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Geant4/examples/advanced/iort_therapy/iort_therapy.cc

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Diff markup

Differences between /examples/advanced/iort_therapy/iort_therapy.cc (Version 11.3.0) and /examples/advanced/iort_therapy/iort_therapy.cc (Version 10.3.p2)


  1 //                                                  1 //
  2 // *******************************************      2 // ********************************************************************
  3 // * License and Disclaimer                         3 // * License and Disclaimer                                           *
  4 // *                                                4 // *                                                                  *
  5 // * The  Geant4 software  is  copyright of th      5 // * The  Geant4 software  is  copyright of the Copyright Holders  of *
  6 // * the Geant4 Collaboration.  It is provided      6 // * the Geant4 Collaboration.  It is provided  under  the terms  and *
  7 // * conditions of the Geant4 Software License      7 // * conditions of the Geant4 Software License,  included in the file *
  8 // * LICENSE and available at  http://cern.ch/      8 // * LICENSE and available at  http://cern.ch/geant4/license .  These *
  9 // * include a list of copyright holders.           9 // * include a list of copyright holders.                             *
 10 // *                                               10 // *                                                                  *
 11 // * Neither the authors of this software syst     11 // * Neither the authors of this software system, nor their employing *
 12 // * institutes,nor the agencies providing fin     12 // * institutes,nor the agencies providing financial support for this *
 13 // * work  make  any representation or  warran     13 // * work  make  any representation or  warranty, express or implied, *
 14 // * regarding  this  software system or assum     14 // * regarding  this  software system or assume any liability for its *
 15 // * use.  Please see the license in the file      15 // * use.  Please see the license in the file  LICENSE  and URL above *
 16 // * for the full disclaimer and the limitatio     16 // * for the full disclaimer and the limitation of liability.         *
 17 // *                                               17 // *                                                                  *
 18 // * This  code  implementation is the result      18 // * This  code  implementation is the result of  the  scientific and *
 19 // * technical work of the GEANT4 collaboratio     19 // * technical work of the GEANT4 collaboration.                      *
 20 // * By using,  copying,  modifying or  distri     20 // * By using,  copying,  modifying or  distributing the software (or *
 21 // * any work based  on the software)  you  ag     21 // * any work based  on the software)  you  agree  to acknowledge its *
 22 // * use  in  resulting  scientific  publicati     22 // * use  in  resulting  scientific  publications,  and indicate your *
 23 // * acceptance of all terms of the Geant4 Sof     23 // * acceptance of all terms of the Geant4 Software license.          *
 24 // *******************************************     24 // ********************************************************************
 25 //                                                 25 //
 26 // This is the *BASIC* version of IORT, a Gean     26 // This is the *BASIC* version of IORT, a Geant4-based application
 27 //                                                 27 // 
 28 //                                                 28 //
 29 // -------------------------------------------     29 // ----------------------------------------------------------------------------
 30 //                 GEANT 4 - IORT example          30 //                 GEANT 4 - IORT example
 31 // -------------------------------------------     31 // ----------------------------------------------------------------------------
 32 // Main Authors:                                   32 // Main Authors:
 33 // G.Russo(a,b), C.Casarino*(c), G.C. Candiano     33 // G.Russo(a,b), C.Casarino*(c), G.C. Candiano(c), G.A.P. Cirrone(d), F.Romano(d)
 34 //                                                 34 // 
 35 // Contributor Authors:                            35 // Contributor Authors:
 36 // S.Guatelli(e)                                   36 // S.Guatelli(e)
 37 //                                                 37 //
 38 // Past Authors:                                   38 // Past Authors:
 39 // G.Arnetta(c), S.E.Mazzaglia(d)                  39 // G.Arnetta(c), S.E.Mazzaglia(d)
 40 //                                                 40 //
 41 // (a) Fondazione Istituto San Raffaele G.Gigl     41 // (a) Fondazione Istituto San Raffaele G.Giglio, Cefalù, Italy
 42 //                                                 42 //
 43 // (b) IBFM-CNR , Segrate (Milano), Italy          43 // (b) IBFM-CNR , Segrate (Milano), Italy
 44 //                                                 44 //
 45 // (c) LATO (Laboratorio di Tecnologie Oncolog     45 // (c) LATO (Laboratorio di Tecnologie Oncologiche), Cefalù, Italy
 46 //                                                 46 //
 47 // (d) Laboratori Nazionali del Sud of the INF     47 // (d) Laboratori Nazionali del Sud of the INFN, Catania, Italy
 48 //                                                 48 //
 49 // (e) University of Wollongong, Australia     <<  49 // (e) University of Wallongong, Australia
 50 //                                                 50 //
 51 //                                                 51 //
 52 //  *Corresponding Author, email to carlo.casa     52 //  *Corresponding Author, email to carlo.casarino@polooncologicocefalu.it
 53 // -------------------------------------------     53 // ----------------------------------------------------------------------------
 54                                                    54 
 55 #include "G4RunManager.hh"                         55 #include "G4RunManager.hh"
 56 #include "G4UImanager.hh"                          56 #include "G4UImanager.hh"
 57 #include "G4PhysListFactory.hh"                    57 #include "G4PhysListFactory.hh"
 58 #include "G4VModularPhysicsList.hh"                58 #include "G4VModularPhysicsList.hh"
 59 #include "IORTEventAction.hh"                      59 #include "IORTEventAction.hh"
 60 #include "IORTPhysicsList.hh"                      60 #include "IORTPhysicsList.hh"
                                                   >>  61 #include "IORTDetectorSD.hh"
 61 #include "IORTPrimaryGeneratorAction.hh"           62 #include "IORTPrimaryGeneratorAction.hh"
 62 #include "IORTRunAction.hh"                        63 #include "IORTRunAction.hh"
                                                   >>  64 #include "IORTMatrix.hh"
 63 #include "Randomize.hh"                            65 #include "Randomize.hh"  
 64 #include "G4RunManager.hh"                         66 #include "G4RunManager.hh"
 65 #include "G4UImessenger.hh"                        67 #include "G4UImessenger.hh"
 66 #include "globals.hh"                              68 #include "globals.hh"
 67 #include "IORTSteppingAction.hh"                   69 #include "IORTSteppingAction.hh"
                                                   >>  70 #include "IORTAnalysisManager.hh"
 68 #include "IORTGeometryController.hh"               71 #include "IORTGeometryController.hh"
 69 #include "IORTGeometryMessenger.hh"                72 #include "IORTGeometryMessenger.hh"
                                                   >>  73 #include "IORTInteractionParameters.hh"
                                                   >>  74 #include "G4ScoringManager.hh"
                                                   >>  75 
                                                   >>  76 
                                                   >>  77 #ifdef G4VIS_USE
 70 #include "G4VisExecutive.hh"                       78 #include "G4VisExecutive.hh"
                                                   >>  79 #endif
                                                   >>  80 
                                                   >>  81 #ifdef G4UI_USE
 71 #include "G4UIExecutive.hh"                        82 #include "G4UIExecutive.hh"
 72 #include <ctime>                               <<  83 #endif
 73 #include "G4ScoringManager.hh"                 << 
 74                                                    84 
                                                   >>  85 #include <ctime>
 75 //////////////////////////////////////////////     86 //////////////////////////////////////////////////////////////////////////////////////////////
 76                                                    87 
 77 int main(int argc ,char ** argv)                   88 int main(int argc ,char ** argv)
 78 {                                                  89 {
                                                   >>  90   // Set the Random engine
                                                   >>  91   CLHEP::HepRandom::setTheEngine(new CLHEP::RanecuEngine());
 79                                                    92 
 80 //  G4int seed = time(NULL);                   <<  93   //imported from eliot_geant4.9.3p01// to create a different seed
 81  // CLHEP::HepRandom::setTheSeed(seed);        <<  94   G4int seed = time(NULL); 
 82                                                <<  95   CLHEP::HepRandom::setTheSeed(seed);
 83   G4RunManager* runManager = new G4RunManager; <<  96   //imported from eliot_geant4.9.3p01
 84                                                <<  97         
 85   G4ScoringManager::GetScoringManager();       <<  98    G4RunManager* runManager = new G4RunManager;
 86   // Scoring mesh                              << 
 87                                                << 
 88   // Geometry controller is responsible for in     99   // Geometry controller is responsible for instantiating the
 89   // geometries. All geometry specific setup t    100   // geometries. All geometry specific setup tasks are now in class
 90   // IORTGeometryController.                      101   // IORTGeometryController.
 91   IORTGeometryController *geometryController =    102   IORTGeometryController *geometryController = new IORTGeometryController();
 92                                                   103   
 93   // Connect the geometry controller to the G4    104   // Connect the geometry controller to the G4 user interface
 94   IORTGeometryMessenger *geometryMessenger = n    105   IORTGeometryMessenger *geometryMessenger = new IORTGeometryMessenger(geometryController);
 95                                                << 106   
                                                   >> 107   G4ScoringManager *scoringManager = G4ScoringManager::GetScoringManager();
                                                   >> 108   scoringManager->SetVerboseLevel(1);
                                                   >> 109 
                                                   >> 110   
 96   // Initialize the default IORT geometry         111   // Initialize the default IORT geometry
 97   geometryController->SetGeometry("default");  << 112   geometryController->SetGeometry("default");   
                                                   >> 113   
                                                   >> 114   // Initialize command based scoring
                                                   >> 115   G4ScoringManager::GetScoringManager();
                                                   >> 116   
                                                   >> 117   // Initialize the physics 
                                                   >> 118   G4PhysListFactory factory;
                                                   >> 119   G4VModularPhysicsList* phys = 0;
                                                   >> 120   G4String physName = "";
                                                   >> 121 
                                                   >> 122   // Physics List name defined via environment variable
                                                   >> 123   char* path = getenv("PHYSLIST");
                                                   >> 124   if (path) { physName = G4String(path); }
                                                   >> 125 
                                                   >> 126  if(factory.IsReferencePhysList(physName)) 
                                                   >> 127     {
                                                   >> 128       phys = factory.GetReferencePhysList(physName);
                                                   >> 129     } 
                                                   >> 130 
                                                   >> 131   if(!phys) { phys = new IORTPhysicsList(); }
 98                                                   132 
 99   runManager->SetUserInitialization(new IORTPh << 133   runManager->SetUserInitialization(phys);
                                                   >> 134   
                                                   >> 135   //  runManager -> SetUserInitialization(new IORTPhysicsList());
100                                                   136 
101   // Initialize the primary particles             137   // Initialize the primary particles
102   IORTPrimaryGeneratorAction *pPrimaryGenerato    138   IORTPrimaryGeneratorAction *pPrimaryGenerator = new IORTPrimaryGeneratorAction();
103   runManager -> SetUserAction(pPrimaryGenerato    139   runManager -> SetUserAction(pPrimaryGenerator);
104                                                   140   
105   // Optional UserActions: run, event, steppin    141   // Optional UserActions: run, event, stepping
106   IORTRunAction* pRunAction = new IORTRunActio    142   IORTRunAction* pRunAction = new IORTRunAction();
107   runManager -> SetUserAction(pRunAction);        143   runManager -> SetUserAction(pRunAction);
108                                                   144   
109   IORTEventAction* pEventAction = new IORTEven    145   IORTEventAction* pEventAction = new IORTEventAction();
110   runManager -> SetUserAction(pEventAction);      146   runManager -> SetUserAction(pEventAction);
111                                                   147   
112   IORTSteppingAction* steppingAction = new IOR    148   IORTSteppingAction* steppingAction = new IORTSteppingAction(pRunAction); 
113   runManager -> SetUserAction(steppingAction);    149   runManager -> SetUserAction(steppingAction);    
                                                   >> 150   
                                                   >> 151   // Interaction data: stopping powers
                                                   >> 152   IORTInteractionParameters* pInteraction = new IORTInteractionParameters(true);
                                                   >> 153   
                                                   >> 154   // Initialize analysis
                                                   >> 155   IORTAnalysisManager* analysis = IORTAnalysisManager::GetInstance();
                                                   >> 156   analysis -> book();
                                                   >> 157 
114                                                   158 
                                                   >> 159 #ifdef G4VIS_USE
115   // Visualization manager                        160   // Visualization manager
116   G4VisManager* visManager = new G4VisExecutiv    161   G4VisManager* visManager = new G4VisExecutive;
117   visManager -> Initialize();                     162   visManager -> Initialize();
                                                   >> 163 #endif 
118                                                   164   
119   G4UImanager* UImanager = G4UImanager::GetUIp    165   G4UImanager* UImanager = G4UImanager::GetUIpointer();
120   if (argc!=1)   // batch mode                    166   if (argc!=1)   // batch mode
121     {                                             167     {
122       G4String command = "/control/execute ";     168       G4String command = "/control/execute ";
123       G4String fileName = argv[1];                169       G4String fileName = argv[1];
124       UImanager->ApplyCommand(command+fileName    170       UImanager->ApplyCommand(command+fileName);    
125     }                                             171     }
126   else                                            172   else
127     {  // interactive mode : define UI session    173     {  // interactive mode : define UI session
                                                   >> 174 
128                                                   175        
                                                   >> 176 #ifdef G4UI_USE
129       G4UIExecutive* ui = new G4UIExecutive(ar    177       G4UIExecutive* ui = new G4UIExecutive(argc, argv);
130                                                << 178 #ifdef G4VIS_USE
131       UImanager->ApplyCommand("/control/execut << 179       if(factory.IsReferencePhysList(physName)) 
132                                                << 180   {
                                                   >> 181     UImanager->ApplyCommand("/control/execute defaultMacroWithReferencePhysicsList.mac");
                                                   >> 182   }
                                                   >> 183       else
                                                   >> 184   {     
                                                   >> 185     UImanager->ApplyCommand("/control/execute defaultMacro.mac");  
                                                   >> 186   }
                                                   >> 187       
                                                   >> 188 #endif
133       if (ui->IsGUI())                            189       if (ui->IsGUI())
134       ui->SessionStart();                         190       ui->SessionStart();
135       delete ui;                                  191       delete ui;
                                                   >> 192 #endif 
                                                   >> 193     }
                                                   >> 194 
                                                   >> 195   // Job termination
                                                   >> 196     // Store dose & fluence data to ASCII & ROOT files 
                                                   >> 197     if ( IORTMatrix * pMatrix = IORTMatrix::GetInstance() )
                                                   >> 198     {
                                                   >> 199   pMatrix -> TotalEnergyDeposit(); 
                                                   >> 200   pMatrix -> StoreDoseFluenceAscii();
                                                   >> 201         pMatrix -> StoreDoseFluenceRoot();
136     }                                             202     }
137                                                   203 
138                                                   204 
139   delete visManager;                           << 205   analysis -> flush();     // Finalize & write the root file 
                                                   >> 206 
                                                   >> 207 #ifdef G4VIS_USE
                                                   >> 208   delete visManager;
                                                   >> 209 #endif                
                                                   >> 210 
140                                                   211 
141   delete geometryMessenger;                       212   delete geometryMessenger;
142   delete geometryController;                      213   delete geometryController;
                                                   >> 214   delete pInteraction; 
143   delete runManager;                              215   delete runManager;
144   return 0;                                       216   return 0;
145                                                   217   
146 }                                                 218 }
147                                                   219 
148                                                   220