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Please see the license in the file LICENSE and URL above * 16 // * for the full disclaimer and the limitatio 16 // * for the full disclaimer and the limitation of liability. * 17 // * 17 // * * 18 // * This code implementation is the result 18 // * This code implementation is the result of the scientific and * 19 // * technical work of the GEANT4 collaboratio 19 // * technical work of the GEANT4 collaboration. * 20 // * By using, copying, modifying or distri 20 // * By using, copying, modifying or distributing the software (or * 21 // * any work based on the software) you ag 21 // * any work based on the software) you agree to acknowledge its * 22 // * use in resulting scientific publicati 22 // * use in resulting scientific publications, and indicate your * 23 // * acceptance of all terms of the Geant4 Sof 23 // * acceptance of all terms of the Geant4 Software license. * 24 // ******************************************* 24 // ******************************************************************** 25 // 25 // >> 26 // $Id: DicomDetectorConstruction.cc 92820 2015-09-17 15:22:14Z gcosmo $ 26 // 27 // 27 /// \file medical/DICOM/src/DicomDetectorCons 28 /// \file medical/DICOM/src/DicomDetectorConstruction.cc 28 /// \brief Implementation of the DicomDetector 29 /// \brief Implementation of the DicomDetectorConstruction class 29 // 30 // 30 31 31 #include "DicomDetectorConstruction.hh" << 32 #include "globals.hh" 32 << 33 #include "CLHEP/Units/SystemOfUnits.h" << 34 #include "DicomHandler.hh" << 35 #include "DicomPhantomZSliceHeader.hh" << 36 33 37 #include "G4Box.hh" 34 #include "G4Box.hh" 38 #include "G4Element.hh" << 39 #include "G4LogicalVolume.hh" 35 #include "G4LogicalVolume.hh" 40 #include "G4Material.hh" << 36 #include "G4VPhysicalVolume.hh" 41 #include "G4NistManager.hh" << 42 #include "G4PVPlacement.hh" 37 #include "G4PVPlacement.hh" 43 #include "G4PhysicalConstants.hh" << 38 #include "G4Material.hh" >> 39 #include "G4Element.hh" 44 #include "G4UIcommand.hh" 40 #include "G4UIcommand.hh" 45 #include "G4VPhysicalVolume.hh" << 41 #include "G4PhysicalConstants.hh" 46 #include "globals.hh" << 42 #include "G4SystemOfUnits.hh" 47 << 48 #ifdef G4_DCMTK << 49 # include "DicomFileMgr.hh" << 50 #endif << 51 #include "G4VisAttributes.hh" << 52 << 53 using CLHEP::cm3; << 54 using CLHEP::g; << 55 using CLHEP::m; << 56 using CLHEP::mg; << 57 using CLHEP::mole; << 58 using CLHEP::perCent; << 59 43 60 //....oooOO0OOooo........oooOO0OOooo........oo << 44 #include "DicomDetectorConstruction.hh" 61 DicomDetectorConstruction::DicomDetectorConstr << 45 #include "DicomPhantomZSliceHeader.hh" 62 : G4VUserDetectorConstruction(), << 63 fAir(0), << 64 46 65 fWorld_solid(0), << 47 #include "DicomRunAction.hh" 66 fWorld_logic(0), << 48 #include "DicomRun.hh" 67 fWorld_phys(0), << 68 49 69 fContainer_solid(0), << 50 #include "G4VisAttributes.hh" 70 fContainer_logic(0), << 71 fContainer_phys(0), << 72 51 73 fNoFiles(0), << 52 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo...... 74 fMateIDs(0), << 53 DicomDetectorConstruction::DicomDetectorConstruction() >> 54 : G4VUserDetectorConstruction(), >> 55 fAir(0), 75 56 76 fZSliceHeaderMerged(0), << 57 fWorld_solid(0), >> 58 fWorld_logic(0), >> 59 fWorld_phys(0), >> 60 >> 61 fContainer_solid(0), >> 62 fContainer_logic(0), >> 63 fContainer_phys(0), >> 64 >> 65 fNoFiles(0), >> 66 fMateIDs(0), >> 67 >> 68 fZSliceHeaderMerged(0), >> 69 >> 70 fNVoxelX(0), >> 71 fNVoxelY(0), >> 72 fNVoxelZ(0), >> 73 fVoxelHalfDimX(0), >> 74 fVoxelHalfDimY(0), >> 75 fVoxelHalfDimZ(0), 77 76 78 fNoVoxelsX(0), << 77 fConstructed(false) 79 fNoVoxelsY(0), << 78 { 80 fNoVoxelsZ(0), << 81 fVoxelHalfDimX(0), << 82 fVoxelHalfDimY(0), << 83 fVoxelHalfDimZ(0), << 84 79 85 fConstructed(false) << 80 } 86 {} << 87 81 88 //....oooOO0OOooo........oooOO0OOooo........oo << 82 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo...... 89 DicomDetectorConstruction::~DicomDetectorConst << 83 DicomDetectorConstruction::~DicomDetectorConstruction() >> 84 { >> 85 } 90 86 91 //....oooOO0OOooo........oooOO0OOooo........oo << 87 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo...... 92 G4VPhysicalVolume* DicomDetectorConstruction:: 88 G4VPhysicalVolume* DicomDetectorConstruction::Construct() 93 { 89 { 94 if (!fConstructed || fWorld_phys == 0) { << 90 if(!fConstructed || fWorld_phys == 0) { 95 fConstructed = true; 91 fConstructed = true; 96 InitialisationOfMaterials(); 92 InitialisationOfMaterials(); 97 93 98 //----- Build world 94 //----- Build world 99 G4double worldXDimension = 1. * m; << 95 G4double worldXDimension = 1.*m; 100 G4double worldYDimension = 1. * m; << 96 G4double worldYDimension = 1.*m; 101 G4double worldZDimension = 1. * m; << 97 G4double worldZDimension = 1.*m; 102 << 98 103 fWorld_solid = new G4Box("WorldSolid", wor << 99 fWorld_solid = new G4Box( "WorldSolid", 104 << 100 worldXDimension, 105 fWorld_logic = new G4LogicalVolume(fWorld_ << 101 worldYDimension, 106 << 102 worldZDimension ); 107 fWorld_phys = new G4PVPlacement(0, G4Three << 103 108 << 104 fWorld_logic = new G4LogicalVolume( fWorld_solid, 109 fWorld_logic->SetVisAttributes(G4VisAttrib << 105 fAir, >> 106 "WorldLogical", >> 107 0, 0, 0 ); >> 108 >> 109 fWorld_phys = new G4PVPlacement( 0, >> 110 G4ThreeVector(0,0,0), >> 111 "World", >> 112 fWorld_logic, >> 113 0, >> 114 false, >> 115 0 ); 110 116 111 #ifdef G4_DCMTK << 112 ReadPhantomDataNew(); << 113 ConstructPhantomContainerNew(); << 114 #else << 115 ReadPhantomData(); 117 ReadPhantomData(); 116 ConstructPhantomContainer(); << 117 #endif << 118 118 >> 119 ConstructPhantomContainer(); 119 ConstructPhantom(); 120 ConstructPhantom(); 120 } 121 } 121 return fWorld_phys; << 122 return fWorld_phys; 122 } 123 } 123 124 124 //....oooOO0OOooo........oooOO0OOooo........oo << 125 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo...... 125 void DicomDetectorConstruction::Initialisation 126 void DicomDetectorConstruction::InitialisationOfMaterials() 126 { 127 { 127 // Creating elements : << 128 // Creating elements : 128 G4double z, a, density; << 129 G4double z, a, density; 129 G4String name, symbol; << 130 G4String name, symbol; 130 << 131 131 G4Element* elC = new G4Element(name = "Carbo << 132 G4Element* elC = new G4Element( name = "Carbon", 132 G4Element* elH = new G4Element(name = "Hydro << 133 symbol = "C", 133 G4Element* elN = new G4Element(name = "Nitro << 134 z = 6.0, a = 12.011 * g/mole ); 134 G4Element* elO = new G4Element(name = "Oxyge << 135 G4Element* elH = new G4Element( name = "Hydrogen", 135 G4Element* elNa = << 136 symbol = "H", 136 new G4Element(name = "Sodium", symbol = "N << 137 z = 1.0, a = 1.008 * g/mole ); 137 G4Element* elMg = << 138 G4Element* elN = new G4Element( name = "Nitrogen", 138 new G4Element(name = "Magnesium", symbol = << 139 symbol = "N", 139 G4Element* elP = << 140 z = 7.0, a = 14.007 * g/mole ); 140 new G4Element(name = "Phosphorus", symbol << 141 G4Element* elO = new G4Element( name = "Oxygen", 141 G4Element* elS = new G4Element(name = "Sulfu << 142 symbol = "O", 142 G4Element* elCl = << 143 z = 8.0, a = 16.00 * g/mole ); 143 new G4Element(name = "Chlorine", symbol = << 144 G4Element* elNa = new G4Element( name = "Sodium", 144 G4Element* elK = << 145 symbol = "Na", 145 new G4Element(name = "Potassium", symbol = << 146 z= 11.0, a = 22.98977* g/mole ); 146 << 147 G4Element* elS = new G4Element( name = "Sulfur", 147 G4Element* elFe = new G4Element(name = "Iron << 148 symbol = "S", 148 << 149 z = 16.0,a = 32.065* g/mole ); 149 G4Element* elCa = new G4Element(name = "Calc << 150 G4Element* elCl = new G4Element( name = "Chlorine", 150 << 151 symbol = "P", 151 G4Element* elZn = new G4Element(name = "Zinc << 152 z = 17.0, a = 35.453* g/mole ); 152 << 153 G4Element* elK = new G4Element( name = "Potassium", 153 // Creating Materials : << 154 symbol = "P", 154 G4int numberofElements; << 155 z = 19.0, a = 30.0983* g/mole ); 155 << 156 G4Element* elP = new G4Element( name = "Phosphorus", 156 // Air << 157 symbol = "P", 157 fAir = new G4Material("Air", 1.290 * mg / cm << 158 z = 30.0, a = 30.973976* g/mole ); 158 fAir->AddElement(elN, 0.7); << 159 G4Element* elFe = new G4Element( name = "Iron", 159 fAir->AddElement(elO, 0.3); << 160 symbol = "Fe", 160 << 161 z = 26, a = 56.845* g/mole ); 161 // Soft tissue (ICRP - NIST) << 162 G4Element* elMg = new G4Element( name = "Magnesium", 162 G4Material* softTissue = new G4Material("Sof << 163 symbol = "Mg", 163 softTissue->AddElement(elH, 10.4472 * perCen << 164 z = 12.0, a = 24.3050* g/mole ); 164 softTissue->AddElement(elC, 23.219 * perCent << 165 G4Element* elCa = new G4Element( name="Calcium", 165 softTissue->AddElement(elN, 2.488 * perCent) << 166 symbol = "Ca", 166 softTissue->AddElement(elO, 63.0238 * perCen << 167 z = 20.0, a = 40.078* g/mole ); 167 softTissue->AddElement(elNa, 0.113 * perCent << 168 168 softTissue->AddElement(elMg, 0.0113 * perCen << 169 // Creating Materials : 169 softTissue->AddElement(elP, 0.113 * perCent) << 170 G4int numberofElements; 170 softTissue->AddElement(elS, 0.199 * perCent) << 171 171 softTissue->AddElement(elCl, 0.134 * perCent << 172 // Air 172 softTissue->AddElement(elK, 0.199 * perCent) << 173 fAir = new G4Material( "Air", 173 softTissue->AddElement(elCa, 0.023 * perCent << 174 1.290*mg/cm3, 174 softTissue->AddElement(elFe, 0.005 * perCent << 175 numberofElements = 2 ); 175 softTissue->AddElement(elZn, 0.003 * perCent << 176 fAir->AddElement(elN, 0.7); 176 << 177 fAir->AddElement(elO, 0.3); 177 // Lung Inhale << 178 178 G4Material* lunginhale = << 179 // Lung Inhale 179 new G4Material("LungInhale", density = 0.2 << 180 G4Material* lunginhale = new G4Material( "LungInhale", 180 lunginhale->AddElement(elH, 0.103); << 181 density = 0.217*g/cm3, 181 lunginhale->AddElement(elC, 0.105); << 182 numberofElements = 9); 182 lunginhale->AddElement(elN, 0.031); << 183 lunginhale->AddElement(elH,0.103); 183 lunginhale->AddElement(elO, 0.749); << 184 lunginhale->AddElement(elC,0.105); 184 lunginhale->AddElement(elNa, 0.002); << 185 lunginhale->AddElement(elN,0.031); 185 lunginhale->AddElement(elP, 0.002); << 186 lunginhale->AddElement(elO,0.749); 186 lunginhale->AddElement(elS, 0.003); << 187 lunginhale->AddElement(elNa,0.002); 187 lunginhale->AddElement(elCl, 0.002); << 188 lunginhale->AddElement(elP,0.002); 188 lunginhale->AddElement(elK, 0.003); << 189 lunginhale->AddElement(elS,0.003); 189 << 190 lunginhale->AddElement(elCl,0.002); 190 // Lung exhale << 191 lunginhale->AddElement(elK,0.003); 191 G4Material* lungexhale = << 192 192 new G4Material("LungExhale", density = 0.5 << 193 // Lung exhale 193 lungexhale->AddElement(elH, 0.103); << 194 G4Material* lungexhale = new G4Material( "LungExhale", 194 lungexhale->AddElement(elC, 0.105); << 195 density = 0.508*g/cm3, 195 lungexhale->AddElement(elN, 0.031); << 196 numberofElements = 9 ); 196 lungexhale->AddElement(elO, 0.749); << 197 lungexhale->AddElement(elH,0.103); 197 lungexhale->AddElement(elNa, 0.002); << 198 lungexhale->AddElement(elC,0.105); 198 lungexhale->AddElement(elP, 0.002); << 199 lungexhale->AddElement(elN,0.031); 199 lungexhale->AddElement(elS, 0.003); << 200 lungexhale->AddElement(elO,0.749); 200 lungexhale->AddElement(elCl, 0.002); << 201 lungexhale->AddElement(elNa,0.002); 201 lungexhale->AddElement(elK, 0.003); << 202 lungexhale->AddElement(elP,0.002); 202 << 203 lungexhale->AddElement(elS,0.003); 203 // Adipose tissue << 204 lungexhale->AddElement(elCl,0.002); 204 G4Material* adiposeTissue = << 205 lungexhale->AddElement(elK,0.003); 205 new G4Material("AdiposeTissue", density = << 206 206 adiposeTissue->AddElement(elH, 0.114); << 207 // Adipose tissue 207 adiposeTissue->AddElement(elC, 0.598); << 208 G4Material* adiposeTissue = new G4Material( "AdiposeTissue", 208 adiposeTissue->AddElement(elN, 0.007); << 209 density = 0.967*g/cm3, 209 adiposeTissue->AddElement(elO, 0.278); << 210 numberofElements = 7); 210 adiposeTissue->AddElement(elNa, 0.001); << 211 adiposeTissue->AddElement(elH,0.114); 211 adiposeTissue->AddElement(elS, 0.001); << 212 adiposeTissue->AddElement(elC,0.598); 212 adiposeTissue->AddElement(elCl, 0.001); << 213 adiposeTissue->AddElement(elN,0.007); 213 << 214 adiposeTissue->AddElement(elO,0.278); 214 // Brain (ICRP - NIST) << 215 adiposeTissue->AddElement(elNa,0.001); 215 G4Material* brainTissue = new G4Material("Br << 216 adiposeTissue->AddElement(elS,0.001); 216 brainTissue->AddElement(elH, 11.0667 * perCe << 217 adiposeTissue->AddElement(elCl,0.001); 217 brainTissue->AddElement(elC, 12.542 * perCen << 218 218 brainTissue->AddElement(elN, 1.328 * perCent << 219 // Breast 219 brainTissue->AddElement(elO, 73.7723 * perCe << 220 G4Material* breast = new G4Material( "Breast", 220 brainTissue->AddElement(elNa, 0.1840 * perCe << 221 density = 0.990*g/cm3, 221 brainTissue->AddElement(elMg, 0.015 * perCen << 222 numberofElements = 8 ); 222 brainTissue->AddElement(elP, 0.356 * perCent << 223 breast->AddElement(elH,0.109); 223 brainTissue->AddElement(elS, 0.177 * perCent << 224 breast->AddElement(elC,0.506); 224 brainTissue->AddElement(elCl, 0.236 * perCen << 225 breast->AddElement(elN,0.023); 225 brainTissue->AddElement(elK, 0.31 * perCent) << 226 breast->AddElement(elO,0.358); 226 brainTissue->AddElement(elCa, 0.009 * perCen << 227 breast->AddElement(elNa,0.001); 227 brainTissue->AddElement(elFe, 0.005 * perCen << 228 breast->AddElement(elP,0.001); 228 brainTissue->AddElement(elZn, 0.001 * perCen << 229 breast->AddElement(elS,0.001); 229 << 230 breast->AddElement(elCl,0.001); 230 // Breast << 231 231 G4Material* breast = new G4Material("Breast" << 232 // Water 232 breast->AddElement(elH, 0.109); << 233 G4Material* water = new G4Material( "Water", 233 breast->AddElement(elC, 0.506); << 234 density = 1.0*g/cm3, 234 breast->AddElement(elN, 0.023); << 235 numberofElements = 2 ); 235 breast->AddElement(elO, 0.358); << 236 water->AddElement(elH,0.112); 236 breast->AddElement(elNa, 0.001); << 237 water->AddElement(elO,0.888); 237 breast->AddElement(elP, 0.001); << 238 238 breast->AddElement(elS, 0.001); << 239 // Muscle 239 breast->AddElement(elCl, 0.001); << 240 G4Material* muscle = new G4Material( "Muscle", 240 << 241 density = 1.061*g/cm3, 241 // Spinal Disc << 242 numberofElements = 9 ); 242 G4Material* spinalDisc = new G4Material("Spi << 243 muscle->AddElement(elH,0.102); 243 spinalDisc->AddElement(elH, 9.60 * perCent); << 244 muscle->AddElement(elC,0.143); 244 spinalDisc->AddElement(elC, 9.90 * perCent); << 245 muscle->AddElement(elN,0.034); 245 spinalDisc->AddElement(elN, 2.20 * perCent); << 246 muscle->AddElement(elO,0.710); 246 spinalDisc->AddElement(elO, 74.40 * perCent) << 247 muscle->AddElement(elNa,0.001); 247 spinalDisc->AddElement(elNa, 0.50 * perCent) << 248 muscle->AddElement(elP,0.002); 248 spinalDisc->AddElement(elP, 2.20 * perCent); << 249 muscle->AddElement(elS,0.003); 249 spinalDisc->AddElement(elS, 0.90 * perCent); << 250 muscle->AddElement(elCl,0.001); 250 spinalDisc->AddElement(elCl, 0.30 * perCent) << 251 muscle->AddElement(elK,0.004); 251 << 252 252 // Water << 253 // Liver 253 G4Material* water = new G4Material("Water", << 254 G4Material* liver = new G4Material( "Liver", 254 water->AddElement(elH, 0.112); << 255 density = 1.071*g/cm3, 255 water->AddElement(elO, 0.888); << 256 numberofElements = 9); 256 << 257 liver->AddElement(elH,0.102); 257 // Muscle << 258 liver->AddElement(elC,0.139); 258 G4Material* muscle = new G4Material("Muscle" << 259 liver->AddElement(elN,0.030); 259 muscle->AddElement(elH, 0.102); << 260 liver->AddElement(elO,0.716); 260 muscle->AddElement(elC, 0.143); << 261 liver->AddElement(elNa,0.002); 261 muscle->AddElement(elN, 0.034); << 262 liver->AddElement(elP,0.003); 262 muscle->AddElement(elO, 0.710); << 263 liver->AddElement(elS,0.003); 263 muscle->AddElement(elNa, 0.001); << 264 liver->AddElement(elCl,0.002); 264 muscle->AddElement(elP, 0.002); << 265 liver->AddElement(elK,0.003); 265 muscle->AddElement(elS, 0.003); << 266 266 muscle->AddElement(elCl, 0.001); << 267 // Trabecular Bone 267 muscle->AddElement(elK, 0.004); << 268 G4Material* trabecularBone = new G4Material( "TrabecularBone", 268 << 269 density = 1.159*g/cm3, 269 // Liver << 270 numberofElements = 12 ); 270 G4Material* liver = new G4Material("Liver", << 271 trabecularBone->AddElement(elH,0.085); 271 liver->AddElement(elH, 0.102); << 272 trabecularBone->AddElement(elC,0.404); 272 liver->AddElement(elC, 0.139); << 273 trabecularBone->AddElement(elN,0.058); 273 liver->AddElement(elN, 0.030); << 274 trabecularBone->AddElement(elO,0.367); 274 liver->AddElement(elO, 0.716); << 275 trabecularBone->AddElement(elNa,0.001); 275 liver->AddElement(elNa, 0.002); << 276 trabecularBone->AddElement(elMg,0.001); 276 liver->AddElement(elP, 0.003); << 277 trabecularBone->AddElement(elP,0.034); 277 liver->AddElement(elS, 0.003); << 278 trabecularBone->AddElement(elS,0.002); 278 liver->AddElement(elCl, 0.002); << 279 trabecularBone->AddElement(elCl,0.002); 279 liver->AddElement(elK, 0.003); << 280 trabecularBone->AddElement(elK,0.001); 280 << 281 trabecularBone->AddElement(elCa,0.044); 281 // Tooth Dentin << 282 trabecularBone->AddElement(elFe,0.001); 282 G4Material* toothDentin = new G4Material("To << 283 283 toothDentin->AddElement(elH, 2.67 * perCent) << 284 // Dense Bone 284 toothDentin->AddElement(elC, 12.77 * perCent << 285 G4Material* denseBone = new G4Material( "DenseBone", 285 toothDentin->AddElement(elN, 4.27 * perCent) << 286 density = 1.575*g/cm3, 286 toothDentin->AddElement(elO, 40.40 * perCent << 287 numberofElements = 11 ); 287 toothDentin->AddElement(elNa, 0.65 * perCent << 288 denseBone->AddElement(elH,0.056); 288 toothDentin->AddElement(elMg, 0.59 * perCent << 289 denseBone->AddElement(elC,0.235); 289 toothDentin->AddElement(elP, 11.86 * perCent << 290 denseBone->AddElement(elN,0.050); 290 toothDentin->AddElement(elCl, 0.04 * perCent << 291 denseBone->AddElement(elO,0.434); 291 toothDentin->AddElement(elCa, 26.74 * perCen << 292 denseBone->AddElement(elNa,0.001); 292 toothDentin->AddElement(elZn, 0.01 * perCent << 293 denseBone->AddElement(elMg,0.001); 293 << 294 denseBone->AddElement(elP,0.072); 294 // Trabecular Bone << 295 denseBone->AddElement(elS,0.003); 295 G4Material* trabecularBone = << 296 denseBone->AddElement(elCl,0.001); 296 new G4Material("TrabecularBone", density = << 297 denseBone->AddElement(elK,0.001); 297 trabecularBone->AddElement(elH, 0.085); << 298 denseBone->AddElement(elCa,0.146); 298 trabecularBone->AddElement(elC, 0.404); << 299 299 trabecularBone->AddElement(elN, 0.058); << 300 //----- Put the materials in a vector 300 trabecularBone->AddElement(elO, 0.367); << 301 fOriginalMaterials.push_back(fAir); // rho = 0.00129 301 trabecularBone->AddElement(elNa, 0.001); << 302 fOriginalMaterials.push_back(lunginhale); // rho = 0.217 302 trabecularBone->AddElement(elMg, 0.001); << 303 fOriginalMaterials.push_back(lungexhale); // rho = 0.508 303 trabecularBone->AddElement(elP, 0.034); << 304 fOriginalMaterials.push_back(adiposeTissue); // rho = 0.967 304 trabecularBone->AddElement(elS, 0.002); << 305 fOriginalMaterials.push_back(breast ); // rho = 0.990 305 trabecularBone->AddElement(elCl, 0.002); << 306 fOriginalMaterials.push_back(water); // rho = 1.018 306 trabecularBone->AddElement(elK, 0.001); << 307 fOriginalMaterials.push_back(muscle); // rho = 1.061 307 trabecularBone->AddElement(elCa, 0.044); << 308 fOriginalMaterials.push_back(liver); // rho = 1.071 308 trabecularBone->AddElement(elFe, 0.001); << 309 fOriginalMaterials.push_back(trabecularBone); // rho = 1.159 309 << 310 fOriginalMaterials.push_back(denseBone); // rho = 1.575 310 // Trabecular bone used in the DICOM Head << 311 << 312 G4Material* trabecularBone_head = << 313 new G4Material("TrabecularBone_HEAD", 1.18 << 314 trabecularBone_head->AddElement(elH, 8.50 * << 315 trabecularBone_head->AddElement(elC, 40.40 * << 316 trabecularBone_head->AddElement(elN, 2.80 * << 317 trabecularBone_head->AddElement(elO, 36.70 * << 318 trabecularBone_head->AddElement(elNa, 0.10 * << 319 trabecularBone_head->AddElement(elMg, 0.10 * << 320 trabecularBone_head->AddElement(elP, 3.40 * << 321 trabecularBone_head->AddElement(elS, 0.20 * << 322 trabecularBone_head->AddElement(elCl, 0.20 * << 323 trabecularBone_head->AddElement(elK, 0.10 * << 324 trabecularBone_head->AddElement(elCa, 7.40 * << 325 trabecularBone_head->AddElement(elFe, 0.10 * << 326 << 327 // Dense Bone << 328 G4Material* denseBone = << 329 new G4Material("DenseBone", density = 1.57 << 330 denseBone->AddElement(elH, 0.056); << 331 denseBone->AddElement(elC, 0.235); << 332 denseBone->AddElement(elN, 0.050); << 333 denseBone->AddElement(elO, 0.434); << 334 denseBone->AddElement(elNa, 0.001); << 335 denseBone->AddElement(elMg, 0.001); << 336 denseBone->AddElement(elP, 0.072); << 337 denseBone->AddElement(elS, 0.003); << 338 denseBone->AddElement(elCl, 0.001); << 339 denseBone->AddElement(elK, 0.001); << 340 denseBone->AddElement(elCa, 0.146); << 341 << 342 // Cortical Bone (ICRP - NIST) << 343 G4Material* corticalBone = new G4Material("C << 344 corticalBone->AddElement(elH, 4.7234 * perCe << 345 corticalBone->AddElement(elC, 14.4330 * perC << 346 corticalBone->AddElement(elN, 4.199 * perCen << 347 corticalBone->AddElement(elO, 44.6096 * perC << 348 corticalBone->AddElement(elMg, 0.22 * perCen << 349 corticalBone->AddElement(elP, 10.497 * perCe << 350 corticalBone->AddElement(elS, 0.315 * perCen << 351 corticalBone->AddElement(elCa, 20.993 * perC << 352 corticalBone->AddElement(elZn, 0.01 * perCen << 353 << 354 // Tooth enamel << 355 G4Material* toothEnamel = new G4Material("To << 356 toothEnamel->AddElement(elH, 0.95 * perCent) << 357 toothEnamel->AddElement(elC, 1.11 * perCent) << 358 toothEnamel->AddElement(elN, 0.23 * perCent) << 359 toothEnamel->AddElement(elO, 41.66 * perCent << 360 toothEnamel->AddElement(elNa, 0.79 * perCent << 361 toothEnamel->AddElement(elMg, 0.23 * perCent << 362 toothEnamel->AddElement(elP, 18.71 * perCent << 363 toothEnamel->AddElement(elCl, 0.34 * perCent << 364 toothEnamel->AddElement(elCa, 35.97 * perCen << 365 toothEnamel->AddElement(elZn, 0.02 * perCent << 366 << 367 #ifdef DICOM_USE_HEAD << 368 //----- Put the materials in a vector HEAD P << 369 fOriginalMaterials.push_back(fAir); // 0.00 << 370 fOriginalMaterials.push_back(softTissue); / << 371 fOriginalMaterials.push_back(brainTissue); << 372 fOriginalMaterials.push_back(spinalDisc); / << 373 fOriginalMaterials.push_back(trabecularBone_ << 374 fOriginalMaterials.push_back(toothDentin); << 375 fOriginalMaterials.push_back(corticalBone); << 376 fOriginalMaterials.push_back(toothEnamel); << 377 G4cout << "The materials of the DICOM Head h << 378 #else << 379 fOriginalMaterials.push_back(fAir); // rho << 380 fOriginalMaterials.push_back(lunginhale); / << 381 fOriginalMaterials.push_back(lungexhale); / << 382 fOriginalMaterials.push_back(adiposeTissue); << 383 fOriginalMaterials.push_back(breast); // rh << 384 fOriginalMaterials.push_back(water); // rho << 385 fOriginalMaterials.push_back(muscle); // rh << 386 fOriginalMaterials.push_back(liver); // rho << 387 fOriginalMaterials.push_back(trabecularBone) << 388 fOriginalMaterials.push_back(denseBone); // << 389 G4cout << "Default materials of the DICOM Ex << 390 #endif << 391 } << 392 << 393 //....oooOO0OOooo........oooOO0OOooo........oo << 394 void DicomDetectorConstruction::ReadPhantomDat << 395 { << 396 #ifdef G4_DCMTK << 397 G4String fileName = DicomFileMgr::GetInstanc << 398 << 399 std::ifstream fin(fileName); << 400 std::vector<G4String> wl; << 401 G4int nMaterials; << 402 fin >> nMaterials; << 403 G4String mateName; << 404 G4int nmate; << 405 for (G4int ii = 0; ii < nMaterials; ++ii) { << 406 fin >> nmate; << 407 fin >> mateName; << 408 if (mateName[0] == '"' && mateName[mateNam << 409 mateName = mateName.substr(1, mateName.l << 410 } << 411 G4cout << "GmReadPhantomG4Geometry::ReadPh << 412 << " mate " << mateName << G4endl; << 413 if (ii != nmate) << 414 G4Exception("GmReadPhantomG4Geometry::Re << 415 FatalErrorInArgument, << 416 "Material number should be i << 417 << 418 G4Material* mate = 0; << 419 const G4MaterialTable* matTab = G4Material << 420 for (auto matite = matTab->cbegin(); matit << 421 if ((*matite)->GetName() == mateName) { << 422 mate = *matite; << 423 } << 424 } << 425 if (mate == 0) { << 426 mate = G4NistManager::Instance()->FindOr << 427 } << 428 if (!mate) << 429 G4Exception("GmReadPhantomG4Geometry::Re << 430 FatalErrorInArgument, ("Mate << 431 fPhantomMaterialsOriginal[nmate] = mate; << 432 } << 433 << 434 fin >> fNoVoxelsX >> fNoVoxelsY >> fNoVoxels << 435 G4cout << "GmReadPhantomG4Geometry::ReadPhan << 436 << fNoVoxelsY << " " << fNoVoxelsZ << << 437 fin >> fMinX >> fMaxX; << 438 fin >> fMinY >> fMaxY; << 439 fin >> fMinZ >> fMaxZ; << 440 fVoxelHalfDimX = (fMaxX - fMinX) / fNoVoxels << 441 fVoxelHalfDimY = (fMaxY - fMinY) / fNoVoxels << 442 fVoxelHalfDimZ = (fMaxZ - fMinZ) / fNoVoxels << 443 # ifdef G4VERBOSE << 444 G4cout << " Extension in X " << fMinX << " " << 445 << " " << fMaxY << G4endl << " Extens << 446 # endif << 447 << 448 fMateIDs = new size_t[fNoVoxelsX * fNoVoxels << 449 for (G4int iz = 0; iz < fNoVoxelsZ; ++iz) { << 450 for (G4int iy = 0; iy < fNoVoxelsY; ++iy) << 451 for (G4int ix = 0; ix < fNoVoxelsX; ++ix << 452 G4int mateID; << 453 fin >> mateID; << 454 G4int nnew = ix + (iy)*fNoVoxelsX + (i << 455 if (mateID < 0 || mateID >= nMaterials << 456 G4Exception("GmReadPhantomG4Geometry << 457 FatalException, << 458 G4String("It should be b << 459 + G4UIcommand:: << 460 + G4UIcommand:: << 461 .c_str()); << 462 } << 463 fMateIDs[nnew] = mateID; << 464 } << 465 } << 466 } << 467 << 468 ReadVoxelDensities(fin); << 469 << 470 fin.close(); << 471 #endif << 472 } << 473 << 474 //....oooOO0OOooo........oooOO0OOooo........oo << 475 void DicomDetectorConstruction::ReadVoxelDensi << 476 { << 477 G4String stemp; << 478 std::map<G4int, std::pair<G4double, G4double << 479 std::map<G4int, std::pair<G4double, G4double << 480 for (G4int ii = 0; ii < G4int(fPhantomMateri << 481 densiMinMax[ii] = std::pair<G4double, G4do << 482 } << 483 << 484 char* part = std::getenv("DICOM_CHANGE_MATER << 485 G4double densityDiff = -1.; << 486 if (part) densityDiff = G4UIcommand::Convert << 487 << 488 std::map<G4int, G4double> densityDiffs; << 489 for (G4int ii = 0; ii < G4int(fPhantomMateri << 490 densityDiffs[ii] = densityDiff; // curren << 491 } << 492 // densityDiffs[0] = 0.0001; //air << 493 << 494 //--- Calculate the average material density << 495 std::map<std::pair<G4Material*, G4int>, matI << 496 << 497 //---- Read the material densities << 498 G4double dens; << 499 for (G4int iz = 0; iz < fNoVoxelsZ; ++iz) { << 500 for (G4int iy = 0; iy < fNoVoxelsY; ++iy) << 501 for (G4int ix = 0; ix < fNoVoxelsX; ++ix << 502 fin >> dens; << 503 G4int copyNo = ix + (iy)*fNoVoxelsX + << 504 << 505 if (densityDiff != -1.) continue; << 506 << 507 //--- store the minimum and maximum de << 508 mpite = densiMinMax.find(G4int(fMateID << 509 if (dens < (*mpite).second.first) (*mp << 510 if (dens > (*mpite).second.second) (*m << 511 //--- Get material from original list << 512 G4int mateID = G4int(fMateIDs[copyNo]) << 513 std::map<G4int, G4Material*>::const_it << 514 << 515 //--- Check if density is equal to the << 516 if (std::fabs(dens - (*imite).second-> << 517 continue; << 518 << 519 //--- Build material name with fPhanto << 520 G4int densityBin = (G4int(dens / densi << 521 << 522 G4String mateName = (*imite).second->G << 523 //--- Look if it is the first voxel wi << 524 std::pair<G4Material*, G4int> matdens( << 525 << 526 auto mppite = newMateDens.find(matdens << 527 if (mppite != newMateDens.cend()) { << 528 matInfo* mi = (*mppite).second; << 529 mi->fSumdens += dens; << 530 mi->fNvoxels++; << 531 fMateIDs[copyNo] = fPhantomMaterials << 532 } << 533 else { << 534 matInfo* mi = new matInfo; << 535 mi->fSumdens = dens; << 536 mi->fNvoxels = 1; << 537 mi->fId = G4int(newMateDens.size() + << 538 newMateDens[matdens] = mi; << 539 fMateIDs[copyNo] = fPhantomMaterials << 540 } << 541 } << 542 } << 543 } << 544 311 545 if (densityDiff != -1.) { << 546 for (mpite = densiMinMax.begin(); mpite != << 547 #ifdef G4VERBOSE << 548 G4cout << "DicomDetectorConstruction::Re << 549 << " ORIG MATERIALS DENSITY " << << 550 << " MAX " << (*mpite).second.sec << 551 #endif << 552 } << 553 } << 554 << 555 //----- Build the list of phantom materials << 556 //--- Add original materials << 557 for (auto mimite = fPhantomMaterialsOriginal << 558 ++mimite) << 559 { << 560 fMaterials.push_back((*mimite).second); << 561 } << 562 // << 563 //---- Build and add new materials << 564 for (auto mppite = newMateDens.cbegin(); mpp << 565 G4double averdens = (*mppite).second->fSum << 566 G4double saverdens = G4int(1000.001 * aver << 567 #ifndef G4VERBOSE << 568 G4cout << "DicomDetectorConstruction::Read << 569 << saverdens << " -> " << G4int(100 << 570 << " " << G4int(1000 * averdens) / << 571 #endif << 572 << 573 G4String mateName = << 574 ((*mppite).first).first->GetName() + "_" << 575 fMaterials.push_back( << 576 BuildMaterialWithChangingDensity((*mppit << 577 } << 578 } 312 } 579 313 580 //....oooOO0OOooo........oooOO0OOooo........oo << 314 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo...... 581 void DicomDetectorConstruction::ReadPhantomDat 315 void DicomDetectorConstruction::ReadPhantomData() 582 { 316 { 583 G4String dataFile = DicomHandler::GetDicomDa << 584 std::ifstream finDF(dataFile.c_str()); << 585 G4String fname; << 586 << 587 if (finDF.good() != 1) { << 588 G4String descript = "Problem reading data << 589 G4Exception(" DicomDetectorConstruction::R << 590 } << 591 << 592 G4int compression; << 593 finDF >> compression; // not used here << 594 finDF >> fNoFiles; << 595 317 596 for (G4int i = 0; i < fNoFiles; ++i) { << 318 G4String dataFile = "Data.dat"; 597 finDF >> fname; << 319 std::ifstream finDF(dataFile.c_str()); >> 320 G4String fname; >> 321 if(finDF.good() != 1 ) { >> 322 G4String descript = "Problem reading data file: "+dataFile; >> 323 G4Exception(" DicomDetectorConstruction::ReadPhantomData", >> 324 "", >> 325 FatalException, >> 326 descript); >> 327 } >> 328 >> 329 G4int compression; >> 330 finDF >> compression; // not used here >> 331 >> 332 finDF >> fNoFiles; >> 333 for(G4int i = 0; i < fNoFiles; i++ ) { >> 334 finDF >> fname; >> 335 //--- Read one data file >> 336 fname += ".g4dcm"; >> 337 ReadPhantomDataFile(fname); >> 338 } 598 339 599 //--- Read one data file << 340 //----- Merge data headers 600 fname += ".g4dcm"; << 341 MergeZSliceHeaders(); 601 342 602 ReadPhantomDataFile(fname); << 343 finDF.close(); 603 } << 604 344 605 //----- Merge data headers << 606 MergeZSliceHeaders(); << 607 finDF.close(); << 608 } 345 } 609 346 610 //....oooOO0OOooo........oooOO0OOooo........oo << 347 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo...... 611 void DicomDetectorConstruction::ReadPhantomDat 348 void DicomDetectorConstruction::ReadPhantomDataFile(const G4String& fname) 612 { 349 { 613 G4cout << " DicomDetectorConstruction::ReadP << 614 << G4endl; // GDEB << 615 << 616 #ifdef G4VERBOSE 350 #ifdef G4VERBOSE 617 G4cout << " DicomDetectorConstruction::ReadP << 351 G4cout << " DicomDetectorConstruction::ReadPhantomDataFile opening file " >> 352 << fname << G4endl; 618 #endif 353 #endif 619 << 620 std::ifstream fin(fname.c_str(), std::ios_ba 354 std::ifstream fin(fname.c_str(), std::ios_base::in); 621 if (!fin.is_open()) { << 355 if( !fin.is_open() ) { 622 G4Exception("DicomDetectorConstruction::Re << 356 G4Exception("DicomDetectorConstruction::ReadPhantomDataFile", 623 G4String("File not found " + f << 357 "", >> 358 FatalErrorInArgument, >> 359 G4String("File not found " + fname ).c_str()); 624 } 360 } 625 //----- Define density differences (maximum 361 //----- Define density differences (maximum density difference to create 626 // a new material) 362 // a new material) 627 char* part = std::getenv("DICOM_CHANGE_MATER << 363 char* part = getenv( "DICOM_CHANGE_MATERIAL_DENSITY" ); 628 G4double densityDiff = -1.; 364 G4double densityDiff = -1.; 629 if (part) densityDiff = G4UIcommand::Convert << 365 if( part ) densityDiff = G4UIcommand::ConvertToDouble(part); 630 if (densityDiff != -1.) { << 366 if( densityDiff != -1. ) { 631 for (unsigned int ii = 0; ii < fOriginalMa << 367 for( unsigned int ii = 0; ii < fOriginalMaterials.size(); ii++ ){ 632 fDensityDiffs[ii] = densityDiff; // cur << 368 fDensityDiffs[ii] = densityDiff; //currently all materials with 633 // same difference 369 // same difference 634 } 370 } 635 } << 371 }else { 636 else { << 372 if( fMaterials.size() == 0 ) { // do it only for first slice 637 if (fMaterials.size() == 0) { // do it on << 373 for( unsigned int ii = 0; ii < fOriginalMaterials.size(); ii++ ){ 638 for (unsigned int ii = 0; ii < fOriginal << 374 fMaterials.push_back( fOriginalMaterials[ii] ); 639 fMaterials.push_back(fOriginalMaterial << 640 } 375 } 641 } 376 } 642 } 377 } 643 << 378 644 //----- Read data header 379 //----- Read data header 645 DicomPhantomZSliceHeader* sliceHeader = new << 380 DicomPhantomZSliceHeader* sliceHeader = new DicomPhantomZSliceHeader( fin ); 646 fZSliceHeaders.push_back(sliceHeader); << 381 fZSliceHeaders.push_back( sliceHeader ); 647 << 382 648 //----- Read material indices 383 //----- Read material indices 649 G4int nVoxels = sliceHeader->GetNoVoxels(); 384 G4int nVoxels = sliceHeader->GetNoVoxels(); 650 << 385 651 //--- If first slice, initiliaze fMateIDs 386 //--- If first slice, initiliaze fMateIDs 652 if (fZSliceHeaders.size() == 1) { << 387 if( fZSliceHeaders.size() == 1 ) { 653 // fMateIDs = new unsigned int[fNoFiles*nV << 388 //fMateIDs = new unsigned int[fNoFiles*nVoxels]; 654 fMateIDs = new size_t[fNoFiles * nVoxels]; << 389 fMateIDs = new size_t[fNoFiles*nVoxels]; >> 390 655 } 391 } 656 << 392 657 unsigned int mateID; 393 unsigned int mateID; 658 // number of voxels from previously read sli 394 // number of voxels from previously read slices 659 G4int voxelCopyNo = G4int((fZSliceHeaders.si << 395 G4int voxelCopyNo = (fZSliceHeaders.size()-1)*nVoxels; 660 for (G4int ii = 0; ii < nVoxels; ++ii, voxel << 396 for( G4int ii = 0; ii < nVoxels; ii++, voxelCopyNo++ ){ 661 fin >> mateID; 397 fin >> mateID; 662 fMateIDs[voxelCopyNo] = mateID; 398 fMateIDs[voxelCopyNo] = mateID; 663 } 399 } 664 << 400 665 //----- Read material densities and build ne 401 //----- Read material densities and build new materials if two voxels have 666 // same material but its density is in a di << 402 // same material but its density is in a different density interval 667 // (size of density intervals defined by den 403 // (size of density intervals defined by densityDiff) 668 G4double density; 404 G4double density; 669 // number of voxels from previously read sli 405 // number of voxels from previously read slices 670 voxelCopyNo = G4int((fZSliceHeaders.size() - << 406 voxelCopyNo = (fZSliceHeaders.size()-1)*nVoxels; 671 for (G4int ii = 0; ii < nVoxels; ++ii, voxel << 407 for( G4int ii = 0; ii < nVoxels; ii++, voxelCopyNo++ ){ 672 fin >> density; 408 fin >> density; 673 << 409 674 //-- Get material from list of original ma 410 //-- Get material from list of original materials 675 mateID = unsigned(fMateIDs[voxelCopyNo]); << 411 mateID = fMateIDs[voxelCopyNo]; 676 G4Material* mateOrig = fOriginalMaterials[ << 412 G4Material* mateOrig = fOriginalMaterials[mateID]; 677 << 413 678 //-- Get density bin: middle point of the 414 //-- Get density bin: middle point of the bin in which the current 679 // density is included 415 // density is included 680 G4String newMateName = mateOrig->GetName() 416 G4String newMateName = mateOrig->GetName(); 681 G4float densityBin = 0.; << 417 float densityBin = 0.; 682 if (densityDiff != -1.) { << 418 if( densityDiff != -1.) { 683 densityBin = G4float(fDensityDiffs[mateI << 419 densityBin = fDensityDiffs[mateID] * >> 420 (G4int(density/fDensityDiffs[mateID])+0.5); 684 //-- Build the new material name 421 //-- Build the new material name 685 newMateName += G4UIcommand::ConvertToStr 422 newMateName += G4UIcommand::ConvertToString(densityBin); 686 } 423 } 687 << 424 688 //-- Look if a material with this name is 425 //-- Look if a material with this name is already created 689 // (because a previous voxel was already 426 // (because a previous voxel was already in this density bin) 690 unsigned int im; 427 unsigned int im; 691 for (im = 0; im < fMaterials.size(); ++im) << 428 for( im = 0; im < fMaterials.size(); im++ ){ 692 if (fMaterials[im]->GetName() == newMate << 429 if( fMaterials[im]->GetName() == newMateName ) { 693 break; 430 break; 694 } 431 } 695 } 432 } 696 //-- If material is already created use in 433 //-- If material is already created use index of this material 697 if (im != fMaterials.size()) { << 434 if( im != fMaterials.size() ) { 698 fMateIDs[voxelCopyNo] = im; 435 fMateIDs[voxelCopyNo] = im; 699 //-- else, create the material 436 //-- else, create the material 700 } << 437 } else { 701 else { << 438 if( densityDiff != -1.) { 702 if (densityDiff != -1.) { << 439 fMaterials.push_back( BuildMaterialWithChangingDensity( mateOrig, 703 fMaterials.push_back(BuildMaterialWith << 440 densityBin, newMateName ) ); 704 fMateIDs[voxelCopyNo] = fMaterials.siz << 441 fMateIDs[voxelCopyNo] = fMaterials.size()-1; 705 } << 442 } else { 706 else { << 443 G4cerr << " im " << im << " < " << fMaterials.size() << " name " 707 G4cerr << " im " << im << " < " << fMa << 444 << newMateName << G4endl; 708 G4Exception("DicomDetectorConstruction << 445 G4Exception("DicomDetectorConstruction::ReadPhantomDataFile", 709 "Wrong index in material") << 446 "", >> 447 FatalErrorInArgument, >> 448 "Wrong index in material"); //it should never reach here 710 } 449 } 711 } 450 } 712 } 451 } >> 452 713 } 453 } 714 454 715 //....oooOO0OOooo........oooOO0OOooo........oo << 455 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo...... 716 void DicomDetectorConstruction::MergeZSliceHea 456 void DicomDetectorConstruction::MergeZSliceHeaders() 717 { 457 { 718 //----- Images must have the same dimension 458 //----- Images must have the same dimension ... 719 fZSliceHeaderMerged = new DicomPhantomZSlice << 459 fZSliceHeaderMerged = new DicomPhantomZSliceHeader( *fZSliceHeaders[0] ); 720 for (unsigned int ii = 1; ii < fZSliceHeader << 460 for( unsigned int ii = 1; ii < fZSliceHeaders.size(); ii++ ) { 721 *fZSliceHeaderMerged += *fZSliceHeaders[ii 461 *fZSliceHeaderMerged += *fZSliceHeaders[ii]; 722 } << 462 }; >> 463 723 } 464 } 724 465 725 //....oooOO0OOooo........oooOO0OOooo........oo << 466 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo...... 726 G4Material* DicomDetectorConstruction::BuildMa << 467 G4Material* DicomDetectorConstruction::BuildMaterialWithChangingDensity( 727 << 468 const G4Material* origMate, float density, G4String newMateName ) 728 << 729 { 469 { 730 //----- Copy original material, but with new 470 //----- Copy original material, but with new density 731 G4int nelem = G4int(origMate->GetNumberOfEle << 471 G4int nelem = origMate->GetNumberOfElements(); 732 G4Material* mate = << 472 G4Material* mate = new G4Material( newMateName, density*g/cm3, nelem, 733 new G4Material(newMateName, density * g / << 473 kStateUndefined, STP_Temperature ); 734 << 474 735 for (G4int ii = 0; ii < nelem; ++ii) { << 475 for( G4int ii = 0; ii < nelem; ii++ ){ 736 G4double frac = origMate->GetFractionVecto 476 G4double frac = origMate->GetFractionVector()[ii]; 737 G4Element* elem = const_cast<G4Element*>(o 477 G4Element* elem = const_cast<G4Element*>(origMate->GetElement(ii)); 738 mate->AddElement(elem, frac); << 478 mate->AddElement( elem, frac ); 739 } 479 } 740 << 480 741 return mate; 481 return mate; 742 } 482 } 743 483 744 //....oooOO0OOooo........oooOO0OOooo........oo << 484 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo...... 745 void DicomDetectorConstruction::ConstructPhant 485 void DicomDetectorConstruction::ConstructPhantomContainer() 746 { 486 { 747 //---- Extract number of voxels and voxel di 487 //---- Extract number of voxels and voxel dimensions 748 fNoVoxelsX = fZSliceHeaderMerged->GetNoVoxel << 488 fNVoxelX = fZSliceHeaderMerged->GetNoVoxelX(); 749 fNoVoxelsY = fZSliceHeaderMerged->GetNoVoxel << 489 fNVoxelY = fZSliceHeaderMerged->GetNoVoxelY(); 750 fNoVoxelsZ = fZSliceHeaderMerged->GetNoVoxel << 490 fNVoxelZ = fZSliceHeaderMerged->GetNoVoxelZ(); 751 << 491 752 fVoxelHalfDimX = fZSliceHeaderMerged->GetVox 492 fVoxelHalfDimX = fZSliceHeaderMerged->GetVoxelHalfX(); 753 fVoxelHalfDimY = fZSliceHeaderMerged->GetVox 493 fVoxelHalfDimY = fZSliceHeaderMerged->GetVoxelHalfY(); 754 fVoxelHalfDimZ = fZSliceHeaderMerged->GetVox 494 fVoxelHalfDimZ = fZSliceHeaderMerged->GetVoxelHalfZ(); 755 #ifdef G4VERBOSE 495 #ifdef G4VERBOSE 756 G4cout << " fNoVoxelsX " << fNoVoxelsX << " << 496 G4cout << " fNVoxelX " << fNVoxelX << " fVoxelHalfDimX " << fVoxelHalfDimX 757 G4cout << " fNoVoxelsY " << fNoVoxelsY << " << 497 <<G4endl; 758 G4cout << " fNoVoxelsZ " << fNoVoxelsZ << " << 498 G4cout << " fNVoxelY " << fNVoxelY << " fVoxelHalfDimY " << fVoxelHalfDimY 759 G4cout << " totalPixels " << fNoVoxelsX * fN << 499 <<G4endl; >> 500 G4cout << " fNVoxelZ " << fNVoxelZ << " fVoxelHalfDimZ " << fVoxelHalfDimZ >> 501 <<G4endl; >> 502 G4cout << " totalPixels " << fNVoxelX*fNVoxelY*fNVoxelZ << G4endl; 760 #endif 503 #endif 761 << 504 762 //----- Define the volume that contains all 505 //----- Define the volume that contains all the voxels 763 fContainer_solid = new G4Box("phantomContain << 506 fContainer_solid = new G4Box("phantomContainer",fNVoxelX*fVoxelHalfDimX, 764 fNoVoxelsY * fV << 507 fNVoxelY*fVoxelHalfDimY, >> 508 fNVoxelZ*fVoxelHalfDimZ); 765 fContainer_logic = 509 fContainer_logic = 766 new G4LogicalVolume(fContainer_solid, << 510 new G4LogicalVolume( fContainer_solid, 767 // the material is not << 511 //the material is not important, it will be fully filled by the voxels 768 fMaterials[0], "phanto << 512 fMaterials[0], >> 513 "phantomContainer", >> 514 0, 0, 0 ); 769 //--- Place it on the world 515 //--- Place it on the world 770 G4double fOffsetX = (fZSliceHeaderMerged->Ge << 516 G4double fOffsetX = (fZSliceHeaderMerged->GetMaxX() + 771 G4double fOffsetY = (fZSliceHeaderMerged->Ge << 517 fZSliceHeaderMerged->GetMinX() ) /2.; 772 G4double fOffsetZ = (fZSliceHeaderMerged->Ge << 518 G4double fOffsetY = (fZSliceHeaderMerged->GetMaxY() + 773 G4ThreeVector posCentreVoxels(fOffsetX, fOff << 519 fZSliceHeaderMerged->GetMinY() ) /2.; >> 520 G4double fOffsetZ = (fZSliceHeaderMerged->GetMaxZ() + >> 521 fZSliceHeaderMerged->GetMinZ() ) /2.; >> 522 G4ThreeVector posCentreVoxels(fOffsetX,fOffsetY,fOffsetZ); 774 #ifdef G4VERBOSE 523 #ifdef G4VERBOSE 775 G4cout << " placing voxel container volume a 524 G4cout << " placing voxel container volume at " << posCentreVoxels << G4endl; 776 #endif 525 #endif 777 fContainer_phys = new G4PVPlacement(0, // r << 526 fContainer_phys = 778 posCentr << 527 new G4PVPlacement(0, // rotation 779 fContain << 528 posCentreVoxels, 780 "phantom << 529 fContainer_logic, // The logic volume 781 fWorld_l << 530 "phantomContainer", // Name 782 false, << 531 fWorld_logic, // Mother 783 1); // << 532 false, // No op. bool. 784 } << 533 1); // Copy number 785 << 534 786 //....oooOO0OOooo........oooOO0OOooo........oo << 535 //fContainer_logic->SetVisAttributes(new G4VisAttributes(G4Colour(1.,0.,0.))); 787 void DicomDetectorConstruction::ConstructPhant << 788 { << 789 #ifdef G4_DCMTK << 790 //---- Extract number of voxels and voxel di << 791 # ifdef G4VERBOSE << 792 G4cout << " fNoVoxelsX " << fNoVoxelsX << " << 793 G4cout << " fNoVoxelsY " << fNoVoxelsY << " << 794 G4cout << " fNoVoxelsZ " << fNoVoxelsZ << " << 795 G4cout << " totalPixels " << fNoVoxelsX * fN << 796 # endif << 797 << 798 //----- Define the volume that contains all << 799 fContainer_solid = new G4Box("phantomContain << 800 fNoVoxelsY * fV << 801 fContainer_logic = << 802 new G4LogicalVolume(fContainer_solid, << 803 // the material is not << 804 fMaterials[0], "phanto << 805 << 806 G4ThreeVector posCentreVoxels((fMinX + fMaxX << 807 # ifdef G4VERBOSE << 808 G4cout << " placing voxel container volume a << 809 # endif << 810 fContainer_phys = new G4PVPlacement(0, // r << 811 posCentr << 812 fContain << 813 "phantom << 814 fWorld_l << 815 false, << 816 1); // << 817 #endif << 818 } 536 } 819 537 >> 538 #include "G4SDManager.hh" 820 #include "G4MultiFunctionalDetector.hh" 539 #include "G4MultiFunctionalDetector.hh" 821 #include "G4PSDoseDeposit.hh" 540 #include "G4PSDoseDeposit.hh" 822 #include "G4PSDoseDeposit3D.hh" 541 #include "G4PSDoseDeposit3D.hh" 823 #include "G4SDManager.hh" << 824 542 825 //....oooOO0OOooo........oooOO0OOooo........oo << 543 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo...... 826 void DicomDetectorConstruction::SetScorer(G4Lo 544 void DicomDetectorConstruction::SetScorer(G4LogicalVolume* voxel_logic) 827 { 545 { 828 #ifdef G4VERBOSE << 546 829 G4cout << "\t SET SCORER : " << voxel_logic- << 547 G4cout << "\n\n\n\n\t SET SCORER : " << voxel_logic->GetName() 830 #endif << 548 << " \n\n\n" << G4endl; 831 << 549 832 fScorers.insert(voxel_logic); 550 fScorers.insert(voxel_logic); >> 551 833 } 552 } 834 553 835 //....oooOO0OOooo........oooOO0OOooo........oo << 554 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo...... 836 555 837 void DicomDetectorConstruction::ConstructSDand 556 void DicomDetectorConstruction::ConstructSDandField() 838 { 557 { 839 #ifdef G4VERBOSE << 558 840 G4cout << "\t CONSTRUCT SD AND FIELD" << G4e << 559 G4cout << "\n\n\n\n\t CONSTRUCT SD AND FIELD \n\n\n" << G4endl; 841 #endif << 560 842 << 561 //G4SDManager* SDman = G4SDManager::GetSDMpointer(); 843 // G4SDManager* SDman = G4SDManager::GetSDMp << 562 844 << 563 //SDman->SetVerboseLevel(1); 845 // SDman->SetVerboseLevel(1); << 564 846 << 847 // 565 // 848 // Sensitive Detector Name 566 // Sensitive Detector Name 849 G4String concreteSDname = "phantomSD"; 567 G4String concreteSDname = "phantomSD"; 850 std::vector<G4String> scorer_names; 568 std::vector<G4String> scorer_names; 851 scorer_names.push_back(concreteSDname); 569 scorer_names.push_back(concreteSDname); 852 //------------------------ 570 //------------------------ 853 // MultiFunctionalDetector 571 // MultiFunctionalDetector 854 //------------------------ 572 //------------------------ 855 // 573 // 856 // Define MultiFunctionalDetector with name. 574 // Define MultiFunctionalDetector with name. 857 // declare MFDet as a MultiFunctionalDetecto 575 // declare MFDet as a MultiFunctionalDetector scorer 858 G4MultiFunctionalDetector* MFDet = new G4Mul << 576 G4MultiFunctionalDetector* MFDet = 859 G4SDManager::GetSDMpointer()->AddNewDetector << 577 new G4MultiFunctionalDetector(concreteSDname); 860 char* nest = std::getenv("DICOM_NESTED_PARAM << 578 //SDman->AddNewDetector( MFDet ); // Register SD to SDManager 861 if (nest && G4String(nest) == "1") { << 579 //G4VPrimitiveScorer* dosedep = new G4PSDoseDeposit("DoseDeposit"); 862 G4VPrimitiveScorer* dosedep = new G4PSDose << 580 G4VPrimitiveScorer* dosedep = 863 "DoseDeposit", fNoVoxelsZ, fNoVoxelsY, f << 581 new G4PSDoseDeposit3D("DoseDeposit", fNVoxelX, fNVoxelY, fNVoxelZ); 864 // - the last 3 arguments correspond to th << 582 MFDet->RegisterPrimitive(dosedep); 865 MFDet->RegisterPrimitive(dosedep); << 583 866 } << 584 for(std::set<G4LogicalVolume*>::iterator ite = fScorers.begin(); 867 else { << 585 ite != fScorers.end(); ++ite) { 868 G4VPrimitiveScorer* dosedep = new G4PSDose << 869 MFDet->RegisterPrimitive(dosedep); << 870 } << 871 << 872 for (auto ite = fScorers.cbegin(); ite != fS << 873 SetSensitiveDetector(*ite, MFDet); 586 SetSensitiveDetector(*ite, MFDet); 874 } 587 } >> 588 >> 589 /*if(DicomRunAction::Instance()->GetDicomRun()) { >> 590 DicomRunAction::Instance()->GetDicomRun()->ConstructMFD(scorer_names); >> 591 }*/ >> 592 875 } 593 } 876 594