Geant4 Cross Reference

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Geant4/examples/extended/medical/dna/wholeNuclearDNA/wholeNuclearDNA.cc

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  1 //
  2 // ********************************************************************
  3 // * License and Disclaimer                                           *
  4 // *                                                                  *
  5 // * The  Geant4 software  is  copyright of the Copyright Holders  of *
  6 // * the Geant4 Collaboration.  It is provided  under  the terms  and *
  7 // * conditions of the Geant4 Software License,  included in the file *
  8 // * LICENSE and available at  http://cern.ch/geant4/license .  These *
  9 // * include a list of copyright holders.                             *
 10 // *                                                                  *
 11 // * Neither the authors of this software system, nor their employing *
 12 // * institutes,nor the agencies providing financial support for this *
 13 // * work  make  any representation or  warranty, express or implied, *
 14 // * regarding  this  software system or assume any liability for its *
 15 // * use.  Please see the license in the file  LICENSE  and URL above *
 16 // * for the full disclaimer and the limitation of liability.         *
 17 // *                                                                  *
 18 // * This  code  implementation is the result of  the  scientific and *
 19 // * technical work of the GEANT4 collaboration.                      *
 20 // * By using,  copying,  modifying or  distributing the software (or *
 21 // * any work based  on the software)  you  agree  to acknowledge its *
 22 // * use  in  resulting  scientific  publications,  and indicate your *
 23 // * acceptance of all terms of the Geant4 Software license.          *
 24 // ********************************************************************
 25 //
 26 // This example is provided by the Geant4-DNA collaboration
 27 // Any report or published results obtained using the Geant4-DNA software
 28 // shall cite the following Geant4-DNA collaboration publication:
 29 // Med. Phys. 37 (2010) 4692-4708
 30 // The Geant4-DNA web site is available at http://geant4-dna.org
 31 //
 32 /// \file wholeNuclearDNA.cc
 33 /// \brief Implementation of the microdosimetry example
 34 //
 35 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo....
 36 #include "G4RunManagerFactory.hh"
 37 #include "G4Types.hh"
 38 #include "G4UIExecutive.hh"
 39 #include "G4UImanager.hh"
 40 #include "G4UItcsh.hh"
 41 #include "G4UIterminal.hh"
 42 #include "G4VisExecutive.hh"
 43 #ifdef G4UI_USE_QT
 44 #  include "G4UIQt.hh"
 45 #endif
 46 
 47 #include "ActionInitialization.hh"
 48 #include "CommandLineParser.hh"
 49 #include "DetectorConstruction.hh"
 50 #include "PhysicsList.hh"
 51 
 52 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
 53 
 54 using namespace G4DNAPARSER;
 55 CommandLineParser* parser(0);
 56 
 57 void Parse(int& argc, char** argv);
 58 
 59 int main(int argc, char** argv)
 60 {
 61   //////////
 62   // Parse options given in commandLine
 63   //
 64   Parse(argc, argv);
 65 
 66   //////////
 67   // Construct the run manager according to whether MT is activated or not
 68   //
 69   Command* commandLine(0);
 70 
 71   auto* runManager = G4RunManagerFactory::CreateRunManager();
 72   if ((commandLine = parser->GetCommandIfActive("-mt"))) {
 73     int nThreads = 2;
 74     if (commandLine->GetOption() == "NMAX") {
 75       nThreads = G4Threading::G4GetNumberOfCores();
 76     }
 77     else {
 78       nThreads = G4UIcommand::ConvertToInt(commandLine->GetOption());
 79     }
 80 
 81     runManager->SetNumberOfThreads(nThreads);
 82 
 83     G4cout << "===== WholeNuclearDNA is started with " << runManager->GetNumberOfThreads()
 84            << " threads =====" << G4endl;
 85   }
 86 
 87   // Set mandatory user initialization classes
 88   DetectorConstruction* detector = new DetectorConstruction;
 89   runManager->SetUserInitialization(detector);
 90   runManager->SetUserInitialization(new PhysicsList);
 91   runManager->SetUserInitialization(new ActionInitialization());
 92 
 93   // Initialize G4 kernel
 94   runManager->Initialize();
 95 
 96   // Initialize visualization
 97   G4VisManager* visManager = new G4VisExecutive;
 98   // G4VisExecutive can take a verbosity argument - see /vis/verbose guidance.
 99   // G4VisManager* visManager = new G4VisExecutive("Quiet");
100   visManager->Initialize();
101 
102   // Get the pointer to the User Interface manager
103   G4UImanager* UImanager = G4UImanager::GetUIpointer();
104   G4UIExecutive* ui(0);
105 
106   // interactive mode : define UI session
107   if ((commandLine = parser->GetCommandIfActive("-gui"))) {
108     ui = new G4UIExecutive(argc, argv, commandLine->GetOption());
109 
110     if (ui->IsGUI()) UImanager->ApplyCommand("/control/execute gui.mac");
111 
112     if (parser->GetCommandIfActive("-novis") == 0)
113     // visualization is used by default
114     {
115       if ((commandLine = parser->GetCommandIfActive("-vis")))
116       // select a visualization driver if needed (e.g. HepFile)
117       {
118         UImanager->ApplyCommand(G4String("/vis/open ") + commandLine->GetOption());
119       }
120       else
121       // by default OGL is used
122       {
123         UImanager->ApplyCommand("/vis/open OGL 800x600-0+0");
124       }
125       UImanager->ApplyCommand("/control/execute vis.mac");
126     }
127   }
128   else
129   // to be use visualization file (= store the visualization into
130   // an external file:
131   // ASCIITree ;  DAWNFILE ; HepRepFile ; VRML(1,2)FILE ; gMocrenFile ...
132   {
133     if ((commandLine = parser->GetCommandIfActive("-vis"))) {
134       UImanager->ApplyCommand(G4String("/vis/open ") + commandLine->GetOption());
135       UImanager->ApplyCommand("/control/execute vis.mac");
136     }
137   }
138 
139   if ((commandLine = parser->GetCommandIfActive("-mac"))) {
140     G4String command = "/control/execute ";
141     UImanager->ApplyCommand(command + commandLine->GetOption());
142   }
143   else {
144     UImanager->ApplyCommand("/control/execute wholeNuclearDNA.in");
145   }
146 
147   if ((commandLine = parser->GetCommandIfActive("-gui"))) {
148 #ifdef G4UI_USE_QT
149     G4UIQt* UIQt = static_cast<G4UIQt*>(UImanager->GetG4UIWindow());
150     if (UIQt) {
151       UIQt->AddViewerTabFromFile("README", "README from " + G4String(argv[0]));
152     }
153 #endif
154     ui->SessionStart();
155     delete ui;
156   }
157 
158   delete visManager;
159   delete runManager;
160 
161   return 0;
162 }
163 
164 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
165 
166 void GetNameAndPathOfExecutable(char** argv, G4String& executable, G4String& path)
167 {
168   // Get the last position of '/'
169   std::string aux(argv[0]);
170 
171   // get '/' or '\\' depending on unix/mac or windows.
172 #if defined(_WIN32) || defined(WIN32)
173   int pos = aux.rfind('\\');
174 #else
175   int pos = aux.rfind('/');
176 #endif
177 
178   // Get the path and the name
179   path = aux.substr(0, pos + 1);
180   executable = aux.substr(pos + 1);
181 }
182 
183 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
184 
185 void Parse(int& argc, char** argv)
186 {
187   //////////
188   // Parse options given in commandLine
189   //
190   parser = CommandLineParser::GetParser();
191 
192   parser->AddCommand("-gui", Command::OptionNotCompulsory,
193                      "Select geant4 UI or just launch a geant4 terminal session", "qt");
194 
195   parser->AddCommand("-mac", Command::WithOption, "Give a mac file to execute", "macFile.mac");
196 
197   // You cann your own command, as for instance:
198   //  parser->AddCommand("-seed",
199   //                     Command::WithOption,
200   //                     "Give a seed value in argument to be tested", "seed");
201   // it is then up to you to manage this option
202 
203   parser->AddCommand("-mt", Command::WithOption, "Launch in MT mode (events computed in parallel)",
204                      "2");
205 
206   parser->AddCommand("-vis", Command::WithOption, "Select a visualization driver",
207                      "OGL 600x600-0+0");
208 
209   parser->AddCommand("-novis", Command::WithoutOption, "Deactivate visualization when using GUI");
210 
211   G4String exec;
212   G4String path;
213   GetNameAndPathOfExecutable(argv, exec, path);
214 
215   parser->AddCommand("-out", Command::OptionNotCompulsory, "Output files (ROOT is used by default)",
216                      exec);
217 
218   //////////
219   // If -h or --help is given in option : print help and exit
220   //
221   if (parser->Parse(argc, argv) != 0)  // help is being printed
222   {
223     // if you are using ROOT, create a TApplication in this condition in order
224     // to print the help from ROOT as well
225     CommandLineParser::DeleteInstance();
226     std::exit(0);
227   }
228 
229   ///////////
230   // Kill application if wrong argument in command line
231   //
232   if (parser->CheckIfNotHandledOptionsExists(argc, argv)) {
233     // if you are using ROOT, you should initialise your TApplication
234     // before this condition
235     abort();
236   }
237 }
238