Geant4 Cross Reference

Cross-Referencing   Geant4
Geant4/examples/extended/medical/dna/clustering/clustering.cc

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  1 //
  2 // ********************************************************************
  3 // * License and Disclaimer                                           *
  4 // *                                                                  *
  5 // * The  Geant4 software  is  copyright of the Copyright Holders  of *
  6 // * the Geant4 Collaboration.  It is provided  under  the terms  and *
  7 // * conditions of the Geant4 Software License,  included in the file *
  8 // * LICENSE and available at  http://cern.ch/geant4/license .  These *
  9 // * include a list of copyright holders.                             *
 10 // *                                                                  *
 11 // * Neither the authors of this software system, nor their employing *
 12 // * institutes,nor the agencies providing financial support for this *
 13 // * work  make  any representation or  warranty, express or implied, *
 14 // * regarding  this  software system or assume any liability for its *
 15 // * use.  Please see the license in the file  LICENSE  and URL above *
 16 // * for the full disclaimer and the limitation of liability.         *
 17 // *                                                                  *
 18 // * This  code  implementation is the result of  the  scientific and *
 19 // * technical work of the GEANT4 collaboration.                      *
 20 // * By using,  copying,  modifying or  distributing the software (or *
 21 // * any work based  on the software)  you  agree  to acknowledge its *
 22 // * use  in  resulting  scientific  publications,  and indicate your *
 23 // * acceptance of all terms of the Geant4 Software license.          *
 24 // ********************************************************************
 25 //
 26 // This example is provided by the Geant4-DNA collaboration
 27 // Any report or published results obtained using the Geant4-DNA software
 28 // shall cite the following Geant4-DNA collaboration publication:
 29 // Med. Phys. 37 (2010) 4692-4708
 30 // The Geant4-DNA web site is available at http://geant4-dna.org
 31 //
 32 //
 33 /// \file clustering.cc
 34 /// \brief clustering example
 35 
 36 #include "ActionInitialization.hh"
 37 #include "CommandLineParser.hh"
 38 #include "DetectorConstruction.hh"
 39 #include "PhysicsList.hh"
 40 
 41 #include "G4DNAChemistryManager.hh"
 42 #include "G4RunManagerFactory.hh"
 43 #include "G4UIExecutive.hh"
 44 #include "G4UImanager.hh"
 45 #include "G4VisExecutive.hh"
 46 
 47 using namespace G4DNAPARSER;
 48 CommandLineParser* parser(0);
 49 
 50 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
 51 
 52 void Parse(int& argc, char** argv);
 53 
 54 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
 55 
 56 int main(int argc, char** argv)
 57 {
 58   //////////
 59   // Parse options given in commandLine
 60   //
 61   Parse(argc, argv);
 62 
 63   //////////
 64   // Construct the run manager according to whether MT is activated or not
 65   //
 66   Command* commandLine(0);
 67 
 68   auto* runManager = G4RunManagerFactory::CreateRunManager();
 69   if ((commandLine = parser->GetCommandIfActive("-mt"))) {
 70     int nThreads = 2;
 71     if (commandLine->GetOption() == "NMAX") {
 72       nThreads = G4Threading::G4GetNumberOfCores();
 73     }
 74     else {
 75       nThreads = G4UIcommand::ConvertToInt(commandLine->GetOption());
 76     }
 77     runManager->SetNumberOfThreads(nThreads);
 78 
 79     G4cout << "===== clustering is started with " << runManager->GetNumberOfThreads()
 80            << " threads =====" << G4endl;
 81   }
 82 
 83   //////////
 84   // Set mandatory user initialization classes
 85   //
 86   DetectorConstruction* detector = new DetectorConstruction;
 87   runManager->SetUserInitialization(new PhysicsList);
 88   runManager->SetUserInitialization(detector);
 89   runManager->SetUserInitialization(new ActionInitialization());
 90 
 91   // Initialize G4 kernel
 92   runManager->Initialize();
 93 
 94   // Initialize visualization
 95   G4VisManager* visManager = new G4VisExecutive;
 96   visManager->Initialize();
 97 
 98   // Get the pointer to the User Interface manager
 99   G4UImanager* UImanager = G4UImanager::GetUIpointer();
100   G4UIExecutive* ui(0);
101 
102   // interactive mode : define UI session
103   if ((commandLine = parser->GetCommandIfActive("-gui"))) {
104     ui = new G4UIExecutive(argc, argv, commandLine->GetOption());
105 
106     if (ui->IsGUI()) UImanager->ApplyCommand("/control/execute gui.mac");
107 
108     if (parser->GetCommandIfActive("-novis") == 0)
109     // visualization is used by default
110     {
111       if ((commandLine = parser->GetCommandIfActive("-vis")))
112       // select a visualization driver if needed (e.g. HepFile)
113       {
114         UImanager->ApplyCommand(G4String("/vis/open ") + commandLine->GetOption());
115       }
116       else
117       // by default OGL is used
118       {
119         UImanager->ApplyCommand("/vis/open OGL 800x600-0+0");
120       }
121       UImanager->ApplyCommand("/control/execute vis.mac");
122     }
123   }
124   else
125   // to be use visualization file (= store the visualization into
126   // an external file:
127   // ASCIITree ;  DAWNFILE ; HepRepFile ; VRML(1,2)FILE ; gMocrenFile ...
128   {
129     if ((commandLine = parser->GetCommandIfActive("-vis"))) {
130       UImanager->ApplyCommand(G4String("/vis/open ") + commandLine->GetOption());
131       UImanager->ApplyCommand("/control/execute vis.mac");
132     }
133   }
134 
135   if ((commandLine = parser->GetCommandIfActive("-mac"))) {
136     G4String command = "/control/execute ";
137     UImanager->ApplyCommand(command + commandLine->GetOption());
138   }
139   else {
140     UImanager->ApplyCommand("/control/execute run.in");
141   }
142 
143   if ((commandLine = parser->GetCommandIfActive("-gui"))) {
144     ui->SessionStart();
145     delete ui;
146   }
147 
148   // Job termination
149   // Free the store: user actions, physics_list and detector_description are
150   // owned and deleted by the run manager, so they should not be deleted
151   // in the main() program !
152 
153   delete visManager;
154   delete runManager;
155 
156   CommandLineParser::DeleteInstance();
157 
158   return 0;
159 }
160 
161 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
162 
163 void Parse(int& argc, char** argv)
164 {
165   //////////
166   // Parse options given in commandLine
167   //
168   parser = CommandLineParser::GetParser();
169 
170   parser->AddCommand("-gui", Command::OptionNotCompulsory,
171                      "Select geant4 UI or just launch a geant4 terminal session", "qt");
172 
173   parser->AddCommand("-mac", Command::WithOption, "Give a mac file to execute", "macFile.mac");
174 
175   // You cann your own command, as for instance:
176   //  parser->AddCommand("-seed",
177   //                     Command::WithOption,
178   //                     "Give a seed value in argument to be tested", "seed");
179   // it is then up to you to manage this option
180 
181   parser->AddCommand("-mt", Command::WithOption,
182                      "Launch in MT mode (events computed in parallel,"
183                      " NOT RECOMMENDED WITH CHEMISTRY)",
184                      "2");
185 
186   parser->AddCommand("-vis", Command::WithOption, "Select a visualization driver",
187                      "OGL 600x600-0+0");
188 
189   parser->AddCommand("-novis", Command::WithoutOption, "Deactivate visualization when using GUI");
190 
191   //////////
192   // If -h or --help is given in option : print help and exit
193   //
194   if (parser->Parse(argc, argv) != 0)  // help is being printed
195   {
196     // if you are using ROOT, create a TApplication in this condition in order
197     // to print the help from ROOT as well
198     CommandLineParser::DeleteInstance();
199     // Exit is kept
200     std::exit(0);
201   }
202 
203   ///////////
204   // Kill application if wrong argument in command line
205   //
206   if (parser->CheckIfNotHandledOptionsExists(argc, argv)) {
207     // if you are using ROOT, you should initialise your TApplication
208     // before this condition
209     abort();
210   }
211 }
212