.5); 684 //-- Build the new material name << 373 //-- Build the new material name 685 newMateName += G4UIcommand::ConvertToStr 374 newMateName += G4UIcommand::ConvertToString(densityBin); 686 } 375 } 687 376 688 //-- Look if a material with this name is << 377 //-- Look if a material with this name is already created (because a previous voxel was already in this density bin) 689 // (because a previous voxel was already << 690 unsigned int im; 378 unsigned int im; 691 for (im = 0; im < fMaterials.size(); ++im) << 379 for( im = 0; im < fMaterials.size(); im++ ){ 692 if (fMaterials[im]->GetName() == newMate << 380 if( fMaterials[im]->GetName() == newMateName ) { 693 break; << 381 break; 694 } 382 } 695 } 383 } 696 //-- If material is already created use in 384 //-- If material is already created use index of this material 697 if (im != fMaterials.size()) { << 385 if( im != fMaterials.size() ) { 698 fMateIDs[voxelCopyNo] = im; 386 fMateIDs[voxelCopyNo] = im; 699 //-- else, create the material << 387 //-- else, create the material 700 } << 388 } else { 701 else { << 389 if( densityDiff != -1.) { 702 if (densityDiff != -1.) { << 390 fMaterials.push_back( BuildMaterialWithChangingDensity( mateOrig, densityBin, newMateName ) ); 703 fMaterials.push_back(BuildMaterialWith << 391 fMateIDs[voxelCopyNo] = fMaterials.size()-1; 704 fMateIDs[voxelCopyNo] = fMaterials.siz << 392 } else { 705 } << 393 G4cerr << " im " << im << " < " << fMaterials.size() << " name " << newMateName << G4endl; 706 else { << 394 G4Exception("DicomDetectorConstruction::ReadPhantomDataFile", 707 G4cerr << " im " << im << " < " << fMa << 395 "", 708 G4Exception("DicomDetectorConstruction << 396 FatalErrorInArgument, 709 "Wrong index in material") << 397 "Wrong index in material"); //it should never reach here 710 } 398 } 711 } 399 } 712 } 400 } >> 401 713 } 402 } 714 403 715 //....oooOO0OOooo........oooOO0OOooo........oo << 404 >> 405 //------------------------------------------------------------- 716 void DicomDetectorConstruction::MergeZSliceHea 406 void DicomDetectorConstruction::MergeZSliceHeaders() 717 { 407 { 718 //----- Images must have the same dimension << 408 //----- Images must have the same dimension ... 719 fZSliceHeaderMerged = new DicomPhantomZSlice << 409 fZSliceHeaderMerged = new DicomPhantomZSliceHeader( *fZSliceHeaders[0] ); 720 for (unsigned int ii = 1; ii < fZSliceHeader << 410 for( unsigned int ii = 1; ii < fZSliceHeaders.size(); ii++ ) { 721 *fZSliceHeaderMerged += *fZSliceHeaders[ii 411 *fZSliceHeaderMerged += *fZSliceHeaders[ii]; 722 } << 412 }; 723 } 413 } 724 414 725 //....oooOO0OOooo........oooOO0OOooo........oo << 415 //------------------------------------------------------------- 726 G4Material* DicomDetectorConstruction::BuildMa << 416 G4Material* DicomDetectorConstruction::BuildMaterialWithChangingDensity( const G4Material* origMate, float density, G4String newMateName ) 727 << 728 << 729 { 417 { 730 //----- Copy original material, but with new 418 //----- Copy original material, but with new density 731 G4int nelem = G4int(origMate->GetNumberOfEle << 419 G4int nelem = origMate->GetNumberOfElements(); 732 G4Material* mate = << 420 G4Material* mate = new G4Material( newMateName, density*g/cm3, nelem, kStateUndefined, STP_Temperature ); 733 new G4Material(newMateName, density * g / << 734 421 735 for (G4int ii = 0; ii < nelem; ++ii) { << 422 for( G4int ii = 0; ii < nelem; ii++ ){ 736 G4double frac = origMate->GetFractionVecto 423 G4double frac = origMate->GetFractionVector()[ii]; 737 G4Element* elem = const_cast<G4Element*>(o 424 G4Element* elem = const_cast<G4Element*>(origMate->GetElement(ii)); 738 mate->AddElement(elem, frac); << 425 mate->AddElement( elem, frac ); 739 } 426 } 740 427 741 return mate; 428 return mate; 742 } 429 } 743 430 744 //....oooOO0OOooo........oooOO0OOooo........oo << 431 //----------------------------------------------------------------------- 745 void DicomDetectorConstruction::ConstructPhant 432 void DicomDetectorConstruction::ConstructPhantomContainer() 746 { 433 { 747 //---- Extract number of voxels and voxel di 434 //---- Extract number of voxels and voxel dimensions 748 fNoVoxelsX = fZSliceHeaderMerged->GetNoVoxel << 435 nVoxelX = fZSliceHeaderMerged->GetNoVoxelX(); 749 fNoVoxelsY = fZSliceHeaderMerged->GetNoVoxel << 436 nVoxelY = fZSliceHeaderMerged->GetNoVoxelY(); 750 fNoVoxelsZ = fZSliceHeaderMerged->GetNoVoxel << 437 nVoxelZ = fZSliceHeaderMerged->GetNoVoxelZ(); 751 << 438 752 fVoxelHalfDimX = fZSliceHeaderMerged->GetVox << 439 voxelHalfDimX = fZSliceHeaderMerged->GetVoxelHalfX(); 753 fVoxelHalfDimY = fZSliceHeaderMerged->GetVox << 440 voxelHalfDimY = fZSliceHeaderMerged->GetVoxelHalfY(); 754 fVoxelHalfDimZ = fZSliceHeaderMerged->GetVox << 441 voxelHalfDimZ = fZSliceHeaderMerged->GetVoxelHalfZ(); 755 #ifdef G4VERBOSE 442 #ifdef G4VERBOSE 756 G4cout << " fNoVoxelsX " << fNoVoxelsX << " << 443 G4cout << " nVoxelX " << nVoxelX << " voxelHalfDimX " << voxelHalfDimX <<G4endl; 757 G4cout << " fNoVoxelsY " << fNoVoxelsY << " << 444 G4cout << " nVoxelY " << nVoxelY << " voxelHalfDimY " << voxelHalfDimY <<G4endl; 758 G4cout << " fNoVoxelsZ " << fNoVoxelsZ << " << 445 G4cout << " nVoxelZ " << nVoxelZ << " voxelHalfDimZ " << voxelHalfDimZ <<G4endl; 759 G4cout << " totalPixels " << fNoVoxelsX * fN << 446 G4cout << " totalPixels " << nVoxelX*nVoxelY*nVoxelZ << G4endl; 760 #endif 447 #endif 761 448 762 //----- Define the volume that contains all 449 //----- Define the volume that contains all the voxels 763 fContainer_solid = new G4Box("phantomContain << 450 container_solid = new G4Box("phantomContainer",nVoxelX*voxelHalfDimX,nVoxelY*voxelHalfDimY,nVoxelZ*voxelHalfDimZ); 764 fNoVoxelsY * fV << 451 container_logic = 765 fContainer_logic = << 452 new G4LogicalVolume( container_solid, 766 new G4LogicalVolume(fContainer_solid, << 453 fMaterials[0], //the material is not important, it will be fully filled by the voxels 767 // the material is not << 454 "phantomContainer", 768 fMaterials[0], "phanto << 455 0, 0, 0 ); 769 //--- Place it on the world 456 //--- Place it on the world 770 G4double fOffsetX = (fZSliceHeaderMerged->Ge << 457 G4double offsetX = (fZSliceHeaderMerged->GetMaxX() + fZSliceHeaderMerged->GetMinX() ) /2.; 771 G4double fOffsetY = (fZSliceHeaderMerged->Ge << 458 G4double offsetY = (fZSliceHeaderMerged->GetMaxY() + fZSliceHeaderMerged->GetMinY() ) /2.; 772 G4double fOffsetZ = (fZSliceHeaderMerged->Ge << 459 G4double offsetZ = (fZSliceHeaderMerged->GetMaxZ() + fZSliceHeaderMerged->GetMinZ() ) /2.; 773 G4ThreeVector posCentreVoxels(fOffsetX, fOff << 460 G4ThreeVector posCentreVoxels(offsetX,offsetY,offsetZ); 774 #ifdef G4VERBOSE 461 #ifdef G4VERBOSE 775 G4cout << " placing voxel container volume a 462 G4cout << " placing voxel container volume at " << posCentreVoxels << G4endl; 776 #endif 463 #endif 777 fContainer_phys = new G4PVPlacement(0, // r << 464 container_phys = 778 posCentr << 465 new G4PVPlacement(0, // rotation 779 fContain << 466 posCentreVoxels, 780 "phantom << 467 container_logic, // The logic volume 781 fWorld_l << 468 "phantomContainer", // Name 782 false, << 469 world_logic, // Mother 783 1); // << 470 false, // No op. bool. 784 } << 471 1); // Copy number 785 << 786 //....oooOO0OOooo........oooOO0OOooo........oo << 787 void DicomDetectorConstruction::ConstructPhant << 788 { << 789 #ifdef G4_DCMTK << 790 //---- Extract number of voxels and voxel di << 791 # ifdef G4VERBOSE << 792 G4cout << " fNoVoxelsX " << fNoVoxelsX << " << 793 G4cout << " fNoVoxelsY " << fNoVoxelsY << " << 794 G4cout << " fNoVoxelsZ " << fNoVoxelsZ << " << 795 G4cout << " totalPixels " << fNoVoxelsX * fN << 796 # endif << 797 << 798 //----- Define the volume that contains all << 799 fContainer_solid = new G4Box("phantomContain << 800 fNoVoxelsY * fV << 801 fContainer_logic = << 802 new G4LogicalVolume(fContainer_solid, << 803 // the material is not << 804 fMaterials[0], "phanto << 805 472 806 G4ThreeVector posCentreVoxels((fMinX + fMaxX << 807 # ifdef G4VERBOSE << 808 G4cout << " placing voxel container volume a << 809 # endif << 810 fContainer_phys = new G4PVPlacement(0, // r << 811 posCentr << 812 fContain << 813 "phantom << 814 fWorld_l << 815 false, << 816 1); // << 817 #endif << 818 } 473 } 819 474 >> 475 >> 476 #include "G4SDManager.hh" 820 #include "G4MultiFunctionalDetector.hh" 477 #include "G4MultiFunctionalDetector.hh" 821 #include "G4PSDoseDeposit.hh" 478 #include "G4PSDoseDeposit.hh" 822 #include "G4PSDoseDeposit3D.hh" << 823 #include "G4SDManager.hh" << 824 479 825 //....oooOO0OOooo........oooOO0OOooo........oo << 480 //------------------------------------------------------------- 826 void DicomDetectorConstruction::SetScorer(G4Lo 481 void DicomDetectorConstruction::SetScorer(G4LogicalVolume* voxel_logic) 827 { 482 { 828 #ifdef G4VERBOSE << 829 G4cout << "\t SET SCORER : " << voxel_logic- << 830 #endif << 831 << 832 fScorers.insert(voxel_logic); << 833 } << 834 << 835 //....oooOO0OOooo........oooOO0OOooo........oo << 836 << 837 void DicomDetectorConstruction::ConstructSDand << 838 { << 839 #ifdef G4VERBOSE << 840 G4cout << "\t CONSTRUCT SD AND FIELD" << G4e << 841 #endif << 842 << 843 // G4SDManager* SDman = G4SDManager::GetSDMp << 844 << 845 // SDman->SetVerboseLevel(1); << 846 483 >> 484 G4SDManager* SDman = G4SDManager::GetSDMpointer(); 847 // 485 // 848 // Sensitive Detector Name 486 // Sensitive Detector Name 849 G4String concreteSDname = "phantomSD"; 487 G4String concreteSDname = "phantomSD"; 850 std::vector<G4String> scorer_names; << 488 851 scorer_names.push_back(concreteSDname); << 852 //------------------------ 489 //------------------------ 853 // MultiFunctionalDetector 490 // MultiFunctionalDetector 854 //------------------------ 491 //------------------------ 855 // 492 // 856 // Define MultiFunctionalDetector with name. 493 // Define MultiFunctionalDetector with name. 857 // declare MFDet as a MultiFunctionalDetecto << 858 G4MultiFunctionalDetector* MFDet = new G4Mul 494 G4MultiFunctionalDetector* MFDet = new G4MultiFunctionalDetector(concreteSDname); 859 G4SDManager::GetSDMpointer()->AddNewDetector << 495 SDman->AddNewDetector( MFDet ); // Register SD to SDManager 860 char* nest = std::getenv("DICOM_NESTED_PARAM << 496 861 if (nest && G4String(nest) == "1") { << 497 voxel_logic->SetSensitiveDetector(MFDet); 862 G4VPrimitiveScorer* dosedep = new G4PSDose << 498 863 "DoseDeposit", fNoVoxelsZ, fNoVoxelsY, f << 499 G4PSDoseDeposit* scorer = new G4PSDoseDeposit("DoseDeposit"); 864 // - the last 3 arguments correspond to th << 500 MFDet->RegisterPrimitive(scorer); 865 MFDet->RegisterPrimitive(dosedep); << 866 } << 867 else { << 868 G4VPrimitiveScorer* dosedep = new G4PSDose << 869 MFDet->RegisterPrimitive(dosedep); << 870 } << 871 501 872 for (auto ite = fScorers.cbegin(); ite != fS << 873 SetSensitiveDetector(*ite, MFDet); << 874 } << 875 } 502 } >> 503 876 504