| Geant4 Cross Reference |
1 // 1 //
2 // ******************************************* 2 // ********************************************************************
3 // * License and Disclaimer 3 // * License and Disclaimer *
4 // * 4 // * *
5 // * The Geant4 software is copyright of th 5 // * The Geant4 software is copyright of the Copyright Holders of *
6 // * the Geant4 Collaboration. It is provided 6 // * the Geant4 Collaboration. It is provided under the terms and *
7 // * conditions of the Geant4 Software License 7 // * conditions of the Geant4 Software License, included in the file *
8 // * LICENSE and available at http://cern.ch/ 8 // * LICENSE and available at http://cern.ch/geant4/license . These *
9 // * include a list of copyright holders. 9 // * include a list of copyright holders. *
10 // * 10 // * *
11 // * Neither the authors of this software syst 11 // * Neither the authors of this software system, nor their employing *
12 // * institutes,nor the agencies providing fin 12 // * institutes,nor the agencies providing financial support for this *
13 // * work make any representation or warran 13 // * work make any representation or warranty, express or implied, *
14 // * regarding this software system or assum 14 // * regarding this software system or assume any liability for its *
15 // * use. Please see the license in the file 15 // * use. Please see the license in the file LICENSE and URL above *
16 // * for the full disclaimer and the limitatio 16 // * for the full disclaimer and the limitation of liability. *
17 // * 17 // * *
18 // * This code implementation is the result 18 // * This code implementation is the result of the scientific and *
19 // * technical work of the GEANT4 collaboratio 19 // * technical work of the GEANT4 collaboration. *
20 // * By using, copying, modifying or distri 20 // * By using, copying, modifying or distributing the software (or *
21 // * any work based on the software) you ag 21 // * any work based on the software) you agree to acknowledge its *
22 // * use in resulting scientific publicati 22 // * use in resulting scientific publications, and indicate your *
23 // * acceptance of all terms of the Geant4 Sof 23 // * acceptance of all terms of the Geant4 Software license. *
24 // ******************************************* 24 // ********************************************************************
25 // 25 //
26 26
27 #include "globals.hh" 27 #include "globals.hh"
28 #include "G4DNAMakeReaction.hh" 28 #include "G4DNAMakeReaction.hh"
29 #include <G4DNAMolecularReactionTable.hh> 29 #include <G4DNAMolecularReactionTable.hh>
30 #include <memory> <<
31 #include "G4DNAIndependentReactionTimeModel.hh 30 #include "G4DNAIndependentReactionTimeModel.hh"
32 #include "G4DNAIndependentReactionTimeStepper. 31 #include "G4DNAIndependentReactionTimeStepper.hh"
33 #include "G4DiffusionControlledReactionModel.h 32 #include "G4DiffusionControlledReactionModel.hh"
34 #include "G4Molecule.hh" 33 #include "G4Molecule.hh"
>> 34 #include "G4ReferenceCast.hh"
35 #include "G4VDNAReactionModel.hh" 35 #include "G4VDNAReactionModel.hh"
>> 36 #include "G4DNAReactionTypeManager.hh"
36 #include "G4ChemicalMoleculeFinder.hh" 37 #include "G4ChemicalMoleculeFinder.hh"
37 38
38 G4DNAIndependentReactionTimeModel::G4DNAIndepe << 39 G4DNAIndependentReactionTimeModel::G4DNAIndependentReactionTimeModel(const G4String& name)
39 const G4String& name) << 40 : G4DNAIndependentReactionTimeModel(name,
40 : G4DNAIndependentReactionTimeModel( << 41 std::unique_ptr<G4DNAIndependentReactionTimeStepper>
41 name, std::make_unique<G4DNAIndependentR << 42 (new G4DNAIndependentReactionTimeStepper()),
42 std::make_unique<G4DNAMakeReaction>()) << 43 std::unique_ptr<G4DNAMakeReaction>
>> 44 (new G4DNAMakeReaction()))
43 {} 45 {}
44 46
45 G4DNAIndependentReactionTimeModel::G4DNAIndepe << 47 G4DNAIndependentReactionTimeModel::G4DNAIndependentReactionTimeModel(const G4String& name,
46 const G4String& name, std::unique_ptr<G4VITT << 48 std::unique_ptr<G4VITTimeStepComputer> pTimeStepper,
47 std::unique_ptr<G4VITReactionProcess> pReact << 49 std::unique_ptr<G4VITReactionProcess> pReactionProcess)
48 : G4VITStepModel(std::move(pTimeStepper), st << 50 : G4VITStepModel(std::move(pTimeStepper),
>> 51 std::move(pReactionProcess),
>> 52 name)
>> 53 , fMolecularReactionTable(reference_cast<const G4DNAMolecularReactionTable*>(fpReactionTable))
49 { 54 {
50 fType1 = G4Molecule::ITType(); << 55 fType1 = G4Molecule::ITType();
51 fType2 = G4Molecule::ITType(); << 56 fType2 = G4Molecule::ITType();
52 } 57 }
53 58
54 G4DNAIndependentReactionTimeModel::~G4DNAIndep << 59 G4DNAIndependentReactionTimeModel::~G4DNAIndependentReactionTimeModel() = default;
55 default; <<
56 60
57 void G4DNAIndependentReactionTimeModel::Initia 61 void G4DNAIndependentReactionTimeModel::Initialize()
58 { 62 {
59 if(fpReactionTable == nullptr) << 63 if(fpReactionTable == nullptr)
60 { << 64 {
61 SetReactionTable(G4DNAMolecularReactionTab << 65 SetReactionTable(G4DNAMolecularReactionTable::GetReactionTable());
62 } << 66 }
63 << 67
64 if(!fpReactionModel) << 68 if(!fpReactionModel)
65 { << 69 {
66 fpReactionModel = std::make_unique<G4Diffu << 70 fpReactionModel.reset(new G4DiffusionControlledReactionModel());
67 } << 71 }
68 << 72
69 fpReactionModel->SetReactionTable( << 73 fpReactionModel->SetReactionTable((const G4DNAMolecularReactionTable*) fpReactionTable);
70 (const G4DNAMolecularReactionTable*) fpRea << 74
71 << 75 ((G4DiffusionControlledReactionModel*) fpReactionModel.get())->SetReactionTypeManager(fReactionTypeManager.get());
72 ((G4DNAMakeReaction*) fpReactionProcess.get( << 76
73 ->SetReactionModel(fpReactionModel.get()); << 77 ((G4DNAMakeReaction*) fpReactionProcess.get())->SetReactionModel(fpReactionModel.get());
74 << 78
75 ((G4DNAMakeReaction*) fpReactionProcess.get( << 79 ((G4DNAMakeReaction*) fpReactionProcess.get())->SetTimeStepComputer(fpTimeStepper.get());
76 ->SetTimeStepComputer(fpTimeStepper.get()) << 80
77 << 81 ((G4DNAIndependentReactionTimeStepper*) fpTimeStepper.get())->SetReactionModel(fpReactionModel.get());
78 ((G4DNAIndependentReactionTimeStepper*) fpTi << 82
79 ->SetReactionModel(fpReactionModel.get()); << 83 ((G4DNAIndependentReactionTimeStepper*) fpTimeStepper.get())->SetReactionTypeManager(fReactionTypeManager.get());
80 << 84
81 ((G4DNAIndependentReactionTimeStepper*) fpTi << 85 ((G4DNAIndependentReactionTimeStepper*) fpTimeStepper.get())->SetReactionProcess((fpReactionProcess).get());
82 ->SetReactionProcess((fpReactionProcess).g << 86
83 << 87 G4ChemicalMoleculeFinder::Instance()->Clear();
84 G4ChemicalMoleculeFinder::Instance()->Clear( << 88 G4VITStepModel::Initialize();
85 G4ChemicalMoleculeFinder::Instance()->SetOct <<
86 G4VITStepModel::Initialize(); <<
87 } 89 }
88 void G4DNAIndependentReactionTimeModel::PrintI 90 void G4DNAIndependentReactionTimeModel::PrintInfo()
89 { 91 {
90 #ifdef G4VERBOSE 92 #ifdef G4VERBOSE
91 if(G4Threading::IsMultithreadedApplication() << 93 if(G4Threading::IsMultithreadedApplication())
92 { << 94 {
93 if(G4Threading::G4GetThreadId() == 0) << 95 if(G4Threading::G4GetThreadId() == 0)
>> 96 {
>> 97 G4VITStepModel::PrintInfo();
>> 98 G4cout<<G4endl;
>> 99 G4cout << fName << " will be used ==========================" << G4endl;
>> 100 G4cout<<G4endl;
>> 101 G4cout << "==============================="
>> 102 "========================================"<<G4endl;
>> 103 G4cout<<G4endl;
>> 104
>> 105 }
>> 106 }
>> 107 else
94 { 108 {
95 G4VITStepModel::PrintInfo(); << 109 G4VITStepModel::PrintInfo();
96 G4cout << G4endl; << 110 G4cout<<G4endl;
97 G4cout << fName << " will be used ====== << 111 G4cout << fName << " will be used ==========================" << G4endl;
98 G4cout << G4endl; << 112 G4cout<<G4endl;
99 G4cout << "============================= << 113 G4cout << "==============================="
100 "============================= << 114 "========================================"<<G4endl;
101 << G4endl; << 115 G4cout<<G4endl;
102 G4cout << G4endl; << 116
103 } 117 }
104 } <<
105 else <<
106 { <<
107 G4VITStepModel::PrintInfo(); <<
108 G4cout << G4endl; <<
109 G4cout << fName << " will be used ======== <<
110 G4cout << G4endl; <<
111 G4cout << "=============================== <<
112 "=============================== <<
113 << G4endl; <<
114 G4cout << G4endl; <<
115 } <<
116 #endif 118 #endif
117 } 119 }
118 120
119 void G4DNAIndependentReactionTimeModel::SetRea << 121 void G4DNAIndependentReactionTimeModel::SetReactionModel(G4VDNAReactionModel* pReactionModel)
120 G4VDNAReactionModel* pReactionModel) <<
121 { 122 {
122 fpReactionModel.reset(pReactionModel); << 123 fpReactionModel.reset(pReactionModel);
123 } 124 }
124 125
125 G4VDNAReactionModel* G4DNAIndependentReactionT 126 G4VDNAReactionModel* G4DNAIndependentReactionTimeModel::GetReactionModel()
126 { 127 {
127 return fpReactionModel.get(); << 128 return fpReactionModel.get();
128 } << 129 }
>> 130
>> 131 void G4DNAIndependentReactionTimeModel::SetReactionTypeManager(G4VReactionTypeManager* pReactionProcessManager)
>> 132 {
>> 133 fReactionTypeManager.reset(pReactionProcessManager);
>> 134 }
135