| Geant4 Cross Reference |
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24 // ********************************************************************
25 //
26 //
27 #include "ChromosomeMessenger.hh"
28
29 #include "ChromosomeMapper.hh"
30 #include "UtilityFunctions.hh"
31
32 #include "G4UIcmdWithAString.hh"
33 #include "G4UIdirectory.hh"
34
35 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
36
37 ChromosomeMessenger::ChromosomeMessenger(ChromosomeMapper* mapper)
38 : fpChromosomeMapper(mapper),
39 fpChromosomeDirectory(new G4UIdirectory("/chromosome/")),
40 fpAddChromosome(new G4UIcmdWithAString("/chromosome/add", this)),
41 fpSavePlotData(new G4UIcmdWithAString("/chromosome/plotData", this))
42 {
43 // Chromosomes
44 fpChromosomeDirectory->SetGuidance("Commands for chromosome geometry.");
45 fpAddChromosome->SetGuidance("Add a chromosomal region");
46 fpAddChromosome->SetGuidance("format: shape name geometry-commands");
47 fpAddChromosome->SetGuidance("shape: sphere || cyl || rod || ellipse || box");
48 fpAddChromosome->SetGuidance("geometry-commands:");
49 fpAddChromosome->SetGuidance("sphere: rad x y z unit [rx ry rz]");
50 fpAddChromosome->SetGuidance("cyl: rad height x y z unit [rx ry rz]");
51 fpAddChromosome->SetGuidance("rod: rad height x y z unit [rx ry rz]");
52 fpAddChromosome->SetGuidance("box: x y z unit [rx ry rz]");
53
54 fpAddChromosome->SetGuidance
55 ("ellipse: x-half-axis y-half-axis z-half-axis x y z unit [rx ry rz]");
56 fpAddChromosome->SetGuidance("Rotations are optional and in degrees");
57 fpSavePlotData->SetGuidance("Save plot data to specified file");
58 }
59
60 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
61
62 void ChromosomeMessenger::SetNewValue(G4UIcommand* command, G4String newValue)
63 {
64 if (command == fpAddChromosome.get()) {
65 std::vector<G4String> values = utility::Split(newValue, ' ');
66 G4String key = values[0];
67 std::vector<G4String> commands;
68 for (auto it = (values.begin() + 1); it != values.end(); it++) {
69 commands.emplace_back(*it);
70 }
71 fpChromosomeMapper->AddChromosome(key, commands);
72 }
73 else if (command == fpSavePlotData.get()) {
74 fpChromosomeMapper->SavePlotData(newValue);
75 }
76 }
77 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
78