Geant4 Cross Reference

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Geant4/examples/advanced/dna/moleculardna/molecular.cc

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Diff markup

Differences between /examples/advanced/dna/moleculardna/molecular.cc (Version 11.3.0) and /examples/advanced/dna/moleculardna/molecular.cc (Version 8.0.p1)


  1 //                                                  1 
  2 // *******************************************    
  3 // * License and Disclaimer                       
  4 // *                                              
  5 // * The  Geant4 software  is  copyright of th    
  6 // * the Geant4 Collaboration.  It is provided    
  7 // * conditions of the Geant4 Software License    
  8 // * LICENSE and available at  http://cern.ch/    
  9 // * include a list of copyright holders.         
 10 // *                                              
 11 // * Neither the authors of this software syst    
 12 // * institutes,nor the agencies providing fin    
 13 // * work  make  any representation or  warran    
 14 // * regarding  this  software system or assum    
 15 // * use.  Please see the license in the file     
 16 // * for the full disclaimer and the limitatio    
 17 // *                                              
 18 // * This  code  implementation is the result     
 19 // * technical work of the GEANT4 collaboratio    
 20 // * By using,  copying,  modifying or  distri    
 21 // * any work based  on the software)  you  ag    
 22 // * use  in  resulting  scientific  publicati    
 23 // * acceptance of all terms of the Geant4 Sof    
 24 // *******************************************    
 25 //                                                
 26 //                                                
 27 /// \file molecular.cc                            
 28 /// \brief Molecular level simulation of DNA      
 29                                                   
 30 #include "ActionInitialization.hh"                
 31 #include "DetectorConstruction.hh"                
 32 #include "PhysicsList.hh"                         
 33                                                   
 34 #include "G4DNAChemistryManager.hh"               
 35 #include "G4MoleculeGun.hh"                       
 36 #include "G4RunManagerFactory.hh"                 
 37 #include "G4UIExecutive.hh"                       
 38 #include "G4UImanager.hh"                         
 39 #include "G4VisExecutive.hh"                      
 40                                                   
 41 #include <ctime>                                  
 42                                                   
 43 //....oooOO0OOooo........oooOO0OOooo........oo    
 44                                                   
 45 namespace                                         
 46 {                                                 
 47 void PrintUsage()                                 
 48 {                                                 
 49   G4cout << " Usage: " << G4endl;                 
 50   G4cout << " molecular [-m macro ] [-t nThrea    
 51   G4cout << "   -p is the G4DNA Physics List o    
 52          << " G4EmDNAPhysics" << G4endl;          
 53   G4cout << "   note: -t option is available o    
 54 }                                                 
 55 }  // namespace                                   
 56                                                   
 57 int main(int argc, char** argv)                   
 58 {                                                 
 59   if (argc > 7) {                                 
 60     PrintUsage();                                 
 61     return 1;                                     
 62   }                                               
 63                                                   
 64   G4String macro;                                 
 65   G4int phys_option = 2;                          
 66                                                   
 67   G4int nThreads = 2;                             
 68   for (G4int ii = 1; ii < argc; ii = ii + 2) {    
 69     if (G4String(argv[ii]) == "-m") {             
 70       macro = argv[ii + 1];                       
 71     }                                             
 72     else if (G4String(argv[ii]) == "-p") {        
 73       phys_option = G4UIcommand::ConvertToInt(    
 74     }                                             
 75     else if (G4String(argv[ii]) == "-t") {        
 76       nThreads = G4UIcommand::ConvertToInt(arg    
 77     }                                             
 78     else {                                        
 79       PrintUsage();                               
 80       return 1;                                   
 81     }                                             
 82   }                                               
 83                                                   
 84   G4UIExecutive* ui = nullptr;                    
 85   if (!macro.size()) {                            
 86     ui = new G4UIExecutive(argc, argv);           
 87   }                                               
 88                                                   
 89   /*                                              
 90   time_t timeStart;                               
 91   time(&timeStart);                               
 92   long seed = timeStart;                          
 93   G4Random::setTheSeed(seed);                     
 94   */                                              
 95                                                   
 96   auto* runManager = G4RunManagerFactory::Crea    
 97   if (nThreads > 0) {                             
 98     runManager->SetNumberOfThreads(nThreads);     
 99   }                                               
100                                                   
101   runManager->SetUserInitialization(new Detect    
102   G4VModularPhysicsList* physicsList = new Phy    
103   runManager->SetUserInitialization(physicsLis    
104   runManager->SetUserInitialization(new Action    
105   G4DNAChemistryManager::Instance()->Initializ    
106                                                   
107   G4VisExecutive* visManager = nullptr;           
108                                                   
109   // Get the pointer to the User Interface man    
110   G4UImanager* UImanager = G4UImanager::GetUIp    
111   if (!macro.empty()) {                           
112     // batch mode                                 
113     G4String command = "/control/execute ";       
114     UImanager->ApplyCommand(command + macro);     
115   }                                               
116   else {                                          
117     visManager = new G4VisExecutive;              
118     visManager->Initialize();                     
119     UImanager->ApplyCommand("/control/execute     
120     ui->SessionStart();                           
121     delete ui;                                    
122     delete visManager;                            
123   }                                               
124   delete runManager;                              
125   return 0;                                       
126 }                                                 
127                                                   
128 //....oooOO0OOooo........oooOO0OOooo........oo    
129