Geant4 Cross Reference

Cross-Referencing   Geant4
Geant4/examples/extended/medical/dna/AuNP/src/PhysicsList.cc

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  1 //
  2 // ********************************************************************
  3 // * License and Disclaimer                                           *
  4 // *                                                                  *
  5 // * The  Geant4 software  is  copyright of the Copyright Holders  of *
  6 // * the Geant4 Collaboration.  It is provided  under  the terms  and *
  7 // * conditions of the Geant4 Software License,  included in the file *
  8 // * LICENSE and available at  http://cern.ch/geant4/license .  These *
  9 // * include a list of copyright holders.                             *
 10 // *                                                                  *
 11 // * Neither the authors of this software system, nor their employing *
 12 // * institutes,nor the agencies providing financial support for this *
 13 // * work  make  any representation or  warranty, express or implied, *
 14 // * regarding  this  software system or assume any liability for its *
 15 // * use.  Please see the license in the file  LICENSE  and URL above *
 16 // * for the full disclaimer and the limitation of liability.         *
 17 // *                                                                  *
 18 // * This  code  implementation is the result of  the  scientific and *
 19 // * technical work of the GEANT4 collaboration.                      *
 20 // * By using,  copying,  modifying or  distributing the software (or *
 21 // * any work based  on the software)  you  agree  to acknowledge its *
 22 // * use  in  resulting  scientific  publications,  and indicate your *
 23 // * acceptance of all terms of the Geant4 Software license.          *
 24 // ********************************************************************
 25 //
 26 // This example is provided by the Geant4-DNA collaboration
 27 // Any report or published results obtained using the Geant4-DNA software
 28 // shall cite the following Geant4-DNA collaboration publication:
 29 // Med. Phys. 37 (2010) 4692-4708
 30 // The Geant4-DNA web site is available at http://geant4-dna.org
 31 //
 32 
 33 #include "PhysicsList.hh"
 34 
 35 #include "DetectorConstruction.hh"
 36 #include "PhysicsListMessenger.hh"
 37 
 38 #include "G4PhysicsConstructorRegistry.hh"
 39 #include "G4PhysicsListHelper.hh"
 40 #include "G4RunManager.hh"
 41 #include "G4SystemOfUnits.hh"
 42 // #include "CommandLineParser.hh"
 43 
 44 #include "G4BetheBlochIonGasModel.hh"
 45 #include "G4BraggIonGasModel.hh"
 46 #include "G4ComptonScattering.hh"
 47 #include "G4DNAAttachment.hh"
 48 #include "G4DNABornExcitationModel.hh"
 49 #include "G4DNABornIonisationModel.hh"
 50 #include "G4DNAChampionElasticModel.hh"
 51 #include "G4DNAChargeDecrease.hh"
 52 #include "G4DNAChargeIncrease.hh"
 53 #include "G4DNAChemistryManager.hh"
 54 #include "G4DNADingfelderChargeDecreaseModel.hh"
 55 #include "G4DNADingfelderChargeIncreaseModel.hh"
 56 #include "G4DNADiracRMatrixExcitationModel.hh"
 57 #include "G4DNAELSEPAElasticModel.hh"
 58 #include "G4DNAElastic.hh"
 59 #include "G4DNAExcitation.hh"
 60 #include "G4DNAGenericIonsManager.hh"
 61 #include "G4DNAIonisation.hh"
 62 #include "G4DNAMeltonAttachmentModel.hh"
 63 #include "G4DNAMillerGreenExcitationModel.hh"
 64 #include "G4DNAPlasmonExcitation.hh"
 65 #include "G4DNAQuinnPlasmonExcitationModel.hh"
 66 #include "G4DNARelativisticIonisationModel.hh"
 67 #include "G4DNARuddIonisationModel.hh"
 68 #include "G4DNASancheExcitationModel.hh"
 69 #include "G4DNAVibExcitation.hh"
 70 #include "G4DummyModel.hh"
 71 #include "G4EmConfigurator.hh"
 72 #include "G4Gamma.hh"
 73 #include "G4GammaConversion.hh"
 74 #include "G4GoudsmitSaundersonMscModel.hh"
 75 #include "G4IonFluctuations.hh"
 76 #include "G4LivermoreBremsstrahlungModel.hh"
 77 #include "G4LivermoreComptonModel.hh"
 78 #include "G4LivermoreGammaConversionModel.hh"
 79 #include "G4LivermoreIonisationModel.hh"
 80 #include "G4LivermorePhotoElectricModel.hh"
 81 #include "G4LivermoreRayleighModel.hh"
 82 #include "G4LossTableManager.hh"
 83 #include "G4MollerBhabhaModel.hh"
 84 #include "G4PenelopeBremsstrahlungModel.hh"
 85 #include "G4PenelopeIonisationModel.hh"
 86 #include "G4PhotoElectricEffect.hh"
 87 #include "G4RayleighScattering.hh"
 88 #include "G4SeltzerBergerModel.hh"
 89 #include "G4StepLimiter.hh"
 90 #include "G4UAtomicDeexcitation.hh"
 91 #include "G4UniversalFluctuation.hh"
 92 #include "G4UrbanMscModel.hh"
 93 #include "G4VEmModel.hh"
 94 #include "G4eBremsstrahlung.hh"
 95 #include "G4eIonisation.hh"
 96 #include "G4eMultipleScattering.hh"
 97 #include "G4hIonisation.hh"
 98 #include "G4hMultipleScattering.hh"
 99 #include "G4ionIonisation.hh"
100 
101 // #include "G4ElectronCapture.hh"
102 
103 #include "G4ProcessTable.hh"
104 
105 // using namespace G4DNAPARSER;
106 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo....
107 
108 PhysicsList::PhysicsList() : G4VModularPhysicsList(), fpDetector(0)
109 {
110   fpDetector = dynamic_cast<const DetectorConstruction*>(
111     G4RunManager::GetRunManager()->GetUserDetectorConstruction());
112   defaultCutValue = 0.1 * nanometer;
113   fcutForGamma = defaultCutValue;
114   fcutForElectron = defaultCutValue;
115   fcutForPositron = defaultCutValue;
116   fcutForProton = defaultCutValue;
117 
118   fPhysMessenger = new PhysicsListMessenger(this);
119   SetVerboseLevel(1);
120 
121   // RegisterConstructor("G4EmDNAChemistry");
122 }
123 
124 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo....
125 
126 PhysicsList::~PhysicsList()
127 {
128   delete fPhysMessenger;
129 }
130 
131 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo....
132 
133 void PhysicsList::RegisterConstructor(const G4String& name)
134 {
135   RegisterPhysics(G4PhysicsConstructorRegistry::Instance()->GetPhysicsConstructor(name));
136 }
137 
138 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo....
139 
140 void PhysicsList::ConstructParticle()
141 {
142   ConstructBosons();
143   ConstructLeptons();
144   ConstructBarions();
145 
146   G4VModularPhysicsList::ConstructParticle();
147 }
148 
149 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo....
150 
151 void PhysicsList::ConstructBosons()
152 {
153   G4Gamma::GammaDefinition();
154 }
155 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo....
156 
157 void PhysicsList::ConstructLeptons()
158 {
159   G4Electron::ElectronDefinition();
160   G4Positron::PositronDefinition();
161 }
162 
163 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo....
164 
165 void PhysicsList::ConstructBarions()
166 {
167   G4Proton::ProtonDefinition();
168   G4GenericIon::GenericIonDefinition();
169 
170   G4DNAGenericIonsManager* genericIonsManager;
171   genericIonsManager = G4DNAGenericIonsManager::Instance();
172   genericIonsManager->GetIon("alpha++");
173   genericIonsManager->GetIon("alpha+");
174   genericIonsManager->GetIon("helium");
175   genericIonsManager->GetIon("hydrogen");
176 }
177 
178 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo....
179 
180 void PhysicsList::ConstructProcess()
181 {
182   ConstructEM();
183   ConstructGeneral();
184 
185   // Contruct processes of the chemistry list
186   G4VModularPhysicsList::ConstructProcess();
187 }
188 
189 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo....
190 
191 void PhysicsList::ConstructEM()
192 {
193   G4bool isGNP = false;
194   if (fphysname == "") fphysname = "DNA";
195 
196   G4Material* NPMaterial = fpDetector->GetNPMaterial();
197   G4String npname = NPMaterial->GetName();
198 
199   if (npname == "G4_Au") isGNP = true;
200 
201   auto theParticleIterator = GetParticleIterator();
202   theParticleIterator->reset();
203 
204   while ((*theParticleIterator)()) {
205     G4ParticleDefinition* particle = theParticleIterator->value();
206 
207     G4ProcessManager* pm = particle->GetProcessManager();
208 
209     G4String particleName = particle->GetParticleName();
210 
211     if (particleName == "e-") {
212       G4DNAElastic* theDNAElasticProcess = new G4DNAElastic("e-_G4DNAElastic");
213       theDNAElasticProcess->SetEmModel(new G4DNAChampionElasticModel(), 1);
214       pm->AddDiscreteProcess(theDNAElasticProcess);
215 
216       G4DNAExcitation* theDNAExcitationProcess = new G4DNAExcitation("e-_G4DNAExcitation");
217       theDNAExcitationProcess->SetEmModel(new G4DNABornExcitationModel(), 1);
218       pm->AddDiscreteProcess(theDNAExcitationProcess);
219 
220       G4DNAIonisation* theDNAIonizationProcess = new G4DNAIonisation("e-_G4DNAIonisation");
221       theDNAIonizationProcess->SetEmModel(new G4DNABornIonisationModel(), 1);
222       pm->AddDiscreteProcess(theDNAIonizationProcess);
223 
224       G4DNAAttachment* theDNAAttachmentProcess = new G4DNAAttachment("e-_G4DNAAttachment");
225       pm->AddDiscreteProcess(theDNAAttachmentProcess);
226 
227       G4DNAVibExcitation* theDNAVibExcProcess = new G4DNAVibExcitation("e-_G4DNAVibExcitation");
228       pm->AddDiscreteProcess(theDNAVibExcProcess);
229 
230       G4eBremsstrahlung* theDNABremProcess = new G4eBremsstrahlung("e-_G4DNABremsstrahlung");
231       pm->AddDiscreteProcess(theDNABremProcess);
232 
233       if (isGNP) {
234         if (fphysname == "DNA") {
235           G4DNAElastic* theDNAELSEPAElasticProcess = new G4DNAElastic("e-_G4DNAELSEPAElastic");
236           theDNAELSEPAElasticProcess->SetEmModel(new G4DummyModel(), 1);
237           pm->AddDiscreteProcess(theDNAELSEPAElasticProcess);
238           G4DNAExcitation* theDNADRMExcitationProcess =
239             new G4DNAExcitation("e-_G4DNADRMExcitation");
240           theDNADRMExcitationProcess->SetEmModel(new G4DummyModel(), 1);
241           pm->AddDiscreteProcess(theDNADRMExcitationProcess);
242           G4DNAIonisation* theDNARelativisticIonizationProcess =
243             new G4DNAIonisation("e-_G4DNARelativisticIonisation");
244           theDNARelativisticIonizationProcess->SetEmModel(new G4DummyModel(), 1);
245           pm->AddDiscreteProcess(theDNARelativisticIonizationProcess);
246           G4DNAPlasmonExcitation* theDNAPExcitationProcess =
247             new G4DNAPlasmonExcitation("e-_G4DNAPlasmonExcitation");
248           theDNAPExcitationProcess->SetEmModel(new G4DummyModel(), 1);
249           pm->AddDiscreteProcess(theDNAPExcitationProcess);
250           G4eBremsstrahlung* theDNAeBremProcess =
251             new G4eBremsstrahlung("e-_G4DNABremsstrahlung_GNP");
252           theDNAeBremProcess->SetEmModel(new G4DummyModel(), 1);
253           pm->AddDiscreteProcess(theDNAeBremProcess);
254         }
255         if (fphysname == "Livermore") {
256           G4eMultipleScattering* msc = new G4eMultipleScattering();
257           msc->SetEmModel(new G4DummyModel(), 1);
258           pm->AddDiscreteProcess(msc);
259           G4eIonisation* eIoni = new G4eIonisation("e-_G4LivermoreIoni");
260           eIoni->SetEmModel(new G4DummyModel(), 1);
261           pm->AddDiscreteProcess(eIoni);
262           G4eBremsstrahlung* eBrem = new G4eBremsstrahlung("e-_G4LivermoreBrem");
263           eBrem->SetEmModel(new G4DummyModel(), 1);
264           pm->AddDiscreteProcess(eBrem);
265 
266           G4StepLimiter* steplimit = new G4StepLimiter();
267           pm->AddDiscreteProcess(steplimit);
268         }
269         if (fphysname == "Penelope") {
270           G4eMultipleScattering* msc = new G4eMultipleScattering();
271           msc->SetEmModel(new G4DummyModel(), 1);
272           pm->AddDiscreteProcess(msc);
273           G4eIonisation* eIoni = new G4eIonisation("e-_G4PenelopeIoni");
274           eIoni->SetEmModel(new G4DummyModel(), 1);
275           pm->AddDiscreteProcess(eIoni);
276           G4eBremsstrahlung* eBrem = new G4eBremsstrahlung("e-_G4PenelopeBrem");
277           eBrem->SetEmModel(new G4DummyModel(), 1);
278           pm->AddDiscreteProcess(eBrem);
279 
280           G4StepLimiter* steplimit = new G4StepLimiter();
281           pm->AddDiscreteProcess(steplimit);
282         }
283       }
284 
285       //// Capture of low-energy e-
286       // G4ElectronCapture* ecap = new G4ElectronCapture("NP",10.*eV);
287       // pm->AddDiscreteProcess(ecap);
288     }
289     else if (particleName == "proton") {
290     }
291     else if (particleName == "hydrogen") {
292     }
293     else if (particleName == "gamma") {
294       G4PhotoElectricEffect* thePhotoElectricEffect = new G4PhotoElectricEffect();
295       thePhotoElectricEffect->SetEmModel(new G4LivermorePhotoElectricModel(), 1);
296       pm->AddDiscreteProcess(thePhotoElectricEffect);
297 
298       G4ComptonScattering* theComptonScattering = new G4ComptonScattering();
299       theComptonScattering->SetEmModel(new G4LivermoreComptonModel(), 1);
300       pm->AddDiscreteProcess(theComptonScattering);
301 
302       G4GammaConversion* theGammaConversion = new G4GammaConversion();
303       theGammaConversion->SetEmModel(new G4LivermoreGammaConversionModel(), 1);
304       pm->AddDiscreteProcess(theGammaConversion);
305 
306       G4RayleighScattering* theRayleigh = new G4RayleighScattering();
307       pm->AddDiscreteProcess(theRayleigh);
308     }
309   }
310 
311   if (isGNP) {
312     G4EmConfigurator* em_config = G4LossTableManager::Instance()->EmConfigurator();
313     G4VEmModel* mod;
314     mod = new G4DNAChampionElasticModel();
315     mod->SetActivationLowEnergyLimit(1 * GeV);
316     em_config->SetExtraEmModel("e-", "e-_G4DNAElastic", mod, "NP");
317     mod = new G4DNABornExcitationModel();
318     mod->SetActivationLowEnergyLimit(1 * GeV);
319     em_config->SetExtraEmModel("e-", "e-_G4DNAExcitation", mod, "NP");
320     mod = new G4DNABornIonisationModel();
321     mod->SetActivationLowEnergyLimit(1 * GeV);
322     em_config->SetExtraEmModel("e-", "e-_G4DNAIonisation", mod, "NP");
323     mod = new G4DNAMeltonAttachmentModel();
324     mod->SetActivationLowEnergyLimit(1 * GeV);
325     em_config->SetExtraEmModel("e-", "e-_G4DNAAttachment", mod, "NP");
326     mod = new G4DNASancheExcitationModel();
327     mod->SetActivationLowEnergyLimit(1 * GeV);
328     em_config->SetExtraEmModel("e-", "e-_G4DNAVibExcitation", mod, "NP");
329     mod = new G4SeltzerBergerModel();
330     mod->SetActivationLowEnergyLimit(1 * GeV);
331     em_config->SetExtraEmModel("e-", "e-_G4DNABremsstrahlung", mod, "NP");
332 
333     if (fphysname == "DNA") {
334       mod = new G4DNAELSEPAElasticModel();
335       em_config->SetExtraEmModel("e-", "e-_G4DNAELSEPAElastic", mod, "NP", 10 * eV, 1 * GeV);
336       mod = new G4DNADiracRMatrixExcitationModel();
337       em_config->SetExtraEmModel("e-", "e-_G4DNADRMExcitation", mod, "NP", 10 * eV, 1 * GeV);
338       mod = new G4DNARelativisticIonisationModel();
339       em_config->SetExtraEmModel("e-", "e-_G4DNARelativisticIonisation", mod, "NP", 10 * eV,
340                                  1 * GeV);
341       mod = new G4DNAQuinnPlasmonExcitationModel();
342       em_config->SetExtraEmModel("e-", "e-_G4DNAPlasmonExcitation", mod, "NP", 10 * eV, 1 * GeV);
343       mod = new G4SeltzerBergerModel();
344       em_config->SetExtraEmModel("e-", "e-_G4DNABremsstrahlung_GNP", mod, "NP", 10 * eV, 1 * GeV);
345     }
346     if (fphysname == "Livermore") {
347       mod = new G4UrbanMscModel();
348       // mod = new G4GoudsmitSaundersonMscModel();
349       em_config->SetExtraEmModel("e-", "msc", mod, "NP", 0 * eV, 100 * MeV,
350                                  new G4UniversalFluctuation());
351       mod = new G4LivermoreIonisationModel();
352       em_config->SetExtraEmModel("e-", "e-_G4LivermoreIoni", mod, "NP", 0 * eV, 1.0 * MeV,
353                                  new G4UniversalFluctuation());
354       mod = new G4LivermoreBremsstrahlungModel();
355       em_config->SetExtraEmModel("e-", "e-_G4LivermoreBrem", mod, "NP", 0 * eV, 1 * GeV,
356                                  new G4UniversalFluctuation());
357     }
358     if (fphysname == "Penelope") {
359       mod = new G4UrbanMscModel();
360       // mod = new G4GoudsmitSaundersonMscModel();
361       em_config->SetExtraEmModel("e-", "msc", mod, "NP", 0 * eV, 100 * MeV,
362                                  new G4UniversalFluctuation());
363       mod = new G4PenelopeIonisationModel();
364       em_config->SetExtraEmModel("e-", "e-_G4PenelopeIoni", mod, "NP", 0 * eV, 1.0 * MeV,
365                                  new G4UniversalFluctuation());
366       mod = new G4PenelopeBremsstrahlungModel();
367       em_config->SetExtraEmModel("e-", "e-_G4PenelopeBrem", mod, "NP", 0 * eV, 1 * GeV,
368                                  new G4UniversalFluctuation());
369     }
370   }
371 
372   G4VAtomDeexcitation* de = new G4UAtomicDeexcitation();
373   G4LossTableManager::Instance()->SetAtomDeexcitation(de);
374   de->SetFluo(true);
375   de->SetPIXE(true);
376   de->SetAuger(true);
377   de->SetAugerCascade(true);
378 }
379 
380 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo....
381 
382 void PhysicsList::ConstructGeneral() {}
383 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo....
384 
385 void PhysicsList::SetCuts()
386 {
387   if (verboseLevel > 0) {
388     G4cout << "PhysicsList::SetCuts:";
389     G4cout << "CutLength : " << G4BestUnit(defaultCutValue, "Length") << G4endl;
390   }
391 
392   SetCutValue(fcutForGamma, "gamma");
393   SetCutValue(fcutForElectron, "e-");
394   SetCutValue(fcutForPositron, "e+");
395 
396   if (verboseLevel > 0) {
397     DumpCutValuesTable();
398   }
399 }
400 void PhysicsList::SetPhysics4NP(const G4String& name)
401 {
402   fphysname = name;
403 }
404