| Geant4 Cross Reference |
1 //
2 // ********************************************************************
3 // * License and Disclaimer *
4 // * *
5 // * The Geant4 software is copyright of the Copyright Holders of *
6 // * the Geant4 Collaboration. It is provided under the terms and *
7 // * conditions of the Geant4 Software License, included in the file *
8 // * LICENSE and available at http://cern.ch/geant4/license . These *
9 // * include a list of copyright holders. *
10 // * *
11 // * Neither the authors of this software system, nor their employing *
12 // * institutes,nor the agencies providing financial support for this *
13 // * work make any representation or warranty, express or implied, *
14 // * regarding this software system or assume any liability for its *
15 // * use. Please see the license in the file LICENSE and URL above *
16 // * for the full disclaimer and the limitation of liability. *
17 // * *
18 // * This code implementation is the result of the scientific and *
19 // * technical work of the GEANT4 collaboration. *
20 // * By using, copying, modifying or distributing the software (or *
21 // * any work based on the software) you agree to acknowledge its *
22 // * use in resulting scientific publications, and indicate your *
23 // * acceptance of all terms of the Geant4 Software license. *
24 // ********************************************************************
25 //
26 // This class was made using G4MoleculeGun as a base
27 // G4MoleculeGun Author: Mathieu Karamitros
28 //
29 // The code is developed in the framework of the ESA AO7146
30 //
31 // We would be very happy hearing from you, send us your feedback! :)
32 //
33 // In order for Geant4-DNA to be maintained and still open-source,
34 // article citations are crucial.
35 // If you use Geant4-DNA chemistry and you publish papers about your software,
36 // in addition to the general paper on Geant4-DNA:
37 //
38 // Int. J. Model. Simul. Sci. Comput. 1 (2010) 157–178
39 //
40 // we would be very happy if you could please also cite the following
41 // reference papers on chemistry:
42 //
43 // Authors: J. Naoki D. Kondo (UCSF, US)
44 // J. Ramos-Mendez and B. Faddegon (UCSF, US)
45 //
46 // J. Comput. Phys. 274 (2014) 841-882
47 // Prog. Nucl. Sci. Tec. 2 (2011) 503-508
48 //
49 /// \file MoleculeInserter.hh
50 /// \brief Definition of the DNA chemical species inserter for IRT
51
52 #ifndef DNADAMAGE2_moleculeinserter_h
53 #define DNADAMAGE2_moleculeinserter_h 1
54
55 #include "G4ITGun.hh"
56 #include "G4ThreeVector.hh"
57 #include "globals.hh"
58
59 #include <G4memory.hh>
60 #include <map>
61 #include <vector>
62
63 class G4Track;
64 class MoleculeInserter;
65 class G4Molecule;
66
67 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
68
69 class MoleculeShoot
70 {
71 public:
72 MoleculeShoot();
73 ~MoleculeShoot() = default;
74 void Shoot(MoleculeInserter*);
75
76 public:
77 G4int fNumber = 0;
78 G4String fMoleculeName = "None";
79 G4double fTime = 1;
80 G4ThreeVector fPosition = G4ThreeVector();
81 };
82
83 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
84
85 class MoleculeInserter : public G4ITGun
86 {
87 public:
88 MoleculeInserter();
89 MoleculeInserter(G4bool);
90 ~MoleculeInserter() = default;
91 void DefineTracks() override;
92 void AddMolecule(const G4String& moleculeName, const G4ThreeVector& position, double time = 0);
93 void PushToChemistry(G4Molecule*, G4double, G4ThreeVector);
94 void CreateMolecule(G4Molecule*, G4double, G4ThreeVector);
95 void CreateMolecule(G4String, G4double, G4ThreeVector);
96 void Clean();
97
98 std::vector<G4Track*> const GetInsertedTracks() { return fInsertedTracks; }
99
100 private:
101 G4bool fSaveTrackID = true;
102 std::vector<G4Track*> fInsertedTracks;
103
104 protected:
105 std::vector<MoleculeShoot> fShoots;
106 };
107
108 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
109
110 #endif
111