Geant4 Cross Reference

Cross-Referencing   Geant4
Geant4/examples/extended/medical/dna/neuron/src/ActionInitialization.cc

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  1 //
  2 // ********************************************************************
  3 // * License and Disclaimer                                           *
  4 // *                                                                  *
  5 // * The  Geant4 software  is  copyright of the Copyright Holders  of *
  6 // * the Geant4 Collaboration.  It is provided  under  the terms  and *
  7 // * conditions of the Geant4 Software License,  included in the file *
  8 // * LICENSE and available at  http://cern.ch/geant4/license .  These *
  9 // * include a list of copyright holders.                             *
 10 // *                                                                  *
 11 // * Neither the authors of this software system, nor their employing *
 12 // * institutes,nor the agencies providing financial support for this *
 13 // * work  make  any representation or  warranty, express or implied, *
 14 // * regarding  this  software system or assume any liability for its *
 15 // * use.  Please see the license in the file  LICENSE  and URL above *
 16 // * for the full disclaimer and the limitation of liability.         *
 17 // *                                                                  *
 18 // * This  code  implementation is the result of  the  scientific and *
 19 // * technical work of the GEANT4 collaboration.                      *
 20 // * By using,  copying,  modifying or  distributing the software (or *
 21 // * any work based  on the software)  you  agree  to acknowledge its *
 22 // * use  in  resulting  scientific  publications,  and indicate your *
 23 // * acceptance of all terms of the Geant4 Software license.          *
 24 // ********************************************************************
 25 //
 26 // This example is provided by the Geant4-DNA collaboration
 27 // Any report or published results obtained using the Geant4-DNA software
 28 // shall cite the following Geant4-DNA collaboration publication:
 29 // Med. Phys. 37 (2010) 4692-4708
 30 // and papers
 31 // M. Batmunkh et al. J Radiat Res Appl Sci 8 (2015) 498-507
 32 // O. Belov et al. Physica Medica 32 (2016) 1510-1520
 33 // The Geant4-DNA web site is available at http://geant4-dna.org
 34 //
 35 // -------------------------------------------------------------------
 36 // November 2016
 37 // -------------------------------------------------------------------
 38 //
 39 /// \file ActionInitialization.cc
 40 /// \brief Implementation of the ActionInitialization class
 41 
 42 #include "ActionInitialization.hh"
 43 
 44 #include "DetectorConstruction.hh"
 45 #include "EventAction.hh"
 46 #include "PrimaryGeneratorAction.hh"
 47 #include "RunAction.hh"
 48 #include "SteppingAction.hh"
 49 #include "TrackingAction.hh"
 50 
 51 #include "G4RunManager.hh"
 52 // added for chemistry
 53 #include "DetectorConstruction.hh"
 54 #include "ITSteppingAction.hh"
 55 #include "ITTrackingAction.hh"
 56 #include "ITTrackingInteractivity.hh"
 57 #include "StackingAction.hh"
 58 #include "TimeStepAction.hh"
 59 
 60 #include "G4DNAChemistryManager.hh"
 61 #include "G4Scheduler.hh"
 62 #include "G4SystemOfUnits.hh"
 63 #include "G4Threading.hh"
 64 #include "G4UnitsTable.hh"
 65 
 66 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
 67 
 68 ActionInitialization::ActionInitialization(DetectorConstruction* detector)
 69   : G4VUserActionInitialization(), fDetector(detector)
 70 {}
 71 
 72 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
 73 
 74 ActionInitialization::~ActionInitialization() {}
 75 
 76 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
 77 
 78 void ActionInitialization::BuildForMaster() const
 79 {
 80   // In MT mode, to be clearer, the RunAction class for the master thread might
 81   // be different than the one used for the workers.
 82   // This RunAction will be called before and after starting the
 83   // workers.
 84   // For more details, please refer to :
 85   // https://twiki.cern.ch/twiki/bin/view/Geant4/Geant4MTForApplicationDevelopers
 86   //
 87 
 88   SetUserAction(new RunAction(fDetector, 0));
 89 }
 90 
 91 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
 92 
 93 void ActionInitialization::Build() const
 94 {
 95   // G4cout << "Build for = "
 96   // << G4RunManager::GetRunManager()->GetRunManagerType()
 97   // << G4endl;
 98 
 99   PrimaryGeneratorAction* kinematics = new PrimaryGeneratorAction();
100   SetUserAction(kinematics);
101 
102   TrackingAction* trackingAction = new TrackingAction();
103   SetUserAction(trackingAction);
104 
105   RunAction* runAction = new RunAction(fDetector, kinematics);
106   SetUserAction(runAction);
107 
108   SetUserAction(new SteppingAction(runAction));
109   SetUserAction(new EventAction(runAction));
110   // added
111   SetUserAction(new StackingAction());
112 
113   // chemistry part
114   if (G4DNAChemistryManager::IsActivated()) {
115     G4Scheduler::Instance()->SetUserAction(new TimeStepAction());
116 
117     // Uncomment and set to stop chemistry stage after:
118     // ...given number of time steps
119     // G4Scheduler::Instance()->SetMaxNbSteps(1000);
120 
121     // ...OR reaching this time
122     G4Scheduler::Instance()->SetEndTime(0.01 * nanosecond);  // default: 10 ps
123 
124     G4Scheduler::Instance()->SetVerbose(1);  // default: 1-print reactions;
125 
126     ITTrackingInteractivity* itInteractivity = new ITTrackingInteractivity();
127     itInteractivity->SetUserAction(new ITSteppingAction);
128     itInteractivity->SetUserAction(new ITTrackingAction);
129     G4Scheduler::Instance()->SetInteractivity(itInteractivity);
130   }
131   /*
132     // To output the pre-chemical stage
133     //
134     G4String fileName ("output");
135 
136     if(G4RunManager::GetRunManager()->GetRunManagerType() ==
137         G4RunManager::sequentialRM)
138     {
139       // write initial situation at 1 picosecond
140       G4DNAChemistryManager::Instance()->WriteInto(fileName + ".txt");
141     }
142     else
143     {
144       G4int id = G4Threading::G4GetThreadId();
145 
146       G4String fileName_mt = fileName;
147       fileName_mt += G4UIcommand::ConvertToString(id);
148       fileName_mt += ".txt";
149 
150       G4cout << "chosen file name : " << fileName_mt << G4endl;
151 
152       G4DNAChemistryManager::Instance()->WriteInto(fileName_mt);
153     }
154   */
155 }
156 
157 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
158