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1 //
2 // ********************************************************************
3 // * License and Disclaimer *
4 // * *
5 // * The Geant4 software is copyright of the Copyright Holders of *
6 // * the Geant4 Collaboration. It is provided under the terms and *
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14 // * regarding this software system or assume any liability for its *
15 // * use. Please see the license in the file LICENSE and URL above *
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17 // * *
18 // * This code implementation is the result of the scientific and *
19 // * technical work of the GEANT4 collaboration. *
20 // * By using, copying, modifying or distributing the software (or *
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22 // * use in resulting scientific publications, and indicate your *
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24 // ********************************************************************
25 //
26 // This example is provided by the Geant4-DNA collaboration
27 // Any report or published results obtained using the Geant4-DNA software
28 // shall cite the following Geant4-DNA collaboration publication:
29 // Med. Phys. 37 (2010) 4692-4708
30 // J. Comput. Phys. 274 (2014) 841-882
31 // The Geant4-DNA web site is available at http://geant4-dna.org
32 //
33 //
34 #ifndef CHEM4_ScoreSpecies_h
35 #define CHEM4_ScoreSpecies_h 1
36
37 #include "G4THitsMap.hh"
38 #include "G4VPrimitiveScorer.hh"
39
40 #include <set>
41
42 class G4VAnalysisManager;
43 class G4MolecularConfiguration;
44
45 // #define _ScoreSpecies_FOR_ALL_EVENTS
46
47 /** \file ScoreSpecies.hh*/
48
49 // Description:
50 // This is a primitive scorer class for scoring the radiolitic species
51 // produced after irradiation in a water volume
52 //
53 // Created: 2015-10-27 by M. Karamitros,
54 // modified: 2016-03-16 by P. Piersimoni
55
56 class ScoreSpecies : public G4VPrimitiveScorer
57 {
58 public:
59 ScoreSpecies(G4String name, G4int depth = 0);
60
61 virtual ~ScoreSpecies();
62
63 /** Add a time at which the number of species should be recorded.
64 Default times are set up to 1 microsecond.*/
65 inline void AddTimeToRecord(double time) { fTimeToRecord.insert(time); }
66
67 /** Remove all times to record, must be reset by user.*/
68 inline void ClearTimeToRecord() { fTimeToRecord.clear(); }
69
70 /** Get number of recorded events*/
71 inline int GetNumberOfRecordedEvents() const { return fNEvent; }
72
73 /** Write results to an text file*/
74 void ASCII();
75
76 /** Write results to whatever chosen file format*/
77 void WriteWithAnalysisManager(G4VAnalysisManager*);
78
79 struct SpeciesInfo
80 {
81 SpeciesInfo()
82 {
83 fNumber = 0;
84 fG = 0.;
85 fG2 = 0.;
86 }
87 SpeciesInfo(const SpeciesInfo& right) // Species A(B);
88 {
89 fNumber = right.fNumber;
90 fG = right.fG;
91 fG2 = right.fG2;
92 }
93 SpeciesInfo& operator=(const SpeciesInfo& right) // A = B
94 {
95 if (&right == this) return *this;
96 fNumber = right.fNumber;
97 fG = right.fG;
98 fG2 = right.fG2;
99 return *this;
100 }
101 int fNumber;
102 double fG;
103 double fG2;
104 };
105
106 #ifdef _ScoreSpecies_FOR_ALL_EVENTS
107 struct SpeciesInfoSOA
108 {
109 SpeciesInfoSOA()
110 {
111 // fNumber = 0;
112 // fG = 0.;
113 // fG2 = 0.;
114 }
115 SpeciesInfoSOA(const SpeciesInfoSOA& right) // Species A(B);
116 {
117 fNumber = right.fNumber;
118 fG = right.fG;
119 fG2 = right.fG2;
120 fEventID = right.fEventID;
121 }
122 SpeciesInfoSOA& operator=(const SpeciesInfoSOA& right) // A = B
123 {
124 if (&right == this) return *this;
125 fNumber = right.fNumber;
126 fG = right.fG;
127 fG2 = right.fG2;
128 fEventID = right.fEventID;
129 return *this;
130 }
131 std::vector<int> fNumber;
132 std::vector<double> fG;
133 std::vector<double> fG2;
134 std::vector<int> fEventID;
135 };
136 #endif
137
138 private:
139 typedef const G4MolecularConfiguration Species;
140 typedef std::map<Species*, SpeciesInfo> InnerSpeciesMap;
141 typedef std::map<double, InnerSpeciesMap> SpeciesMap;
142 SpeciesMap fSpeciesInfoPerTime;
143
144 #ifdef _ScoreSpecies_FOR_ALL_EVENTS
145 typedef std::map<Species, SpeciesInfoSOA> InnerSpeciesMapPerEvent;
146 typedef std::map<double, InnerSpeciesMapPerEvent> SpeciesMapPerEvent;
147 SpeciesMapPerEvent fSpeciesInfoPerEvent;
148 #endif
149
150 std::set<G4double> fTimeToRecord;
151
152 int fNEvent; // number of processed events
153 double fEdep; // total energy deposition
154 G4String fOutputType; // output type
155
156 protected:
157 virtual G4bool ProcessHits(G4Step*, G4TouchableHistory*);
158
159 public:
160 virtual void Initialize(G4HCofThisEvent*);
161 virtual void EndOfEvent(G4HCofThisEvent*);
162 virtual void DrawAll();
163 virtual void PrintAll();
164 /** Method used in multithreading mode in order to merge
165 the results*/
166 virtual void AbsorbResultsFromWorkerScorer(G4VPrimitiveScorer*);
167 virtual void OutputAndClear();
168
169 SpeciesMap GetSpeciesInfo() { return fSpeciesInfoPerTime; }
170
171 private:
172 G4int fHCID;
173 G4THitsMap<G4double>* fEvtMap;
174 };
175 #endif
176