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Geant4/processes/electromagnetic/dna/models/src/G4DNADiracRMatrixExcitationModel.cc

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Differences between /processes/electromagnetic/dna/models/src/G4DNADiracRMatrixExcitationModel.cc (Version 11.3.0) and /processes/electromagnetic/dna/models/src/G4DNADiracRMatrixExcitationModel.cc (Version 11.2)


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 25 //                                                 25 //
 26 // Created on 2016/05/02                           26 // Created on 2016/05/02
 27 //                                                 27 //
 28 // Authors: D Sakata, S. Incerti                   28 // Authors: D Sakata, S. Incerti
 29 //                                                 29 //
 30 // This class perform electric excitation for      30 // This class perform electric excitation for electron transportation in gold,
 31 // based on Dirac B-Spline R-Matrix method wit     31 // based on Dirac B-Spline R-Matrix method with scaled experimental data 
 32 // for low energy.                                 32 // for low energy.
 33 // See following reference paper                   33 // See following reference paper 
 34 // Phys.Rev.A77,062711(2008) and Phys.Rev.A78,     34 // Phys.Rev.A77,062711(2008) and Phys.Rev.A78,042713(2008)  
 35                                                    35 
 36 #include "G4DNADiracRMatrixExcitationModel.hh"     36 #include "G4DNADiracRMatrixExcitationModel.hh"
 37 #include "G4SystemOfUnits.hh"                      37 #include "G4SystemOfUnits.hh"
 38 #include "G4UAtomicDeexcitation.hh"                38 #include "G4UAtomicDeexcitation.hh"
 39 #include "G4LossTableManager.hh"                   39 #include "G4LossTableManager.hh"
 40 #include "G4Gamma.hh"                              40 #include "G4Gamma.hh"
 41 #include "G4RandomDirection.hh"                    41 #include "G4RandomDirection.hh"
 42                                                    42 
 43 #include <vector>                                  43 #include <vector>
 44                                                    44 
 45 //....oooOO0OOooo........oooOO0OOooo........oo     45 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo....
 46                                                    46 
 47 G4DNADiracRMatrixExcitationModel::G4DNADiracRM     47 G4DNADiracRMatrixExcitationModel::G4DNADiracRMatrixExcitationModel
 48 (const G4ParticleDefinition*,const G4String& n     48 (const G4ParticleDefinition*,const G4String& nam) :
 49     G4VEmModel(nam)                                49     G4VEmModel(nam)  
 50 {                                                  50 {
 51   fpMaterialDensity       = nullptr;               51   fpMaterialDensity       = nullptr;
 52   fHighEnergyLimit        = 0;                     52   fHighEnergyLimit        = 0;
 53   fExperimentalEnergyLimit= 0;                     53   fExperimentalEnergyLimit= 0;
 54   fLowEnergyLimit         = 0;                     54   fLowEnergyLimit         = 0;
 55   fParticleDefinition     = nullptr;               55   fParticleDefinition     = nullptr;
 56                                                    56 
 57   verboseLevel = 0;                                57   verboseLevel = 0;
 58                                                    58 
 59   if (verboseLevel > 0)                            59   if (verboseLevel > 0)
 60   {                                                60   {
 61     G4cout << "Dirac R-matrix excitation model     61     G4cout << "Dirac R-matrix excitation model is constructed " << G4endl;
 62   }                                                62   }
 63                                                    63   
 64   fParticleChangeForGamma = nullptr;               64   fParticleChangeForGamma = nullptr;
 65   statCode                = false;                 65   statCode                = false;
 66 }                                                  66 }
 67                                                    67 
 68 //....oooOO0OOooo........oooOO0OOooo........oo     68 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo....
 69                                                    69 
 70 G4DNADiracRMatrixExcitationModel::~G4DNADiracR     70 G4DNADiracRMatrixExcitationModel::~G4DNADiracRMatrixExcitationModel()
 71 {                                                  71 {
 72   delete fTableData;                               72   delete fTableData;
 73 }                                                  73 }
 74                                                    74 
 75 //....oooOO0OOooo........oooOO0OOooo........oo     75 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo....
 76                                                    76 
 77 void G4DNADiracRMatrixExcitationModel::Initial     77 void G4DNADiracRMatrixExcitationModel::Initialise
 78 (const G4ParticleDefinition* particle,const G4     78 (const G4ParticleDefinition* particle,const G4DataVector& /*cuts*/)
 79 {                                                  79 {
 80                                                    80 
 81   if (verboseLevel > 3)                            81   if (verboseLevel > 3)
 82   {                                                82   {
 83     G4cout <<                                      83     G4cout << 
 84            "Calling G4DNADiracRMatrixExcitatio     84            "Calling G4DNADiracRMatrixExcitationModel::Initialise()" 
 85            << G4endl;                              85            << G4endl;
 86   }                                                86   }
 87                                                    87 
 88   fParticleDefinition = particle;                  88   fParticleDefinition = particle;
 89                                                    89   
 90   if(particle->GetParticleName() == "e-")          90   if(particle->GetParticleName() == "e-")
 91   {                                                91   {
 92     fTableFile = "dna/sigma_excitation_e_dirac     92     fTableFile = "dna/sigma_excitation_e_diracrmatrix_Z79";
 93     fLowEnergyLimit           =  10  *  eV;        93     fLowEnergyLimit           =  10  *  eV;
 94     fExperimentalEnergyLimit  =  577.*  eV;        94     fExperimentalEnergyLimit  =  577.*  eV;
 95     fHighEnergyLimit          =  1.0 * GeV;        95     fHighEnergyLimit          =  1.0 * GeV;
 96   }                                                96   }
 97   else                                             97   else
 98   {                                                98   { 
 99    G4Exception("G4DNADiracRMatrixExcitationMod     99    G4Exception("G4DNADiracRMatrixExcitationModel::Initialise","em0001",
100         FatalException,"Not defined for other     100         FatalException,"Not defined for other particles than electrons.");
101    return;                                        101    return;
102   }                                               102   }
103                                                   103 
104   G4double scaleFactor = 1. * cm * cm;            104   G4double scaleFactor = 1. * cm * cm;
105   fTableData = new G4DNACrossSectionDataSet       105   fTableData = new G4DNACrossSectionDataSet
106               (new G4LogLogInterpolation,eV,sc    106               (new G4LogLogInterpolation,eV,scaleFactor );
107   fTableData->LoadData(fTableFile);               107   fTableData->LoadData(fTableFile);
108                                                   108 
109   if( verboseLevel>0 )                            109   if( verboseLevel>0 )
110   {                                               110   {
111     G4cout << "Dirac R-matrix excitation model    111     G4cout << "Dirac R-matrix excitation model is initialized " << G4endl
112     << "Energy range: "                           112     << "Energy range: "
113     << LowEnergyLimit() / eV << " eV - "<< Hig    113     << LowEnergyLimit() / eV << " eV - "<< HighEnergyLimit() / keV << " keV "
114     << " for "<< particle->GetParticleName()      114     << " for "<< particle->GetParticleName()
115     << G4endl;                                    115     << G4endl;
116   }                                               116   }
117                                                   117 
118   if (isInitialised){return;}                     118   if (isInitialised){return;}
119   fParticleChangeForGamma = GetParticleChangeF    119   fParticleChangeForGamma = GetParticleChangeForGamma();
120   isInitialised = true;                           120   isInitialised = true;
121 }                                                 121 }
122                                                   122 
123 //....oooOO0OOooo........oooOO0OOooo........oo    123 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo....
124                                                   124 
125 G4double G4DNADiracRMatrixExcitationModel::Cro    125 G4double G4DNADiracRMatrixExcitationModel::CrossSectionPerVolume
126                          (const G4Material* ma    126                          (const G4Material* material,
127                           const G4ParticleDefi    127                           const G4ParticleDefinition* particleDefinition,
128                           G4double ekin,          128                           G4double ekin,
129                           G4double,               129                           G4double,
130                           G4double)               130                           G4double)
131 {                                                 131 {
132   if (verboseLevel > 3)                           132   if (verboseLevel > 3)
133   {                                               133   {
134     G4cout <<                                     134     G4cout << 
135         "Calling CrossSectionPerVolume() of G4    135         "Calling CrossSectionPerVolume() of G4DNADiracRMatrixExcitationModel"
136            << G4endl;                             136            << G4endl;
137   }                                               137   }
138                                                   138 
139   G4double atomicNDensity = material->GetAtomi    139   G4double atomicNDensity = material->GetAtomicNumDensityVector()[0];
140                                                   140 
141   // Protection: for single element               141   // Protection: for single element
142   if(material->GetNumberOfElements()>1) return    142   if(material->GetNumberOfElements()>1) return 0.; 
143                                                   143 
144   G4double z              = material->GetZ();     144   G4double z              = material->GetZ();
145                                                   145 
146   // Protection: for Gold                         146   // Protection: for Gold
147   if(z!=79){return 0.;}                           147   if(z!=79){return 0.;}
148                                                   148 
149   G4double sigma=0.;                              149   G4double sigma=0.;
150                                                   150 
151   if(atomicNDensity!= 0.0)                        151   if(atomicNDensity!= 0.0)
152   {                                               152   {
153     if (ekin >= fLowEnergyLimit && ekin < fExp    153     if (ekin >= fLowEnergyLimit && ekin < fExperimentalEnergyLimit)
154     {                                             154     {
155       sigma = fTableData->FindValue(ekin);        155       sigma = fTableData->FindValue(ekin);
156     }                                             156     }
157     else if ((fExperimentalEnergyLimit <= ekin    157     else if ((fExperimentalEnergyLimit <= ekin) && (ekin < fHighEnergyLimit))
158     {                                             158     {    
159       sigma = GetExtendedTotalCrossSection(mat    159       sigma = GetExtendedTotalCrossSection(material,particleDefinition,ekin);
160     }                                             160     }
161                                                   161 
162     if (verboseLevel > 2)                         162     if (verboseLevel > 2)
163     {                                             163     {
164       G4cout<<"_______________________________    164       G4cout<<"__________________________________" << G4endl;
165       G4cout<<"=== G4DNADiracRMatrixExcitation    165       G4cout<<"=== G4DNADiracRMatrixExcitationModel - XS INFO START"<<G4endl;
166       G4cout<<"=== Kinetic energy (eV)=" << ek    166       G4cout<<"=== Kinetic energy (eV)=" << ekin/eV << " particle : " 
167             <<particleDefinition->GetParticleN    167             <<particleDefinition->GetParticleName() << G4endl;
168       G4cout<<"=== Cross section per atom for     168       G4cout<<"=== Cross section per atom for Z="<<z<<" is (cm^2)" 
169             <<sigma/cm/cm << G4endl;              169             <<sigma/cm/cm << G4endl;
170       G4cout<<"=== Cross section per atom for     170       G4cout<<"=== Cross section per atom for Z="<<z<<" is (cm^-1)=" 
171             <<sigma*atomicNDensity/(1./cm) <<     171             <<sigma*atomicNDensity/(1./cm) << G4endl;
172       G4cout<<"=== G4DNADiracRMatrixExcitation    172       G4cout<<"=== G4DNADiracRMatrixExcitationModel - XS INFO END"<<G4endl;
173     }                                             173     }
174   }                                               174   } 
175                                                   175 
176   return sigma*atomicNDensity;                    176   return sigma*atomicNDensity;
177 }                                                 177 }
178                                                   178 
179 //....oooOO0OOooo........oooOO0OOooo........oo    179 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo....
180                                                   180 
181 void G4DNADiracRMatrixExcitationModel::SampleS    181 void G4DNADiracRMatrixExcitationModel::SampleSecondaries
182                          (std::vector<G4Dynami    182                          (std::vector<G4DynamicParticle*>* /*fvect*/,
183                           const G4MaterialCuts    183                           const G4MaterialCutsCouple* couple,
184                           const G4DynamicParti    184                           const G4DynamicParticle* aDynamicParticle,
185                           G4double,G4double)      185                           G4double,G4double)
186 {                                                 186 {
187                                                   187 
188   if (verboseLevel > 3)                           188   if (verboseLevel > 3)
189   {                                               189   {
190     G4cout <<                                     190     G4cout << 
191           "Calling SampleSecondaries() of G4DN    191           "Calling SampleSecondaries() of G4DNADiracRMatrixExcitationModel"
192            << G4endl;                             192            << G4endl;
193   }                                               193   }
194                                                   194 
195   G4ParticleDefinition* particle = aDynamicPar    195   G4ParticleDefinition* particle = aDynamicParticle->GetDefinition();
196   G4double k                     = aDynamicPar    196   G4double k                     = aDynamicParticle->GetKineticEnergy();
197                                                   197 
198   G4int    level                 = RandomSelec    198   G4int    level                 = RandomSelect(couple->GetMaterial(),particle,
199                                                   199                                                 k);
200   G4double excitationEnergy      = ExcitationE    200   G4double excitationEnergy      = ExcitationEnergyAu[level]*eV;
201   G4double newEnergy             = k - excitat    201   G4double newEnergy             = k - excitationEnergy;
202                                                   202 
203   if (newEnergy > 0)                              203   if (newEnergy > 0)
204   {                                               204   {
205     //Energy Loss                                 205     //Energy Loss
206     fParticleChangeForGamma->ProposeMomentumDi    206     fParticleChangeForGamma->ProposeMomentumDirection 
207                   (aDynamicParticle->GetMoment    207                   (aDynamicParticle->GetMomentumDirection());
208     fParticleChangeForGamma->ProposeLocalEnerg    208     fParticleChangeForGamma->ProposeLocalEnergyDeposit(excitationEnergy);
209     if(!statCode) fParticleChangeForGamma->Set    209     if(!statCode) fParticleChangeForGamma->SetProposedKineticEnergy(newEnergy);
210     else          fParticleChangeForGamma->Set    210     else          fParticleChangeForGamma->SetProposedKineticEnergy(k);
211   }                                               211   }
212 }                                                 212 }
213                                                   213 
214 //....oooOO0OOooo........oooOO0OOooo........oo    214 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
215                                                   215 
216 G4double G4DNADiracRMatrixExcitationModel::Get    216 G4double G4DNADiracRMatrixExcitationModel::GetExtendedTotalCrossSection
217                           (const G4Material* m    217                           (const G4Material* material,
218                            const G4ParticleDef    218                            const G4ParticleDefinition* particle,
219                            G4double kineticEne    219                            G4double kineticEnergy)
220 {                                                 220 {
221   G4double value=0;                               221   G4double value=0;
222                                                   222   
223   size_t N=fTableData->NumberOfComponents();      223   size_t N=fTableData->NumberOfComponents();
224                                                   224   
225   for(int i=0;i<(int)N;i++){                      225   for(int i=0;i<(int)N;i++){
226    value = value+GetExtendedPartialCrossSectio    226    value = value+GetExtendedPartialCrossSection(material,i,particle,
227                                                   227                                                 kineticEnergy);
228   }                                               228   }
229                                                   229   
230   return value;                                   230   return value;
231 }                                                 231 }
232                                                   232 
233 //....oooOO0OOooo........oooOO0OOooo........oo    233 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
234                                                   234 
235 G4double G4DNADiracRMatrixExcitationModel::Get    235 G4double G4DNADiracRMatrixExcitationModel::GetExtendedPartialCrossSection
236                          (const G4Material*,      236                          (const G4Material*,
237                           G4int level,            237                           G4int level,
238                           const G4ParticleDefi    238                           const G4ParticleDefinition* particle,
239                           G4double kineticEner    239                           G4double kineticEnergy)
240 {                                                 240 {
241   G4double value=0;                               241   G4double value=0; 
242                                                   242   
243   if(particle->GetParticleName()=="e-"){          243   if(particle->GetParticleName()=="e-"){
244                                                   244   
245     if(level==0){                                 245     if(level==0){
246       // y = [0]+[1]/pow(x-2,2)                   246       // y = [0]+[1]/pow(x-2,2)
247       value = paramFuncTCS_5dto6s1[0]+paramFun    247       value = paramFuncTCS_5dto6s1[0]+paramFuncTCS_5dto6s1[1]
248               /std::pow(kineticEnergy/eV-param    248               /std::pow(kineticEnergy/eV-paramFuncTCS_5dto6s1[2],2);
249     }                                             249     }
250     else if(level==1){                            250     else if(level==1){
251       // y = [0]+[1]/pow(x-2,2)                   251       // y = [0]+[1]/pow(x-2,2)
252       value = paramFuncTCS_5dto6s2[0]+paramFun    252       value = paramFuncTCS_5dto6s2[0]+paramFuncTCS_5dto6s2[1]
253               /std::pow(kineticEnergy/eV-param    253               /std::pow(kineticEnergy/eV-paramFuncTCS_5dto6s2[2],2);
254     }                                             254     }
255     else if(level==2){                            255     else if(level==2){
256       // y = [0]+[1]*log(x-2)/(x-[2])             256       // y = [0]+[1]*log(x-2)/(x-[2])
257       value = paramFuncTCS_6sto6p1[0]+paramFun    257       value = paramFuncTCS_6sto6p1[0]+paramFuncTCS_6sto6p1[1]
258               *G4Log(kineticEnergy/eV-paramFun    258               *G4Log(kineticEnergy/eV-paramFuncTCS_6sto6p1[2])
259               /(kineticEnergy/eV-paramFuncTCS_    259               /(kineticEnergy/eV-paramFuncTCS_6sto6p1[2]);
260     }                                             260     }
261     else if(level==3){                            261     else if(level==3){
262       // y = [0]+[1]*log(x-2)/(x-[2])             262       // y = [0]+[1]*log(x-2)/(x-[2])
263       value = paramFuncTCS_6sto6p2[0]+paramFun    263       value = paramFuncTCS_6sto6p2[0]+paramFuncTCS_6sto6p2[1]
264               *G4Log(kineticEnergy/eV-paramFun    264               *G4Log(kineticEnergy/eV-paramFuncTCS_6sto6p2[2])
265               /(kineticEnergy/eV-paramFuncTCS_    265               /(kineticEnergy/eV-paramFuncTCS_6sto6p2[2]);
266     }                                             266     }
267   }                                               267   }
268                                                   268 
269   return value*cm*cm;                             269   return value*cm*cm;
270 }                                                 270 }
271                                                   271 
272 //....oooOO0OOooo........oooOO0OOooo........oo    272 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
273                                                   273 
274 G4int G4DNADiracRMatrixExcitationModel::Random    274 G4int G4DNADiracRMatrixExcitationModel::RandomSelect
275                          (const G4Material* ma    275                          (const G4Material* material,
276                           const G4ParticleDefi    276                           const G4ParticleDefinition* particle,
277                           G4double kineticEner    277                           G4double kineticEnergy)
278 {                                                 278 {
279   G4double value = 0.;                            279   G4double value = 0.;
280                                                   280 
281   std::size_t NOfComp = fTableData->NumberOfCo    281   std::size_t NOfComp = fTableData->NumberOfComponents();
282                                                   282  
283   std::vector<G4double> valuesBuffer(NOfComp,     283   std::vector<G4double> valuesBuffer(NOfComp, 0.0);
284                                                   284 
285   const auto  n = (G4int)fTableData->NumberOfC    285   const auto  n = (G4int)fTableData->NumberOfComponents();
286                                                   286   
287   G4int i(n);                                     287   G4int i(n);
288                                                   288 
289   while (i > 0)                                   289   while (i > 0)
290   {                                               290   {
291     --i;                                          291     --i;
292     if                                            292     if 
293     ((fLowEnergyLimit<=kineticEnergy)&&(kineti    293     ((fLowEnergyLimit<=kineticEnergy)&&(kineticEnergy<fExperimentalEnergyLimit))
294     {                                             294     {
295       valuesBuffer[i] = fTableData->GetCompone    295       valuesBuffer[i] = fTableData->GetComponent(i)->FindValue(kineticEnergy);
296     }                                             296     }
297     else if                                       297     else if 
298     ((fExperimentalEnergyLimit<=kineticEnergy)    298     ((fExperimentalEnergyLimit<=kineticEnergy)&&(kineticEnergy<fHighEnergyLimit))
299     {                                             299     {
300       valuesBuffer[i]                             300       valuesBuffer[i] 
301             = GetExtendedPartialCrossSection(m    301             = GetExtendedPartialCrossSection(material,i,particle,kineticEnergy);
302     }                                             302     }
303     value += valuesBuffer[i];                     303     value += valuesBuffer[i];
304   }                                               304   }
305   value *= G4UniformRand();                       305   value *= G4UniformRand();
306   i = n;                                          306   i = n;
307   while (i > 0)                                   307   while (i > 0)
308   {                                               308   {
309     --i;                                          309     --i;
310     if (valuesBuffer[i] > value)                  310     if (valuesBuffer[i] > value)
311     {                                             311     {
312       return i;                                   312       return i;
313     }                                             313     }
314     value -= valuesBuffer[i];                     314     value -= valuesBuffer[i];
315   }                                               315   }
316   return 9999;                                    316   return 9999;
317 }                                                 317 }
318                                                   318 
319                                                   319