Geant4 Cross Reference

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Geant4/examples/extended/medical/dna/dnadamage2/src/Run.cc

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  1 //
  2 // ********************************************************************
  3 // * License and Disclaimer                                           *
  4 // *                                                                  *
  5 // * The  Geant4 software  is  copyright of the Copyright Holders  of *
  6 // * the Geant4 Collaboration.  It is provided  under  the terms  and *
  7 // * conditions of the Geant4 Software License,  included in the file *
  8 // * LICENSE and available at  http://cern.ch/geant4/license .  These *
  9 // * include a list of copyright holders.                             *
 10 // *                                                                  *
 11 // * Neither the authors of this software system, nor their employing *
 12 // * institutes,nor the agencies providing financial support for this *
 13 // * work  make  any representation or  warranty, express or implied, *
 14 // * regarding  this  software system or assume any liability for its *
 15 // * use.  Please see the license in the file  LICENSE  and URL above *
 16 // * for the full disclaimer and the limitation of liability.         *
 17 // *                                                                  *
 18 // * This  code  implementation is the result of  the  scientific and *
 19 // * technical work of the GEANT4 collaboration.                      *
 20 // * By using,  copying,  modifying or  distributing the software (or *
 21 // * any work based  on the software)  you  agree  to acknowledge its *
 22 // * use  in  resulting  scientific  publications,  and indicate your *
 23 // * acceptance of all terms of the Geant4 Software license.          *
 24 // ********************************************************************
 25 //
 26 // This example is provided by the Geant4-DNA collaboration
 27 // dnadamage3 example is derived from the chem6 example
 28 // chem6 example authors: W. G. Shin and S. Incerti (CENBG, France)
 29 //
 30 // Any report or published results obtained using the Geant4-DNA software
 31 // shall cite the following Geant4-DNA collaboration publication:
 32 // J. Appl. Phys. 125 (2019) 104301
 33 // Med. Phys. 45 (2018) e722-e739
 34 // J. Comput. Phys. 274 (2014) 841-882
 35 // Med. Phys. 37 (2010) 4692-4708
 36 // Int. J. Model. Simul. Sci. Comput. 1 (2010) 157-178
 37 // The Geant4-DNA web site is available at http://geant4-dna.org
 38 //
 39 // Authors: J. Naoki D. Kondo (UCSF, US)
 40 //          J. Ramos-Mendez and B. Faddegon (UCSF, US)
 41 //
 42 /// \file Run.cc
 43 /// \brief Implementation of the Run class
 44 
 45 #include "Run.hh"
 46 
 47 #include "RunAction.hh"
 48 #include "ScoreSpecies.hh"
 49 
 50 #include "G4Event.hh"
 51 #include "G4HCofThisEvent.hh"
 52 #include "G4RunManager.hh"
 53 #include "G4SDManager.hh"
 54 #include "G4SystemOfUnits.hh"
 55 #include "G4THitsMap.hh"
 56 #include "G4VSensitiveDetector.hh"
 57 
 58 #include <map>
 59 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo.....
 60 
 61 Run::Run() : G4Run()
 62 {
 63   G4MultiFunctionalDetector* mfdet = dynamic_cast<G4MultiFunctionalDetector*>(
 64     G4SDManager::GetSDMpointer()->FindSensitiveDetector("mfDetector"));
 65   G4int CollectionIDspecies = G4SDManager::GetSDMpointer()->GetCollectionID("mfDetector/Species");
 66   G4int CollectionIDLET = G4SDManager::GetSDMpointer()->GetCollectionID("mfDetector/LET");
 67   G4int CollectionSB = G4SDManager::GetSDMpointer()->GetCollectionID("mfDetector/StrandBreaks");
 68 
 69   fTotalLET = new G4THitsMap<G4double>("mfDetector", "LET");
 70   fScorerRun = mfdet->GetPrimitive(CollectionIDspecies);
 71   fLETScorerRun = mfdet->GetPrimitive(CollectionIDLET);
 72   fStrandBreakRun = mfdet->GetPrimitive(CollectionSB);
 73 }
 74 
 75 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo.....
 76 
 77 void Run::RecordEvent(const G4Event* event)
 78 {
 79   if (event->IsAborted()) return;
 80 
 81   G4int CollectionID = G4SDManager::GetSDMpointer()->GetCollectionID("mfDetector/Species");
 82 
 83   G4int CollectionIDLET = G4SDManager::GetSDMpointer()->GetCollectionID("mfDetector/LET");
 84 
 85   // Hits collections
 86   //
 87   G4HCofThisEvent* HCE = event->GetHCofThisEvent();
 88   if (!HCE) return;
 89 
 90   G4THitsMap<G4double>* evtMap = static_cast<G4THitsMap<G4double>*>(HCE->GetHC(CollectionID));
 91 
 92   G4THitsMap<G4double>* evtLET = static_cast<G4THitsMap<G4double>*>(HCE->GetHC(CollectionIDLET));
 93 
 94   G4int nOfMap = evtLET->entries();
 95 
 96   G4int nOftotal = fTotalLET->entries();
 97 
 98   for (G4int i = 0; i < nOfMap; i++) {
 99     G4double* LET = (*evtLET)[i];
100     if (!LET) continue;
101     fTotalLET->add(nOftotal + i, *LET);
102   }
103 
104   std::map<G4int, G4double*>::iterator itr;
105 
106   for (itr = evtMap->GetMap()->begin(); itr != evtMap->GetMap()->end(); itr++) {
107     G4double edep = *(itr->second);
108     fSumEne += edep;
109   }
110 
111   G4Run::RecordEvent(event);
112 }
113 
114 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo.....
115 
116 void Run::Merge(const G4Run* aRun)
117 {
118   if (aRun == this) {
119     return;
120   }
121 
122   const Run* localRun = static_cast<const Run*>(aRun);
123   fSumEne += localRun->fSumEne;
124 
125   G4int nOfMaster = fTotalLET->entries();
126   G4int nOfLocal = localRun->fTotalLET->entries();
127   for (G4int i = 0; i < nOfLocal; i++) {
128     G4double* LET = (*localRun->fTotalLET)[i];
129     if (!LET) continue;
130     fTotalLET->add(nOfMaster + i, *LET);
131   }
132 
133   ScoreSpecies* masterSpeciesScorer = dynamic_cast<ScoreSpecies*>(this->fScorerRun);
134 
135   ScoreSpecies* localSpeciesScorer = dynamic_cast<ScoreSpecies*>(localRun->fScorerRun);
136 
137   masterSpeciesScorer->AbsorbResultsFromWorkerScorer(localSpeciesScorer);
138 
139   ScoreStrandBreaks* masterSBScorer = dynamic_cast<ScoreStrandBreaks*>(this->fStrandBreakRun);
140 
141   ScoreStrandBreaks* localSBScorer = dynamic_cast<ScoreStrandBreaks*>(localRun->fStrandBreakRun);
142 
143   masterSBScorer->AbsorbResultsFromWorkerScorer(localSBScorer);
144 
145   G4Run::Merge(aRun);
146 }
147 
148 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo.....
149