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25 // 25 //
26 // Code developed by: 26 // Code developed by:
27 // S.Guatelli, M. Large and A. Malaroda, Unive 27 // S.Guatelli, M. Large and A. Malaroda, University of Wollongong
28 // 28 //
>> 29 #include <map>
>> 30 #include <cstdlib>
>> 31
>> 32 #include "globals.hh"
>> 33
29 #include "ICRP110PhantomConstruction.hh" 34 #include "ICRP110PhantomConstruction.hh"
30 #include "ICRP110PhantomNestedParameterisation << 35
>> 36 #include "G4SystemOfUnits.hh"
>> 37
>> 38 #include "G4RunManager.hh"
31 #include "ICRP110PhantomMaterial_Female.hh" 39 #include "ICRP110PhantomMaterial_Female.hh"
32 #include "ICRP110PhantomMaterial_Male.hh" 40 #include "ICRP110PhantomMaterial_Male.hh"
33 #include "globals.hh" <<
34 #include "G4SystemOfUnits.hh" <<
35 #include "G4Box.hh" 41 #include "G4Box.hh"
>> 42 #include "G4LogicalVolume.hh"
>> 43 #include "G4VPhysicalVolume.hh"
>> 44 #include "G4VisAttributes.hh"
36 #include "G4Colour.hh" 45 #include "G4Colour.hh"
>> 46
37 #include "G4LogicalVolume.hh" 47 #include "G4LogicalVolume.hh"
38 #include "G4PVPlacement.hh" <<
39 #include "G4PVParameterised.hh" <<
40 #include "G4VPhysicalVolume.hh" 48 #include "G4VPhysicalVolume.hh"
41 #include "G4PVPlacement.hh" 49 #include "G4PVPlacement.hh"
42 #include "G4PVParameterised.hh" 50 #include "G4PVParameterised.hh"
43 #include "G4RunManager.hh" << 51 #include "ICRP110PhantomNestedParameterisation.hh"
44 #include "G4VisAttributes.hh" <<
45 #include <map> <<
46 #include <cstdlib> <<
47 52
48 ICRP110PhantomConstruction::ICRP110PhantomCons 53 ICRP110PhantomConstruction::ICRP110PhantomConstruction():
49 fMotherVolume(nullptr), fPhantomContainer(n <<
50 fNVoxelX(0), fNVoxelY(0), fNVoxelZ(0), 54 fNVoxelX(0), fNVoxelY(0), fNVoxelZ(0),
51 fVoxelHalfDimX(0), fVoxelHalfDimY(0), fVoxe 55 fVoxelHalfDimX(0), fVoxelHalfDimY(0), fVoxelHalfDimZ(0),
52 fMinX(0),fMaxX(0), fMinY(0), fMaxY(0), 56 fMinX(0),fMaxX(0), fMinY(0), fMaxY(0),
53 fMinZ(0), fMaxZ(0), fNoFiles(0), fNVoxels(0 57 fMinZ(0), fMaxZ(0), fNoFiles(0), fNVoxels(0),
54 fMateIDs(nullptr) << 58 fMateIDs(0)
55 { 59 {
56 fMessenger = new ICRP110PhantomMessenger(thi 60 fMessenger = new ICRP110PhantomMessenger(this);
57 // the messenger allows to set the sex of th 61 // the messenger allows to set the sex of the phantom
58 // interactively 62 // interactively
59 fMaterial_Female = new ICRP110PhantomMateria 63 fMaterial_Female = new ICRP110PhantomMaterial_Female();
60 fMaterial_Male = new ICRP110PhantomMaterial_ 64 fMaterial_Male = new ICRP110PhantomMaterial_Male();
61 fSex = "female"; // Female phantom is the de 65 fSex = "female"; // Female phantom is the default option
62 fSection = "head"; // Head partial phantom i 66 fSection = "head"; // Head partial phantom is the default option
63 } 67 }
64 68
65 ICRP110PhantomConstruction::~ICRP110PhantomCon 69 ICRP110PhantomConstruction::~ICRP110PhantomConstruction()
66 { 70 {
67 delete fMaterial_Female; 71 delete fMaterial_Female;
68 delete fMaterial_Male; 72 delete fMaterial_Male;
69 delete fMessenger; 73 delete fMessenger;
70 } 74 }
71 75
72 G4VPhysicalVolume* ICRP110PhantomConstruction: 76 G4VPhysicalVolume* ICRP110PhantomConstruction::Construct()
73 { 77 {
74 // Define Material Air 78 // Define Material Air
75 G4double A; // atomic mass 79 G4double A; // atomic mass
76 G4double Z; // atomic number 80 G4double Z; // atomic number
77 G4double d; // density 81 G4double d; // density
78 82
79 A = 14.01*g/mole; 83 A = 14.01*g/mole;
80 auto elN = new G4Element("Nitrogen","N",Z = << 84 G4Element* elN = new G4Element("Nitrogen","N",Z = 7.,A);
81 A = 16.00*g/mole; 85 A = 16.00*g/mole;
82 auto elO = new G4Element("Oxygen","O",Z = 8. << 86 G4Element* elO = new G4Element("Oxygen","O",Z = 8.,A);
83 87
84 d = 0.001 *g/cm3; 88 d = 0.001 *g/cm3;
85 auto matAir = new G4Material("Air",d,2); << 89 G4Material* matAir = new G4Material("Air",d,2);
86 matAir -> AddElement(elN,0.8); 90 matAir -> AddElement(elN,0.8);
87 matAir -> AddElement(elO,0.2); 91 matAir -> AddElement(elO,0.2);
88 92
89 std::vector<G4Material*> pMaterials; 93 std::vector<G4Material*> pMaterials;
90 << 94 if(fSex == "female"){
91 if(fSex == "female"){ <<
92 95
93 fMaterial_Female -> DefineMaterials(); 96 fMaterial_Female -> DefineMaterials();
94 //----- Store materials in a vector 97 //----- Store materials in a vector
95 pMaterials.push_back(matAir); 98 pMaterials.push_back(matAir);
96 pMaterials.push_back(fMaterial_Female -> G 99 pMaterials.push_back(fMaterial_Female -> GetMaterial("teeth"));
97 pMaterials.push_back(fMaterial_Female -> G 100 pMaterials.push_back(fMaterial_Female -> GetMaterial("bone"));
98 pMaterials.push_back(fMaterial_Female -> G 101 pMaterials.push_back(fMaterial_Female -> GetMaterial("humeri_upper"));
99 pMaterials.push_back(fMaterial_Female -> G 102 pMaterials.push_back(fMaterial_Female -> GetMaterial("humeri_lower"));
100 pMaterials.push_back(fMaterial_Female -> G 103 pMaterials.push_back(fMaterial_Female -> GetMaterial("arm_lower"));
101 pMaterials.push_back(fMaterial_Female -> G 104 pMaterials.push_back(fMaterial_Female -> GetMaterial("hand"));
102 pMaterials.push_back(fMaterial_Female -> G 105 pMaterials.push_back(fMaterial_Female -> GetMaterial("clavicle"));
103 pMaterials.push_back(fMaterial_Female -> G 106 pMaterials.push_back(fMaterial_Female -> GetMaterial("cranium"));
104 pMaterials.push_back(fMaterial_Female -> G 107 pMaterials.push_back(fMaterial_Female -> GetMaterial("femora_upper"));
105 pMaterials.push_back(fMaterial_Female -> G 108 pMaterials.push_back(fMaterial_Female -> GetMaterial("femora_lower"));
106 pMaterials.push_back(fMaterial_Female -> G 109 pMaterials.push_back(fMaterial_Female -> GetMaterial("leg_lower"));
107 pMaterials.push_back(fMaterial_Female -> G 110 pMaterials.push_back(fMaterial_Female -> GetMaterial("foot"));
108 pMaterials.push_back(fMaterial_Female -> G 111 pMaterials.push_back(fMaterial_Female -> GetMaterial("mandible"));
109 pMaterials.push_back(fMaterial_Female -> G 112 pMaterials.push_back(fMaterial_Female -> GetMaterial("pelvis"));
110 pMaterials.push_back(fMaterial_Female -> G 113 pMaterials.push_back(fMaterial_Female -> GetMaterial("ribs"));
111 pMaterials.push_back(fMaterial_Female -> G 114 pMaterials.push_back(fMaterial_Female -> GetMaterial("scapulae"));
112 pMaterials.push_back(fMaterial_Female -> G 115 pMaterials.push_back(fMaterial_Female -> GetMaterial("spine_cervical"));
113 pMaterials.push_back(fMaterial_Female -> G 116 pMaterials.push_back(fMaterial_Female -> GetMaterial("spine_thoratic"));
114 pMaterials.push_back(fMaterial_Female -> G 117 pMaterials.push_back(fMaterial_Female -> GetMaterial("spine_lumbar"));
115 pMaterials.push_back(fMaterial_Female -> G 118 pMaterials.push_back(fMaterial_Female -> GetMaterial("sacrum"));
116 pMaterials.push_back(fMaterial_Female -> G 119 pMaterials.push_back(fMaterial_Female -> GetMaterial("sternum"));
117 pMaterials.push_back(fMaterial_Female -> G 120 pMaterials.push_back(fMaterial_Female -> GetMaterial("hf_upper"));
118 pMaterials.push_back(fMaterial_Female -> G 121 pMaterials.push_back(fMaterial_Female -> GetMaterial("hf_lower"));
119 pMaterials.push_back(fMaterial_Female -> G 122 pMaterials.push_back(fMaterial_Female -> GetMaterial("med_lowerarm"));
120 pMaterials.push_back(fMaterial_Female -> G 123 pMaterials.push_back(fMaterial_Female -> GetMaterial("med_lowerleg"));
121 pMaterials.push_back(fMaterial_Female -> G 124 pMaterials.push_back(fMaterial_Female -> GetMaterial("cartilage"));
122 pMaterials.push_back(fMaterial_Female -> G 125 pMaterials.push_back(fMaterial_Female -> GetMaterial("skin"));
123 pMaterials.push_back(fMaterial_Female -> G 126 pMaterials.push_back(fMaterial_Female -> GetMaterial("blood"));
124 pMaterials.push_back(fMaterial_Female -> G 127 pMaterials.push_back(fMaterial_Female -> GetMaterial("muscle"));
125 pMaterials.push_back(fMaterial_Female -> G 128 pMaterials.push_back(fMaterial_Female -> GetMaterial("liver"));
126 pMaterials.push_back(fMaterial_Female -> G 129 pMaterials.push_back(fMaterial_Female -> GetMaterial("pancreas"));
127 pMaterials.push_back(fMaterial_Female -> G 130 pMaterials.push_back(fMaterial_Female -> GetMaterial("brain"));
128 pMaterials.push_back(fMaterial_Female -> G 131 pMaterials.push_back(fMaterial_Female -> GetMaterial("heart"));
129 pMaterials.push_back(fMaterial_Female -> G 132 pMaterials.push_back(fMaterial_Female -> GetMaterial("eye"));
130 pMaterials.push_back(fMaterial_Female -> G 133 pMaterials.push_back(fMaterial_Female -> GetMaterial("kidney"));
131 pMaterials.push_back(fMaterial_Female -> G 134 pMaterials.push_back(fMaterial_Female -> GetMaterial("stomach"));
132 pMaterials.push_back(fMaterial_Female -> G 135 pMaterials.push_back(fMaterial_Female -> GetMaterial("intestine_sml"));
133 pMaterials.push_back(fMaterial_Female -> G 136 pMaterials.push_back(fMaterial_Female -> GetMaterial("intestine_lrg"));
134 pMaterials.push_back(fMaterial_Female -> G 137 pMaterials.push_back(fMaterial_Female -> GetMaterial("spleen"));
135 pMaterials.push_back(fMaterial_Female -> G 138 pMaterials.push_back(fMaterial_Female -> GetMaterial("thyroid"));
136 pMaterials.push_back(fMaterial_Female -> G 139 pMaterials.push_back(fMaterial_Female -> GetMaterial("bladder"));
137 pMaterials.push_back(fMaterial_Female -> G 140 pMaterials.push_back(fMaterial_Female -> GetMaterial("ovaries_testes"));
138 pMaterials.push_back(fMaterial_Female -> G 141 pMaterials.push_back(fMaterial_Female -> GetMaterial("adrenals"));
139 pMaterials.push_back(fMaterial_Female -> G 142 pMaterials.push_back(fMaterial_Female -> GetMaterial("oesophagus"));
140 pMaterials.push_back(fMaterial_Female -> G 143 pMaterials.push_back(fMaterial_Female -> GetMaterial("misc"));
141 pMaterials.push_back(fMaterial_Female -> G 144 pMaterials.push_back(fMaterial_Female -> GetMaterial("uterus_prostate"));
142 pMaterials.push_back(fMaterial_Female -> G 145 pMaterials.push_back(fMaterial_Female -> GetMaterial("lymph"));
143 pMaterials.push_back(fMaterial_Female -> G 146 pMaterials.push_back(fMaterial_Female -> GetMaterial("breast_glandular"));
144 pMaterials.push_back(fMaterial_Female -> G 147 pMaterials.push_back(fMaterial_Female -> GetMaterial("breast_adipose"));
145 pMaterials.push_back(fMaterial_Female -> G 148 pMaterials.push_back(fMaterial_Female -> GetMaterial("lung"));
146 pMaterials.push_back(fMaterial_Female -> G 149 pMaterials.push_back(fMaterial_Female -> GetMaterial("gastro_content"));
147 pMaterials.push_back(fMaterial_Female -> G 150 pMaterials.push_back(fMaterial_Female -> GetMaterial("urine"));
148 } 151 }
149 else if (fSex == "male"){ 152 else if (fSex == "male"){
150 // MATT do the same here 153 // MATT do the same here
151 fMaterial_Male -> DefineMaterials(); 154 fMaterial_Male -> DefineMaterials();
152 155
153 //----- Store materials in a vector 156 //----- Store materials in a vector
154 pMaterials.push_back(matAir); 157 pMaterials.push_back(matAir);
155 pMaterials.push_back(fMaterial_Male -> Get 158 pMaterials.push_back(fMaterial_Male -> GetMaterial("teeth"));
156 pMaterials.push_back(fMaterial_Male -> Get 159 pMaterials.push_back(fMaterial_Male -> GetMaterial("bone"));
157 pMaterials.push_back(fMaterial_Male -> Get 160 pMaterials.push_back(fMaterial_Male -> GetMaterial("humeri_upper"));
158 pMaterials.push_back(fMaterial_Male -> Get 161 pMaterials.push_back(fMaterial_Male -> GetMaterial("humeri_lower"));
159 pMaterials.push_back(fMaterial_Male -> Get 162 pMaterials.push_back(fMaterial_Male -> GetMaterial("arm_lower"));
160 pMaterials.push_back(fMaterial_Male -> Get 163 pMaterials.push_back(fMaterial_Male -> GetMaterial("hand"));
161 pMaterials.push_back(fMaterial_Male -> Get 164 pMaterials.push_back(fMaterial_Male -> GetMaterial("clavicle"));
162 pMaterials.push_back(fMaterial_Male -> Get 165 pMaterials.push_back(fMaterial_Male -> GetMaterial("cranium"));
163 pMaterials.push_back(fMaterial_Male -> Get 166 pMaterials.push_back(fMaterial_Male -> GetMaterial("femora_upper"));
164 pMaterials.push_back(fMaterial_Male -> Get 167 pMaterials.push_back(fMaterial_Male -> GetMaterial("femora_lower"));
165 pMaterials.push_back(fMaterial_Male -> Get 168 pMaterials.push_back(fMaterial_Male -> GetMaterial("leg_lower"));
166 pMaterials.push_back(fMaterial_Male -> Get 169 pMaterials.push_back(fMaterial_Male -> GetMaterial("foot"));
167 pMaterials.push_back(fMaterial_Male -> Get 170 pMaterials.push_back(fMaterial_Male -> GetMaterial("mandible"));
168 pMaterials.push_back(fMaterial_Male -> Get 171 pMaterials.push_back(fMaterial_Male -> GetMaterial("pelvis"));
169 pMaterials.push_back(fMaterial_Male -> Get 172 pMaterials.push_back(fMaterial_Male -> GetMaterial("ribs"));
170 pMaterials.push_back(fMaterial_Male -> Get 173 pMaterials.push_back(fMaterial_Male -> GetMaterial("scapulae"));
171 pMaterials.push_back(fMaterial_Male -> Get 174 pMaterials.push_back(fMaterial_Male -> GetMaterial("spine_cervical"));
172 pMaterials.push_back(fMaterial_Male -> Get 175 pMaterials.push_back(fMaterial_Male -> GetMaterial("spine_thoratic"));
173 pMaterials.push_back(fMaterial_Male -> Get 176 pMaterials.push_back(fMaterial_Male -> GetMaterial("spine_lumbar"));
174 pMaterials.push_back(fMaterial_Male -> Get 177 pMaterials.push_back(fMaterial_Male -> GetMaterial("sacrum"));
175 pMaterials.push_back(fMaterial_Male -> Get 178 pMaterials.push_back(fMaterial_Male -> GetMaterial("sternum"));
176 pMaterials.push_back(fMaterial_Male -> Get 179 pMaterials.push_back(fMaterial_Male -> GetMaterial("hf_upper"));
177 pMaterials.push_back(fMaterial_Male -> Get 180 pMaterials.push_back(fMaterial_Male -> GetMaterial("hf_lower"));
178 pMaterials.push_back(fMaterial_Male -> Get 181 pMaterials.push_back(fMaterial_Male -> GetMaterial("med_lowerarm"));
179 pMaterials.push_back(fMaterial_Male -> Get 182 pMaterials.push_back(fMaterial_Male -> GetMaterial("med_lowerleg"));
180 pMaterials.push_back(fMaterial_Male -> Get 183 pMaterials.push_back(fMaterial_Male -> GetMaterial("cartilage"));
181 pMaterials.push_back(fMaterial_Male -> Get 184 pMaterials.push_back(fMaterial_Male -> GetMaterial("skin"));
182 pMaterials.push_back(fMaterial_Male -> Get 185 pMaterials.push_back(fMaterial_Male -> GetMaterial("blood"));
183 pMaterials.push_back(fMaterial_Male -> Get 186 pMaterials.push_back(fMaterial_Male -> GetMaterial("muscle"));
184 pMaterials.push_back(fMaterial_Male -> Get 187 pMaterials.push_back(fMaterial_Male -> GetMaterial("liver"));
185 pMaterials.push_back(fMaterial_Male -> Get 188 pMaterials.push_back(fMaterial_Male -> GetMaterial("pancreas"));
186 pMaterials.push_back(fMaterial_Male -> Get 189 pMaterials.push_back(fMaterial_Male -> GetMaterial("brain"));
187 pMaterials.push_back(fMaterial_Male -> Get 190 pMaterials.push_back(fMaterial_Male -> GetMaterial("heart"));
188 pMaterials.push_back(fMaterial_Male -> Get 191 pMaterials.push_back(fMaterial_Male -> GetMaterial("eye"));
189 pMaterials.push_back(fMaterial_Male -> Get 192 pMaterials.push_back(fMaterial_Male -> GetMaterial("kidney"));
190 pMaterials.push_back(fMaterial_Male -> Get 193 pMaterials.push_back(fMaterial_Male -> GetMaterial("stomach"));
191 pMaterials.push_back(fMaterial_Male -> Get 194 pMaterials.push_back(fMaterial_Male -> GetMaterial("intestine_sml"));
192 pMaterials.push_back(fMaterial_Male -> Get 195 pMaterials.push_back(fMaterial_Male -> GetMaterial("intestine_lrg"));
193 pMaterials.push_back(fMaterial_Male -> Get 196 pMaterials.push_back(fMaterial_Male -> GetMaterial("spleen"));
194 pMaterials.push_back(fMaterial_Male -> Get 197 pMaterials.push_back(fMaterial_Male -> GetMaterial("thyroid"));
195 pMaterials.push_back(fMaterial_Male -> Get 198 pMaterials.push_back(fMaterial_Male -> GetMaterial("bladder"));
196 pMaterials.push_back(fMaterial_Male -> Get 199 pMaterials.push_back(fMaterial_Male -> GetMaterial("ovaries_testes"));
197 pMaterials.push_back(fMaterial_Male -> Get 200 pMaterials.push_back(fMaterial_Male -> GetMaterial("adrenals"));
198 pMaterials.push_back(fMaterial_Male -> Get 201 pMaterials.push_back(fMaterial_Male -> GetMaterial("oesophagus"));
199 pMaterials.push_back(fMaterial_Male -> Get 202 pMaterials.push_back(fMaterial_Male -> GetMaterial("misc"));
200 pMaterials.push_back(fMaterial_Male -> Get 203 pMaterials.push_back(fMaterial_Male -> GetMaterial("uterus_prostate"));
201 pMaterials.push_back(fMaterial_Male -> Get 204 pMaterials.push_back(fMaterial_Male -> GetMaterial("lymph"));
202 pMaterials.push_back(fMaterial_Male -> Get 205 pMaterials.push_back(fMaterial_Male -> GetMaterial("breast_glandular"));
203 pMaterials.push_back(fMaterial_Male -> Get 206 pMaterials.push_back(fMaterial_Male -> GetMaterial("breast_adipose"));
204 pMaterials.push_back(fMaterial_Male -> Get 207 pMaterials.push_back(fMaterial_Male -> GetMaterial("lung"));
205 pMaterials.push_back(fMaterial_Male -> Get 208 pMaterials.push_back(fMaterial_Male -> GetMaterial("gastro_content"));
206 pMaterials.push_back(fMaterial_Male -> Get 209 pMaterials.push_back(fMaterial_Male -> GetMaterial("urine"));
207 210
208 } 211 }
209 212
210 // World Volume 213 // World Volume
211 G4double worldSize = 2.*m ; 214 G4double worldSize = 2.*m ;
212 G4Box* world = new G4Box("world", worldSize, 215 G4Box* world = new G4Box("world", worldSize, worldSize, worldSize);
213 216
214 auto logicWorld = new G4LogicalVolume(world, << 217 G4LogicalVolume* logicWorld = new G4LogicalVolume(world,
215 matAir, << 218 matAir,
216 "logicalWorld", nullptr, null << 219 "logicalWorld", 0, 0,0);
217 << 220
218 fMotherVolume = new G4PVPlacement(nullptr,G4 << 221 G4VPhysicalVolume* motherVolume = new G4PVPlacement(0,G4ThreeVector(),
219 "physicalWorld", << 222 "physicalWorld",
220 logicWorld, << 223 logicWorld,
221 nullptr, << 224 0,
222 false, << 225 false,
223 0); << 226 0);
224 227
225 logicWorld -> SetVisAttributes(G4VisAttribut 228 logicWorld -> SetVisAttributes(G4VisAttributes::GetInvisible());
226 229
227 G4cout << "World has been built" << G4endl; 230 G4cout << "World has been built" << G4endl;
228 231
229 G4cout << "Phantom Sex: " << fSex << G4endl; 232 G4cout << "Phantom Sex: " << fSex << G4endl;
230 G4cout << "Phantom Section: " << fSection << 233 G4cout << "Phantom Section: " << fSection << G4endl;
231 ReadPhantomData(fSex, fSection); 234 ReadPhantomData(fSex, fSection);
232 235
233 G4cout << "Number of X,Y,Z voxels = " << fNV 236 G4cout << "Number of X,Y,Z voxels = " << fNVoxelX << ", " << fNVoxelY << ", " << fNVoxelZ << G4endl;
234 237
235 //----- Define the volume that contains all th 238 //----- Define the volume that contains all the voxels
236 G4Box* fContainer_solid = new G4Box("phantom 239 G4Box* fContainer_solid = new G4Box("phantomContainer",fNVoxelX*fVoxelHalfDimX*mm,
237 fNVoxelY*fVoxel 240 fNVoxelY*fVoxelHalfDimY*mm,
238 fNVoxelZ*fVoxel 241 fNVoxelZ*fVoxelHalfDimZ*mm);
239 242
240 auto fContainer_logic = new G4LogicalVolume( << 243 G4LogicalVolume* fContainer_logic = new G4LogicalVolume( fContainer_solid,
241 244 matAir,
242 245 "phantomContainer",
243 << 246 0, 0, 0 );
244 247
245 fMaxX = fNVoxelX*fVoxelHalfDimX*mm; // Max X 248 fMaxX = fNVoxelX*fVoxelHalfDimX*mm; // Max X along X axis of the voxelised geometry
246 fMaxY = fNVoxelY*fVoxelHalfDimY*mm; // Max Y 249 fMaxY = fNVoxelY*fVoxelHalfDimY*mm; // Max Y
247 fMaxZ = fNVoxelZ*fVoxelHalfDimZ*mm; // Max Z 250 fMaxZ = fNVoxelZ*fVoxelHalfDimZ*mm; // Max Z
248 251
249 fMinX = -fNVoxelX*fVoxelHalfDimX*mm;// Min X 252 fMinX = -fNVoxelX*fVoxelHalfDimX*mm;// Min X
250 fMinY = -fNVoxelY*fVoxelHalfDimY*mm;// Min Y 253 fMinY = -fNVoxelY*fVoxelHalfDimY*mm;// Min Y
251 fMinZ = -fNVoxelZ*fVoxelHalfDimZ*mm;// Min Z 254 fMinZ = -fNVoxelZ*fVoxelHalfDimZ*mm;// Min Z
252 255
253 G4ThreeVector posCentreVoxels((fMinX+fMaxX)/ 256 G4ThreeVector posCentreVoxels((fMinX+fMaxX)/2.,(fMinY+fMaxY)/2.,(fMinZ+fMaxZ)/2.);
254 257
255 G4cout << " placing voxel container volume a 258 G4cout << " placing voxel container volume at " << posCentreVoxels << G4endl;
256 259
257 260
258 fPhantomContainer << 261 new G4PVPlacement(0, // rotation
259 = new G4PVPlacement(nullptr, <<
260 posCentreVoxels, 262 posCentreVoxels,
261 fContainer_logic, // 263 fContainer_logic, // The logic volume
262 "phantomContainer", // 264 "phantomContainer", // Name
263 logicWorld, // M 265 logicWorld, // Mother
264 false, // No 266 false, // No op. bool.
265 1); // Copy 267 1); // Copy number
266 268
267 fContainer_logic -> SetVisAttributes(new G4V 269 fContainer_logic -> SetVisAttributes(new G4VisAttributes(G4Colour(1.,0.,0.,0.)));
268 270
269 271
270 // Define the voxelised phantom here 272 // Define the voxelised phantom here
271 // Replication of air Phantom Volume. 273 // Replication of air Phantom Volume.
272 274
273 //--- Slice the phantom along Y axis 275 //--- Slice the phantom along Y axis
274 G4String yRepName("RepY"); 276 G4String yRepName("RepY");
275 G4VSolid* solYRep = new G4Box(yRepName,fNVo 277 G4VSolid* solYRep = new G4Box(yRepName,fNVoxelX*fVoxelHalfDimX,
276 fVoxelHalfDi 278 fVoxelHalfDimY, fNVoxelZ*fVoxelHalfDimZ);
277 auto logYRep = new G4LogicalVolume(solYRep, << 279 G4LogicalVolume* logYRep = new G4LogicalVolume(solYRep,matAir,yRepName);
278 new G4PVReplica(yRepName,logYRep,fContainer 280 new G4PVReplica(yRepName,logYRep,fContainer_logic,kYAxis, fNVoxelY,fVoxelHalfDimY*2.);
279 281
280 logYRep -> SetVisAttributes(new G4VisAttrib 282 logYRep -> SetVisAttributes(new G4VisAttributes(G4VisAttributes::GetInvisible()));
281 283
282 //--- Slice the phantom along X axis 284 //--- Slice the phantom along X axis
283 G4String xRepName("RepX"); 285 G4String xRepName("RepX");
284 G4VSolid* solXRep = new G4Box(xRepName,fVox 286 G4VSolid* solXRep = new G4Box(xRepName,fVoxelHalfDimX,fVoxelHalfDimY,
285 fNVoxelZ*fVo 287 fNVoxelZ*fVoxelHalfDimZ);
286 auto logXRep = new G4LogicalVolume(solXRep, << 288 G4LogicalVolume* logXRep = new G4LogicalVolume(solXRep,matAir,xRepName);
287 new G4PVReplica(xRepName,logXRep,logYRep,kX 289 new G4PVReplica(xRepName,logXRep,logYRep,kXAxis,fNVoxelX,fVoxelHalfDimX*2.);
288 290
289 logXRep -> SetVisAttributes(new G4VisAttrib 291 logXRep -> SetVisAttributes(new G4VisAttributes(G4VisAttributes::GetInvisible()));
290 292
291 //----- Voxel solid and logical volumes 293 //----- Voxel solid and logical volumes
292 //--- Slice along Z axis 294 //--- Slice along Z axis
293 G4VSolid* solidVoxel = new G4Box("phantom", 295 G4VSolid* solidVoxel = new G4Box("phantom",fVoxelHalfDimX, fVoxelHalfDimY,fVoxelHalfDimZ);
294 auto logicVoxel = new G4LogicalVolume(solid << 296 G4LogicalVolume* logicVoxel = new G4LogicalVolume(solidVoxel,matAir,"phantom");
295 297
296 logicVoxel -> SetVisAttributes(new G4VisAtt << 298 logicVoxel -> SetVisAttributes(new G4VisAttributes(G4VisAttributes::GetInvisible()));
297 299
298 // Parameterisation to define the material << 300 // Parameterisation to define the material of each voxel
299 G4ThreeVector halfVoxelSize(fVoxelHalfDimX, << 301 G4ThreeVector halfVoxelSize(fVoxelHalfDimX,fVoxelHalfDimY,fVoxelHalfDimZ);
300 302
301 auto param = new ICRP110PhantomNestedParam << 303 ICRP110PhantomNestedParameterisation* param = new ICRP110PhantomNestedParameterisation(halfVoxelSize, pMaterials);
302 304
303 new G4PVParameterised("phantom", // thei << 305 new G4PVParameterised("phantom", // their name
304 logicVoxel, // their 306 logicVoxel, // their logical volume
305 logXRep, // Mot 307 logXRep, // Mother logical volume
306 kZAxis, // Are 308 kZAxis, // Are placed along this axis
307 fNVoxelZ, // Nu 309 fNVoxelZ, // Number of cells
308 param); // Par 310 param); // Parameterisation
309 311
310 param -> SetMaterialIndices(fMateIDs); // 312 param -> SetMaterialIndices(fMateIDs); // fMateIDs is the vector with Material ID associated to each voxel, from ASCII input data files.
311 param -> SetNoVoxel(fNVoxelX,fNVoxelY,fNVo 313 param -> SetNoVoxel(fNVoxelX,fNVoxelY,fNVoxelZ);
312 314
313 return fMotherVolume; << 315 return motherVolume;
314 } 316 }
315 317
316 void ICRP110PhantomConstruction::ReadPhantomDa 318 void ICRP110PhantomConstruction::ReadPhantomData(const G4String& sex, const G4String& section)
317 { 319 {
318 320
319 // This method reads the information of ICRP 321 // This method reads the information of ICRPdata/FemaleData.dat or
320 // ICRPdata/MaleData.data depending on the s 322 // ICRPdata/MaleData.data depending on the sex of the chosen phantom
321 323
322 fSex = sex; 324 fSex = sex;
323 fSection = section; 325 fSection = section;
324 326
325 G4String dataFile; 327 G4String dataFile;
326 328
327 if (fSex == "female") 329 if (fSex == "female")
328 { 330 {
329 if (fSection == "head") 331 if (fSection == "head")
330 { 332 {
331 dataFile = "ICRPdata/FemaleHead.dat" 333 dataFile = "ICRPdata/FemaleHead.dat";
332 } 334 }
333 else if (fSection == "trunk") 335 else if (fSection == "trunk")
334 { 336 {
335 dataFile = "ICRPdata/FemaleTrunk.dat 337 dataFile = "ICRPdata/FemaleTrunk.dat";
336 } 338 }
337 else if (fSection == "full") 339 else if (fSection == "full")
338 { 340 {
339 dataFile = "ICRPdata/FemaleData.dat" 341 dataFile = "ICRPdata/FemaleData.dat";
340 } 342 }
341 } 343 }
342 if (fSex == "male") 344 if (fSex == "male")
343 { 345 {
344 if (fSection == "head") 346 if (fSection == "head")
345 { 347 {
346 dataFile = "ICRPdata/MaleHead.dat"; 348 dataFile = "ICRPdata/MaleHead.dat";
347 } 349 }
348 else if (fSection == "trunk") 350 else if (fSection == "trunk")
349 { 351 {
350 dataFile = "ICRPdata/MaleTrunk.dat"; 352 dataFile = "ICRPdata/MaleTrunk.dat";
351 } 353 }
352 else if (fSection == "full") 354 else if (fSection == "full")
353 { 355 {
354 dataFile = "ICRPdata/MaleData.dat"; 356 dataFile = "ICRPdata/MaleData.dat";
355 } 357 }
356 } 358 }
357 359
358 G4cout << "Data file " << dataFile << " is 360 G4cout << "Data file " << dataFile << " is read by Detector Construction." << G4endl;
359 361
360 // The data.dat file in directory/build/ICRPda 362 // The data.dat file in directory/build/ICRPdata/ contains the information
361 // to build the phantoms. For more details loo 363 // to build the phantoms. For more details look in the README file.
362 364
363 //input file named finDF which consists of d 365 //input file named finDF which consists of dataFile as a string object
364 std::ifstream finDF(dataFile.c_str()); 366 std::ifstream finDF(dataFile.c_str());
365 367
366 368
367 G4String fname; 369 G4String fname;
368 370
369 if(finDF.good() != 1 ) //check that the file i 371 if(finDF.good() != 1 ) //check that the file is good and working
370 { 372 {
371 G4String descript = "Problem reading data fi 373 G4String descript = "Problem reading data file: "+dataFile;
372 G4Exception(" HumanPhantomConstruction::Read 374 G4Exception(" HumanPhantomConstruction::ReadPhantomData"," ",
373 FatalException,descript); 375 FatalException,descript);
374 } 376 }
375 377
376 finDF >> fNoFiles; 378 finDF >> fNoFiles;
377 G4cout << "Number of files = " << fNoFiles < 379 G4cout << "Number of files = " << fNoFiles << G4endl;
378 finDF >> fNVoxelX; //Inputs number of X 380 finDF >> fNVoxelX; //Inputs number of X-Voxels
379 finDF >> fNVoxelY; //Y-Voxels 381 finDF >> fNVoxelY; //Y-Voxels
380 fNVoxelZ = fNoFiles; //Z-Voxels (equal to 382 fNVoxelZ = fNoFiles; //Z-Voxels (equal to number of slice files built/read)
381 finDF >> fVoxelHalfDimX; 383 finDF >> fVoxelHalfDimX;
382 finDF >> fVoxelHalfDimY; 384 finDF >> fVoxelHalfDimY;
383 finDF >> fVoxelHalfDimZ; 385 finDF >> fVoxelHalfDimZ;
384 G4cout << "Number of X,Y,Z voxels = " << fNV 386 G4cout << "Number of X,Y,Z voxels = " << fNVoxelX << ", " << fNVoxelY << ", " << fNVoxelZ <<G4endl;
385 387
386 fNVoxels = fNVoxelX*fNVoxelY*fNVoxelZ; 388 fNVoxels = fNVoxelX*fNVoxelY*fNVoxelZ;
387 G4cout << "Total Number of Voxels = " << fNV 389 G4cout << "Total Number of Voxels = " << fNVoxels << G4endl;
388 390
389 G4int nMaterials; 391 G4int nMaterials;
390 finDF >> nMaterials; 392 finDF >> nMaterials;
391 G4String mateName; 393 G4String mateName;
392 G4int nmate; 394 G4int nmate;
393 395
394 //-----Read materials and associate with mater 396 //-----Read materials and associate with material ID number------//
395 397
396 for( G4int ii = 0; ii < nMaterials; ii++ ){ 398 for( G4int ii = 0; ii < nMaterials; ii++ ){
397 finDF >> nmate; 399 finDF >> nmate;
398 finDF >> mateName; 400 finDF >> mateName;
399 401
400 // This allows to skip empty spaces and ta 402 // This allows to skip empty spaces and tabs in the string
401 if( mateName[0] == '"' && mateName[mateNam 403 if( mateName[0] == '"' && mateName[mateName.length()-1] == '"' )
402 { 404 {
403 mateName = mateName.substr(1,mateName.le 405 mateName = mateName.substr(1,mateName.length()-2);
404 } 406 }
405 407
406 // To uncomment for eventual debugging 408 // To uncomment for eventual debugging
407 /* G4cout << "GmReadPhantomG4Geometry::Rea 409 /* G4cout << "GmReadPhantomG4Geometry::ReadPhantomData reading nmate "
408 << ii << " = " << nmate 410 << ii << " = " << nmate
409 << " mate " << mateName << G4endl;* 411 << " mate " << mateName << G4endl;*/
410 412
411 if( ii != nmate ) { 413 if( ii != nmate ) {
412 G4Exception("GmReadPhantomG4Geometry::Read 414 G4Exception("GmReadPhantomG4Geometry::ReadPhantomData",
413 "Wrong argument", 415 "Wrong argument",
414 FatalErrorInArgument, 416 FatalErrorInArgument,
415 "Material number should be in 417 "Material number should be in increasing order:wrong material number");
416 } 418 }
417 } 419 }
418 420
419 fMateIDs = new size_t[fNVoxels]; //Array with 421 fMateIDs = new size_t[fNVoxels]; //Array with Material ID for each voxel
420 422
421 G4cout << "ICRP110PhantomConstruction::ReadPha 423 G4cout << "ICRP110PhantomConstruction::ReadPhantomDataFile is openining the following phantom files: " << G4endl;
422 424
423 for(G4int i = 0; i < fNoFiles; i++ ) 425 for(G4int i = 0; i < fNoFiles; i++ )
424 { 426 {
425 finDF >> fname; 427 finDF >> fname;
426 ReadPhantomDataFile(fSex, fname, i); 428 ReadPhantomDataFile(fSex, fname, i);
427 } 429 }
428 430
429 finDF.close(); 431 finDF.close();
430 } 432 }
431 433
432 //----------------Opens phantom ASCII slice fi 434 //----------------Opens phantom ASCII slice files to construct the phantom from-----------------//
433 435
434 void ICRP110PhantomConstruction::ReadPhantomDa 436 void ICRP110PhantomConstruction::ReadPhantomDataFile(const G4String& sex, const G4String& fileName, G4int numberFile)
435 { 437 {
436 G4cout << fileName << G4endl; 438 G4cout << fileName << G4endl;
437 439
438 fSex = sex; 440 fSex = sex;
439 441
440 G4String slice; 442 G4String slice;
441 443
442 if (fSex == "female") 444 if (fSex == "female")
443 { 445 {
444 slice = "ICRPdata/ICRP110_g4dat/AF/"+fil 446 slice = "ICRPdata/ICRP110_g4dat/AF/"+fileName;
445 } 447 }
446 if (fSex == "male") 448 if (fSex == "male")
447 { 449 {
448 slice = "ICRPdata/ICRP110_g4dat/AM/"+fil 450 slice = "ICRPdata/ICRP110_g4dat/AM/"+fileName;
449 } 451 }
450 452
451 std::ifstream fin(slice.c_str(), std::ios_ba 453 std::ifstream fin(slice.c_str(), std::ios_base::in);
452 454
453 if( !fin.is_open() ) { 455 if( !fin.is_open() ) {
454 G4Exception("HumanPhantomConstruction::Rea 456 G4Exception("HumanPhantomConstruction::ReadPhantomDataFile",
455 "", 457 "",
456 FatalErrorInArgument, 458 FatalErrorInArgument,
457 G4String("File not found " + f 459 G4String("File not found " + fileName ).c_str());
458 } 460 }
459 461
460 for( G4int iy = 0; iy < fNVoxelY; iy++ ) { 462 for( G4int iy = 0; iy < fNVoxelY; iy++ ) {
461 for( G4int ix = 0; ix < fNVoxelX; ix++ ) 463 for( G4int ix = 0; ix < fNVoxelX; ix++ ) {
462 if (ix == 0 && iy == 0) 464 if (ix == 0 && iy == 0)
463 { 465 {
464 G4int dudX,dudY,dudZ; 466 G4int dudX,dudY,dudZ;
465 fin >> dudX >> dudY >> dudZ ; 467 fin >> dudX >> dudY >> dudZ ;
466 // Dummy method to skip the first th 468 // Dummy method to skip the first three lines of the files
467 // which are not used here 469 // which are not used here
468 } 470 }
469 << 471 else{
470 G4int nnew = ix + (iy)*fNVoxelX + numb 472 G4int nnew = ix + (iy)*fNVoxelX + numberFile*fNVoxelX*fNVoxelY;
471 G4int OrgID; 473 G4int OrgID;
472 fin >> OrgID; 474 fin >> OrgID;
473 475
474 G4int mateID_out; 476 G4int mateID_out;
475 477
476 // The code below associates organ ID numbers 478 // The code below associates organ ID numbers (called here mateID) from ASCII slice
477 // files with material ID numbers (called here 479 // files with material ID numbers (called here mateID_out) as defined in ICRP110PhantomMaterials
478 // Material and Organ IDs are associated as st 480 // Material and Organ IDs are associated as stated in AM_organs.dat and FM_organs.dat depending on
479 // the sex of the phantom (male and female, re 481 // the sex of the phantom (male and female, respctively)
480 482
481 if (OrgID==128) 483 if (OrgID==128)
482 { 484 {
483 mateID_out=1; 485 mateID_out=1;
484 } 486 }
485 487
486 else if (OrgID==13 || OrgID==16 || OrgID==19 488 else if (OrgID==13 || OrgID==16 || OrgID==19 || OrgID==22 || OrgID==24 || OrgID==26 || OrgID==28 || OrgID==31 || OrgID==34 || OrgID==37 || OrgID==39 || OrgID==41 || OrgID==43 || OrgID==45 || OrgID==47 || OrgID==49 || OrgID==51 || OrgID==53 || OrgID==55)
487 { 489 {
488 mateID_out=2; 490 mateID_out=2;
489 } 491 }
490 492
491 else if (OrgID==14) 493 else if (OrgID==14)
492 { 494 {
493 mateID_out=3; 495 mateID_out=3;
494 } 496 }
495 497
496 else if (OrgID==17) 498 else if (OrgID==17)
497 { 499 {
498 mateID_out=4; 500 mateID_out=4;
499 } 501 }
500 502
501 else if (OrgID==20) 503 else if (OrgID==20)
502 { 504 {
503 mateID_out=5; 505 mateID_out=5;
504 } 506 }
505 507
506 else if (OrgID==23) 508 else if (OrgID==23)
507 { 509 {
508 mateID_out=6; 510 mateID_out=6;
509 } 511 }
510 512
511 else if (OrgID==25) 513 else if (OrgID==25)
512 { 514 {
513 mateID_out=7; 515 mateID_out=7;
514 } 516 }
515 517
516 else if (OrgID==27) 518 else if (OrgID==27)
517 { 519 {
518 mateID_out=8; 520 mateID_out=8;
519 } 521 }
520 522
521 else if (OrgID==29) 523 else if (OrgID==29)
522 { 524 {
523 mateID_out=9; 525 mateID_out=9;
524 } 526 }
525 527
526 else if (OrgID==32) 528 else if (OrgID==32)
527 { 529 {
528 mateID_out=10; 530 mateID_out=10;
529 } 531 }
530 532
531 else if (OrgID==35) 533 else if (OrgID==35)
532 { 534 {
533 mateID_out=11; 535 mateID_out=11;
534 } 536 }
535 537
536 else if (OrgID==38) 538 else if (OrgID==38)
537 { 539 {
538 mateID_out=12; 540 mateID_out=12;
539 } 541 }
540 542
541 else if (OrgID==40) 543 else if (OrgID==40)
542 { 544 {
543 mateID_out=13; 545 mateID_out=13;
544 } 546 }
545 547
546 else if (OrgID==42) 548 else if (OrgID==42)
547 { 549 {
548 mateID_out=14; 550 mateID_out=14;
549 } 551 }
550 552
551 else if (OrgID==44) 553 else if (OrgID==44)
552 { 554 {
553 mateID_out=15; 555 mateID_out=15;
554 } 556 }
555 557
556 else if (OrgID==46) 558 else if (OrgID==46)
557 { 559 {
558 mateID_out=16; 560 mateID_out=16;
559 } 561 }
560 562
561 else if (OrgID==48) 563 else if (OrgID==48)
562 { 564 {
563 mateID_out=17; 565 mateID_out=17;
564 } 566 }
565 567
566 else if (OrgID==50) 568 else if (OrgID==50)
567 { 569 {
568 mateID_out=18; 570 mateID_out=18;
569 } 571 }
570 572
571 else if (OrgID==52) 573 else if (OrgID==52)
572 { 574 {
573 mateID_out=19; 575 mateID_out=19;
574 } 576 }
575 577
576 else if (OrgID==54) 578 else if (OrgID==54)
577 { 579 {
578 mateID_out=20; 580 mateID_out=20;
579 } 581 }
580 582
581 else if (OrgID==56) 583 else if (OrgID==56)
582 { 584 {
583 mateID_out=21; 585 mateID_out=21;
584 } 586 }
585 587
586 else if (OrgID==15 || OrgID==30) 588 else if (OrgID==15 || OrgID==30)
587 { 589 {
588 mateID_out=22; 590 mateID_out=22;
589 } 591 }
590 592
591 else if (OrgID==18 || OrgID==33) 593 else if (OrgID==18 || OrgID==33)
592 { 594 {
593 mateID_out=23; 595 mateID_out=23;
594 } 596 }
595 597
596 else if (OrgID==21) 598 else if (OrgID==21)
597 { 599 {
598 mateID_out=24; 600 mateID_out=24;
599 } 601 }
600 602
601 else if (OrgID==36) 603 else if (OrgID==36)
602 { 604 {
603 mateID_out=25; 605 mateID_out=25;
604 } 606 }
605 607
606 else if (OrgID==57 || OrgID==58 || OrgID==59 608 else if (OrgID==57 || OrgID==58 || OrgID==59 || OrgID==60)
607 { 609 {
608 mateID_out=26; 610 mateID_out=26;
609 } 611 }
610 612
611 else if (OrgID==122 || OrgID==123 || OrgID== 613 else if (OrgID==122 || OrgID==123 || OrgID==124 || OrgID==125 || OrgID==141 )
612 { 614 {
613 mateID_out=27; 615 mateID_out=27;
614 } 616 }
615 617
616 else if (OrgID==9 || OrgID==10 || OrgID==11 618 else if (OrgID==9 || OrgID==10 || OrgID==11 || OrgID==12 || OrgID==88 || OrgID==96 || OrgID==98)
617 { 619 {
618 mateID_out=28; 620 mateID_out=28;
619 } 621 }
620 622
621 else if (OrgID==5 || OrgID==6 || OrgID==106 623 else if (OrgID==5 || OrgID==6 || OrgID==106 || OrgID==107 || OrgID==108 || OrgID==109 || OrgID==133)
622 { 624 {
623 mateID_out=29; 625 mateID_out=29;
624 } 626 }
625 627
626 else if (OrgID==95) 628 else if (OrgID==95)
627 { 629 {
628 mateID_out=30; 630 mateID_out=30;
629 } 631 }
630 632
631 else if (OrgID==113) 633 else if (OrgID==113)
632 { 634 {
633 mateID_out=31; 635 mateID_out=31;
634 } 636 }
635 637
636 else if (OrgID==61) 638 else if (OrgID==61)
637 { 639 {
638 mateID_out=32; 640 mateID_out=32;
639 } 641 }
640 642
641 else if (OrgID==87) 643 else if (OrgID==87)
642 { 644 {
643 mateID_out=33; 645 mateID_out=33;
644 } 646 }
645 647
646 else if (OrgID==66 || OrgID==67 || OrgID==68 648 else if (OrgID==66 || OrgID==67 || OrgID==68 || OrgID==69)
647 { 649 {
648 mateID_out=34; 650 mateID_out=34;
649 } 651 }
650 652
651 else if (OrgID==89 || OrgID==90 || OrgID==91 653 else if (OrgID==89 || OrgID==90 || OrgID==91 || OrgID==92 || OrgID==93 || OrgID==94)
652 { 654 {
653 mateID_out=35; 655 mateID_out=35;
654 } 656 }
655 657
656 else if (OrgID==72) 658 else if (OrgID==72)
657 { 659 {
658 mateID_out=36; 660 mateID_out=36;
659 } 661 }
660 662
661 else if (OrgID==74) 663 else if (OrgID==74)
662 { 664 {
663 mateID_out=37; 665 mateID_out=37;
664 } 666 }
665 667
666 else if (OrgID==76 || OrgID==78 || OrgID==80 668 else if (OrgID==76 || OrgID==78 || OrgID==80 || OrgID==82 || OrgID==84 || OrgID==86)
667 { 669 {
668 mateID_out=38; 670 mateID_out=38;
669 } 671 }
670 672
671 else if (OrgID==127) 673 else if (OrgID==127)
672 { 674 {
673 mateID_out=39; 675 mateID_out=39;
674 } 676 }
675 677
676 else if (OrgID==132) 678 else if (OrgID==132)
677 { 679 {
678 mateID_out=40; 680 mateID_out=40;
679 } 681 }
680 682
681 else if (OrgID==137) 683 else if (OrgID==137)
682 { 684 {
683 mateID_out=41; 685 mateID_out=41;
684 } 686 }
685 687
686 else if (OrgID==111 || OrgID==112 || OrgID== 688 else if (OrgID==111 || OrgID==112 || OrgID==129 || OrgID==130)
687 { 689 {
688 mateID_out=42; 690 mateID_out=42;
689 } 691 }
690 692
691 else if (OrgID==1 || OrgID==2) 693 else if (OrgID==1 || OrgID==2)
692 { 694 {
693 mateID_out=43; 695 mateID_out=43;
694 } 696 }
695 697
696 else if (OrgID==110) 698 else if (OrgID==110)
697 { 699 {
698 mateID_out=44; 700 mateID_out=44;
699 } 701 }
700 702
701 else if (OrgID==3 || OrgID==4 || OrgID==7 || 703 else if (OrgID==3 || OrgID==4 || OrgID==7 || OrgID==8 || OrgID==70 || OrgID==71 || OrgID==114 || OrgID==120 || OrgID==121 || OrgID==126 || OrgID==131 || OrgID==134 || OrgID==135 || OrgID == 136)
702 { 704 {
703 mateID_out=45; 705 mateID_out=45;
704 } 706 }
705 707
706 else if (OrgID==115 || OrgID==139) 708 else if (OrgID==115 || OrgID==139)
707 { 709 {
708 mateID_out=46; 710 mateID_out=46;
709 } 711 }
710 712
711 else if (OrgID==100 || OrgID==101 || OrgID== 713 else if (OrgID==100 || OrgID==101 || OrgID==102 || OrgID==103 || OrgID==104 || OrgID==105)
712 { 714 {
713 mateID_out=47; 715 mateID_out=47;
714 } 716 }
715 717
716 else if (OrgID==63 || OrgID==65) 718 else if (OrgID==63 || OrgID==65)
717 { 719 {
718 mateID_out=48; 720 mateID_out=48;
719 } 721 }
720 722
721 else if (OrgID==62 || OrgID==64 || OrgID==11 723 else if (OrgID==62 || OrgID==64 || OrgID==116 || OrgID==117 || OrgID==118 || OrgID==119)
722 { 724 {
723 mateID_out=49; 725 mateID_out=49;
724 } 726 }
725 727
726 else if (OrgID==97 || OrgID==99) 728 else if (OrgID==97 || OrgID==99)
727 { 729 {
728 mateID_out=50; 730 mateID_out=50;
729 } 731 }
730 732
731 else if (OrgID==73 || OrgID==75 || OrgID==77 733 else if (OrgID==73 || OrgID==75 || OrgID==77 || OrgID==79 || OrgID==81 || OrgID==83 || OrgID==85)
732 { 734 {
733 mateID_out=51; 735 mateID_out=51;
734 } 736 }
735 737
736 else if (OrgID==138) 738 else if (OrgID==138)
737 { 739 {
738 mateID_out=52; 740 mateID_out=52;
739 } 741 }
740 742
741 else if (OrgID==0 || OrgID==140) 743 else if (OrgID==0 || OrgID==140)
742 { 744 {
743 mateID_out=0; 745 mateID_out=0;
744 } 746 }
745 747
746 else 748 else
747 { 749 {
748 mateID_out=OrgID; 750 mateID_out=OrgID;
749 } 751 }
750 752
751 G4int nMaterials = 53; 753 G4int nMaterials = 53;
752 if( mateID_out < 0 || mateID_out >= nM 754 if( mateID_out < 0 || mateID_out >= nMaterials ) {
753 G4Exception("GmReadPhantomG4Geometry 755 G4Exception("GmReadPhantomG4Geometry::ReadPhantomData",
754 "Wrong index in phantom 756 "Wrong index in phantom file",
755 FatalException, 757 FatalException,
756 G4String("It should be b 758 G4String("It should be between 0 and "
757 + G4UIcommand::C 759 + G4UIcommand::ConvertToString(nMaterials-1)
758 + ", while it is 760 + ", while it is "
759 + G4UIcommand::C 761 + G4UIcommand::ConvertToString(OrgID)).c_str());
760 762
761 //-------------Store Material IDs and position 763 //-------------Store Material IDs and position/reference number within phantom in vector---------------//
762 } 764 }
763 765
764 fMateIDs[nnew] = mateID_out; 766 fMateIDs[nnew] = mateID_out;
765 767
766 << 768 }
767 } 769 }
768 } 770 }
769 } 771 }
770 772
771 //-----------Define phantom sex (male or femal 773 //-----------Define phantom sex (male or female) to be constructed-------------//
772 void ICRP110PhantomConstruction::SetPhantomSex 774 void ICRP110PhantomConstruction::SetPhantomSex(G4String newSex)
773 { 775 {
774 fSex = newSex; 776 fSex = newSex;
775 777
776 if (fSex == "male") 778 if (fSex == "male")
777 { 779 {
778 G4cout << ">> Male Phantom will be built 780 G4cout << ">> Male Phantom will be built." << G4endl;
779 } 781 }
780 if (fSex == "female") 782 if (fSex == "female")
781 { 783 {
782 G4cout << ">> Female Phantom will be bui 784 G4cout << ">> Female Phantom will be built." << G4endl;
783 } 785 }
784 if ((fSex != "female") && (fSex != "male")) 786 if ((fSex != "female") && (fSex != "male"))
785 G4cout << fSex << " is not defined!" << G4 787 G4cout << fSex << " is not defined!" << G4endl;
786 } 788 }
787 789
788 //-----------Define phantom section to be cons 790 //-----------Define phantom section to be constructed-------------//
789 void ICRP110PhantomConstruction::SetPhantomSec 791 void ICRP110PhantomConstruction::SetPhantomSection(G4String newSection)
790 { 792 {
791 fSection = newSection; 793 fSection = newSection;
792 if (fSection == "head") 794 if (fSection == "head")
793 { 795 {
794 G4cout << ">> Partial Head Phantom will 796 G4cout << ">> Partial Head Phantom will be built." << G4endl;
795 } 797 }
796 if (fSection == "trunk") 798 if (fSection == "trunk")
797 { 799 {
798 G4cout << ">> Partial Trunk Phantom will 800 G4cout << ">> Partial Trunk Phantom will be built." << G4endl;
799 } 801 }
800 if (fSection == "full") 802 if (fSection == "full")
801 { 803 {
802 G4cout << ">> Full/Custom Phantom will b 804 G4cout << ">> Full/Custom Phantom will be built." << G4endl;
803 } 805 }
804 if ((fSection != "head") && (fSection != "tr 806 if ((fSection != "head") && (fSection != "trunk") && (fSection != "full"))
805 G4cout << fSection << " is not defined!" < 807 G4cout << fSection << " is not defined!" << G4endl;
806 808
807 } << 809 }
808