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25 //
26 //
27 // MoleculeInserter.cc
28 //
29 // Authors: J. Naoki D. Kondo (UCSF, US)
30 // J. Ramos-Mendez and B. Faddegon (UCSF, US)
31 //
32 /// \file MoleculeInserter.cc
33 /// \brief Implementation of the DNA chemical species inserter for IRT
34
35 #include "MoleculeInserter.hh"
36
37 #include "G4ITTrackHolder.hh"
38 #include "G4MolecularConfiguration.hh"
39 #include "G4Molecule.hh"
40 #include "G4MoleculeTable.hh"
41 #include "G4PhysicalVolumeStore.hh"
42 #include "G4Track.hh"
43 #include "G4VPhysicalVolume.hh"
44 #include "Randomize.hh"
45
46 #include <cassert>
47
48 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo.....
49
50 MoleculeInserter::MoleculeInserter() : fSaveTrackID(false) {}
51
52 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo.....
53
54 MoleculeInserter::MoleculeInserter(G4bool save) : fSaveTrackID(save) {}
55
56 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo.....
57
58 void MoleculeShoot::Shoot(MoleculeInserter* gun)
59 {
60 for (int i = 0; i < fNumber; ++i) {
61 G4MolecularConfiguration* conf = G4MoleculeTable::Instance()->GetConfiguration(fMoleculeName);
62
63 if (conf == 0) {
64 G4String msg = "Chemistry Error: Molecule " + fMoleculeName + " don't exists.";
65 G4Exception("MoleculeInserter::Shoot()", "Invalid_Value", FatalException, msg);
66 }
67
68 G4Molecule* molecule = new G4Molecule(conf);
69 gun->PushToChemistry(molecule, fTime, fPosition);
70 }
71 }
72
73 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo.....
74
75 void MoleculeInserter::CreateMolecule(G4Molecule* molecule, G4double time, G4ThreeVector pos)
76 {
77 G4Track* MolTrack = molecule->BuildTrack(time, pos);
78 PushTrack(MolTrack);
79 }
80
81 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo.....
82
83 void MoleculeInserter::CreateMolecule(G4String molecule, G4double time, G4ThreeVector pos)
84 {
85 G4MolecularConfiguration* conf = G4MoleculeTable::Instance()->GetConfiguration(molecule);
86
87 if (conf == 0) {
88 G4String msg = "Chemistry Error: Molecule " + molecule + " don't exists.";
89 G4Exception("MoleculeInserter::CreateMolecule()", "Invalid_Value", FatalException, msg);
90 }
91
92 G4Molecule* gmolecule = new G4Molecule(conf);
93 G4Track* MolTrack = gmolecule->BuildTrack(time, pos);
94 PushTrack(MolTrack);
95 }
96
97 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo.....
98
99 void MoleculeInserter::PushToChemistry(G4Molecule* mol, G4double time, G4ThreeVector position)
100 {
101 G4Track* MolTrack = mol->BuildTrack(time, position);
102 PushTrack(MolTrack);
103
104 if (fSaveTrackID) {
105 fInsertedTracks.push_back(MolTrack);
106 }
107 }
108
109 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo.....
110
111 void MoleculeInserter::DefineTracks()
112 {
113 if (fInsertedTracks.size() != 0) {
114 fInsertedTracks.clear();
115 }
116
117 for (size_t i = 0; i < fShoots.size(); i++) {
118 fShoots[i].Shoot(this);
119 }
120 }
121
122 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo.....
123
124 void MoleculeInserter::AddMolecule(const G4String& name, const G4ThreeVector& position, double time)
125 {
126 MoleculeShoot shoot;
127 shoot.fMoleculeName = name;
128 shoot.fPosition = position;
129 shoot.fTime = time;
130 fShoots.push_back(shoot);
131 }
132
133 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo.....
134
135 MoleculeShoot::MoleculeShoot()
136 {
137 fMoleculeName = "";
138 fTime = 0;
139 fNumber = 1;
140 }
141
142 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo.....
143
144 void MoleculeInserter::Clean()
145 {
146 if (fShoots.size() != 0) fShoots.clear();
147
148 if (fInsertedTracks.size() != 0) fInsertedTracks.clear();
149 }
150
151 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo.....
152