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Geant4/examples/extended/medical/dna/wvalue/src/Run.cc

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Differences between /examples/extended/medical/dna/wvalue/src/Run.cc (Version 11.3.0) and /examples/extended/medical/dna/wvalue/src/Run.cc (Version 11.2.2)


  1 //                                                  1 //
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 15 // * use.  Please see the license in the file      15 // * use.  Please see the license in the file  LICENSE  and URL above *
 16 // * for the full disclaimer and the limitatio     16 // * for the full disclaimer and the limitation of liability.         *
 17 // *                                               17 // *                                                                  *
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 19 // * technical work of the GEANT4 collaboratio     19 // * technical work of the GEANT4 collaboration.                      *
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 25 //                                                 25 //
 26 // This example is provided by the Geant4-DNA  << 
 27 // Any report or published results obtained us << 
 28 // shall cite the following Geant4-DNA collabo << 
 29 // Med. Phys. 45 (2018) e722-e739              << 
 30 // Phys. Med. 31 (2015) 861-874                << 
 31 // Med. Phys. 37 (2010) 4692-4708              << 
 32 // Int. J. Model. Simul. Sci. Comput. 1 (2010) << 
 33 //                                             << 
 34 // The Geant4-DNA web site is available at htt << 
 35 //                                             << 
 36 /// \file medical/dna/wvalue/src/Run.cc            26 /// \file medical/dna/wvalue/src/Run.cc
 37 /// \brief Implementation of the Run class         27 /// \brief Implementation of the Run class
 38                                                    28 
 39 #include "Run.hh"                                  29 #include "Run.hh"
 40                                                << 
 41 #include "DetectorConstruction.hh"                 30 #include "DetectorConstruction.hh"
 42 #include "HistoManager.hh"                         31 #include "HistoManager.hh"
 43 #include "PrimaryGeneratorAction.hh"               32 #include "PrimaryGeneratorAction.hh"
 44                                                    33 
 45 #include "G4Material.hh"                           34 #include "G4Material.hh"
 46 #include "G4SystemOfUnits.hh"                      35 #include "G4SystemOfUnits.hh"
 47 #include "G4UnitsTable.hh"                         36 #include "G4UnitsTable.hh"
 48                                                    37 
 49 //....oooOO0OOooo........oooOO0OOooo........oo     38 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
 50                                                    39 
 51 Run::Run(const DetectorConstruction* detector)     40 Run::Run(const DetectorConstruction* detector)
 52   : G4Run(),                                   <<  41 : G4Run(),
 53     fDetector(detector),                       <<  42   fDetector(detector),
 54     fParticle(0),                              <<  43   fParticle(0), fEkin(0.),  
 55     fEkin(0.),                                 <<  44   fNbInelastic(0),  fNbInelastic2(0),
 56     fNbInelastic(0),                           <<  45   fEdeposit(0.),  fEdeposit2(0.),
 57     fNbInelastic2(0),                          <<  46   fTrackLen(0.),  fTrackLen2(0.),
 58     fEdeposit(0.),                             <<  47   fProjRange(0.), fProjRange2(0.),
 59     fEdeposit2(0.),                            <<  48   fNbOfSteps(0), fNbOfSteps2(0),
 60     fTrackLen(0.),                             <<  49   fStepSize(0.),  fStepSize2(0.)
 61     fTrackLen2(0.),                            <<  50 { }
 62     fProjRange(0.),                            << 
 63     fProjRange2(0.),                           << 
 64     fNbOfSteps(0),                             << 
 65     fNbOfSteps2(0),                            << 
 66     fStepSize(0.),                             << 
 67     fStepSize2(0.)                             << 
 68 {}                                             << 
 69                                                    51 
 70 //....oooOO0OOooo........oooOO0OOooo........oo     52 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
 71                                                    53 
 72 Run::~Run() {}                                 <<  54 Run::~Run()
                                                   >>  55 { }
 73                                                    56 
 74 //....oooOO0OOooo........oooOO0OOooo........oo     57 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
 75                                                    58 
 76 void Run::SetPrimary(G4ParticleDefinition* par <<  59 void Run::SetPrimary (G4ParticleDefinition* particle, G4double energy)
 77 {                                              <<  60 { 
 78   fParticle = particle;                            61   fParticle = particle;
 79   fEkin = energy;                              <<  62   fEkin     = energy;
 80 }                                                  63 }
 81                                                    64 
 82 //....oooOO0OOooo........oooOO0OOooo........oo     65 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
 83                                                    66 
 84 void Run::AddInelastic(G4int nb)               <<  67 void Run::AddInelastic (G4int nb)        
 85 {                                                  68 {
 86   fNbInelastic += nb;                          <<  69   fNbInelastic  += nb;
 87   fNbInelastic2 += nb * nb;                    <<  70   fNbInelastic2 += nb*nb;
 88 }                                                  71 }
 89                                                    72 
 90 //....oooOO0OOooo........oooOO0OOooo........oo     73 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
 91                                                    74 
 92 void Run::AddEdep(G4double e)                  <<  75 void Run::AddEdep (G4double e)        
 93 {                                                  76 {
 94   fEdeposit += e;                              <<  77   fEdeposit  += e;
 95   fEdeposit2 += e * e;                         <<  78   fEdeposit2 += e*e;
 96 }                                                  79 }
 97                                                    80 
 98 //....oooOO0OOooo........oooOO0OOooo........oo     81 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
 99                                                <<  82     
100 void Run::AddTrackLength(G4double t)           <<  83 void Run::AddTrackLength (G4double t) 
101 {                                                  84 {
102   fTrackLen += t;                              <<  85   fTrackLen  += t;
103   fTrackLen2 += t * t;                         <<  86   fTrackLen2 += t*t;
104 }                                                  87 }
105                                                    88 
106 //....oooOO0OOooo........oooOO0OOooo........oo     89 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
107                                                <<  90     
108 void Run::AddProjRange(G4double x)             <<  91 void Run::AddProjRange (G4double x) 
109 {                                                  92 {
110   fProjRange += x;                             <<  93   fProjRange  += x;
111   fProjRange2 += x * x;                        <<  94   fProjRange2 += x*x;
112 }                                                  95 }
113                                                    96 
114 //....oooOO0OOooo........oooOO0OOooo........oo     97 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
115                                                <<  98     
116 void Run::AddStepSize(G4int nb, G4double st)   <<  99 void Run::AddStepSize (G4int nb, G4double st)
117 {                                                 100 {
118   fNbOfSteps += nb;                            << 101   fNbOfSteps  += nb; 
119   fNbOfSteps2 += nb * nb;                      << 102   fNbOfSteps2 += nb*nb;
120   fStepSize += st;                             << 103   fStepSize   += st ; 
121   fStepSize2 += st * st;                       << 104   fStepSize2  += st*st;  
122 }                                                 105 }
123                                                   106 
124 //....oooOO0OOooo........oooOO0OOooo........oo    107 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
125                                                   108 
126 void Run::Merge(const G4Run* run)                 109 void Run::Merge(const G4Run* run)
127 {                                                 110 {
128   const Run* localRun = static_cast<const Run*    111   const Run* localRun = static_cast<const Run*>(run);
129                                                << 112   
130   // Pass information about primary particle   << 113   // pass information about primary particle
131                                                << 
132   fParticle = localRun->fParticle;                114   fParticle = localRun->fParticle;
133   fEkin = localRun->fEkin;                     << 115   fEkin     = localRun->fEkin;
134                                                << 
135   // Accumulate sums                           << 
136                                                   116 
137   fNbInelastic += localRun->fNbInelastic;      << 117   // accumulate sums
138   fNbInelastic2 += localRun->fNbInelastic2;    << 118   fNbInelastic   += localRun->fNbInelastic;
139   fEdeposit += localRun->fEdeposit;            << 119   fNbInelastic2  += localRun->fNbInelastic2;
140   fEdeposit2 += localRun->fEdeposit2;          << 120   fEdeposit   += localRun->fEdeposit;
141   fTrackLen += localRun->fTrackLen;            << 121   fEdeposit2  += localRun->fEdeposit2;
142   fTrackLen2 += localRun->fTrackLen2;          << 122   fTrackLen   += localRun->fTrackLen;  
143   fProjRange += localRun->fProjRange;          << 123   fTrackLen2  += localRun->fTrackLen2;
                                                   >> 124   fProjRange  += localRun->fProjRange; 
144   fProjRange2 += localRun->fProjRange2;           125   fProjRange2 += localRun->fProjRange2;
145   fNbOfSteps += localRun->fNbOfSteps;          << 126   fNbOfSteps  += localRun->fNbOfSteps ;
146   fNbOfSteps2 += localRun->fNbOfSteps2;           127   fNbOfSteps2 += localRun->fNbOfSteps2;
147   fStepSize += localRun->fStepSize;            << 128   fStepSize   += localRun->fStepSize;  
148   fStepSize2 += localRun->fStepSize2;          << 129   fStepSize2  += localRun->fStepSize2;
149                                                   130 
150   G4Run::Merge(run);                           << 131   G4Run::Merge(run); 
151 }                                              << 132 } 
152                                                   133 
153 //....oooOO0OOooo........oooOO0OOooo........oo    134 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
154                                                   135 
155 void Run::EndOfRun()                           << 136 void Run::EndOfRun() 
156 {                                                 137 {
157   std::ios::fmtflags mode = G4cout.flags();       138   std::ios::fmtflags mode = G4cout.flags();
158   G4cout.setf(std::ios::fixed, std::ios::float << 139   G4cout.setf(std::ios::fixed,std::ios::floatfield);
159   G4int prec = G4cout.precision(2);               140   G4int prec = G4cout.precision(2);
160                                                << 141   
161   // Run conditions                            << 142   //run conditions  
162                                                << 143   //
163   G4Material* material = fDetector->GetAbsorMa    144   G4Material* material = fDetector->GetAbsorMaterial();
164   G4double density = material->GetDensity();   << 145   G4double density  = material->GetDensity();       
165   G4String partName = fParticle->GetParticleNa    146   G4String partName = fParticle->GetParticleName();
166                                                << 147   
167   G4cout << "\n ======================== run s << 148   G4cout << "\n ======================== run summary =====================\n";  
168   G4cout << "\n The run is " << numberOfEvent  << 149   G4cout 
169          << G4BestUnit(fEkin, "Energy") << " t << 150     << "\n The run is " << numberOfEvent << " "<< partName << " of "
170          << G4BestUnit(fDetector->GetAbsorRadi << 151     << G4BestUnit(fEkin,"Energy") << " through a sphere of radius "
171          << " (density: " << G4BestUnit(densit << 152     << G4BestUnit(fDetector->GetAbsorRadius(),"Length") << "of "
                                                   >> 153     << material->GetName() << " (density: " 
                                                   >> 154     << G4BestUnit(density,"Volumic Mass") << ")" << G4endl;    
172                                                   155 
173   if (numberOfEvent == 0) {                       156   if (numberOfEvent == 0) {
174     G4cout.setf(mode, std::ios::floatfield);   << 157     G4cout.setf(mode,std::ios::floatfield);
175     G4cout.precision(prec);                    << 158     G4cout.precision(prec);  
176     return;                                       159     return;
177   }                                               160   }
178                                                   161 
179   fNbInelastic /= numberOfEvent;               << 162   fNbInelastic /= numberOfEvent; fNbInelastic2 /= numberOfEvent;
180   fNbInelastic2 /= numberOfEvent;              << 163 
                                                   >> 164   G4double rms = fNbInelastic2 - fNbInelastic*fNbInelastic;        
                                                   >> 165   if (rms>0.) rms = std::sqrt(rms); else rms = 0.;
181                                                   166 
182   G4double rms = fNbInelastic2 - fNbInelastic  << 167   G4cout.precision(3);       
183   if (rms > 0.)                                << 168   G4cout 
184     rms = std::sqrt(rms);                      << 169     << "\n Nb of ionisations = " << fNbInelastic
185   else                                         << 170     << " +- "                    << rms
186     rms = 0.;                                  << 171     << G4endl;
187                                                << 172 
188   G4cout.precision(3);                         << 173   G4cout.precision(3);       
189   G4cout << "\n Nb of ionisations = " << fNbIn << 174   G4cout 
190                                                << 175     << "\n w = " << G4BestUnit((fEkin)/fNbInelastic,"Energy")
191   G4cout.precision(3);                         << 176     << " +- "    << G4BestUnit((fEkin)*rms/(fNbInelastic*fNbInelastic),"Energy")
192   G4cout << "\n w = " << G4BestUnit((fEkin) /  << 177     << G4endl;
193          << G4BestUnit((fEkin)*rms / (fNbInela << 178 
194                                                << 179   //output file
195   // Output file                               << 180   if(fNbInelastic>0.)
196                                                << 181   {
197   if (fNbInelastic > 0.) {                     << 182     FILE *myFile;
198     FILE* myFile;                              << 183     myFile = fopen ("wvalue.txt","a");
199     myFile = fopen("wvalue.txt", "a");         << 184     fprintf (myFile, "%e %e %e %e %e \n", fEkin/eV, fNbInelastic, rms, 
200     fprintf(myFile, "%e %e %e %e %e \n", fEkin << 185       fEkin/eV/fNbInelastic, (fEkin/eV)*rms/(fNbInelastic*fNbInelastic) );
201             (fEkin / eV) * rms / (fNbInelastic << 186     fclose (myFile);
202     fclose(myFile);                            << 
203   }                                               187   }
204   //                                              188   //
205                                                   189 
206   fEdeposit /= numberOfEvent;                  << 190   fEdeposit /= numberOfEvent; fEdeposit2 /= numberOfEvent;
207   fEdeposit2 /= numberOfEvent;                 << 191   rms = fEdeposit2 - fEdeposit*fEdeposit;        
208   rms = fEdeposit2 - fEdeposit * fEdeposit;    << 192   if (rms>0.) rms = std::sqrt(rms); else rms = 0.;
209   if (rms > 0.)                                << 193 
210     rms = std::sqrt(rms);                      << 194   G4cout.precision(3);       
211   else                                         << 195   G4cout 
212     rms = 0.;                                  << 196     << "\n Total Energy deposited        = " << G4BestUnit(fEdeposit,"Energy")
213                                                << 197     << " +- "                                << G4BestUnit( rms,"Energy")
214   G4cout.precision(3);                         << 198     << G4endl;
215   G4cout << "\n Total Energy deposited         << 199                     
216          << G4BestUnit(rms, "Energy") << G4end << 200   //compute track length of primary track
217                                                << 201   //
218   // Compute track length of primary track     << 202   fTrackLen /= numberOfEvent; fTrackLen2 /= numberOfEvent;
219                                                << 203   rms = fTrackLen2 - fTrackLen*fTrackLen;        
220   fTrackLen /= numberOfEvent;                  << 204   if (rms>0.) rms = std::sqrt(rms); else rms = 0.;
221   fTrackLen2 /= numberOfEvent;                 << 205 
222   rms = fTrackLen2 - fTrackLen * fTrackLen;    << 206   G4cout.precision(3);       
223   if (rms > 0.)                                << 207   G4cout 
224     rms = std::sqrt(rms);                      << 208     << "\n Track length of primary track = " << G4BestUnit(fTrackLen,"Length")
225   else                                         << 209     << " +- "                                << G4BestUnit( rms,"Length");
226     rms = 0.;                                  << 210     
227                                                << 211   //compute projected range of primary track
228   G4cout.precision(3);                         << 212   //
229   G4cout << "\n Track length of primary track  << 213   fProjRange /= numberOfEvent; fProjRange2 /= numberOfEvent;
230          << G4BestUnit(rms, "Length");         << 214   rms = fProjRange2 - fProjRange*fProjRange;        
231                                                << 215   if (rms>0.) rms = std::sqrt(rms); else rms = 0.;
232   // Compute projected range of primary track  << 216    
233                                                << 217   G4cout 
234   fProjRange /= numberOfEvent;                 << 218     << "\n Projected range               = " << G4BestUnit(fProjRange,"Length")
235   fProjRange2 /= numberOfEvent;                << 219     << " +- "                                << G4BestUnit( rms,"Length")    
236   rms = fProjRange2 - fProjRange * fProjRange; << 220     << G4endl;
237   if (rms > 0.)                                << 221     
238     rms = std::sqrt(rms);                      << 222   //nb of steps and step size of primary track
239   else                                         << 223   //
240     rms = 0.;                                  << 
241                                                << 
242   G4cout << "\n Projected range                << 
243          << G4BestUnit(rms, "Length") << G4end << 
244                                                << 
245   // Nb of steps and step size of primary trac << 
246                                                << 
247   G4double dNofEvents = double(numberOfEvent);    224   G4double dNofEvents = double(numberOfEvent);
248   G4double fNbSteps = fNbOfSteps / dNofEvents, << 225   G4double fNbSteps  = fNbOfSteps/dNofEvents, 
249   rms = fNbSteps2 - fNbSteps * fNbSteps;       << 226            fNbSteps2 = fNbOfSteps2/dNofEvents;
250   if (rms > 0.)                                << 227   rms = fNbSteps2 - fNbSteps*fNbSteps;       
251     rms = std::sqrt(rms);                      << 228   if (rms>0.) rms = std::sqrt(rms); else rms = 0.;
252   else                                         << 229 
253     rms = 0.;                                  << 230   G4cout.precision(2);       
254                                                << 231   G4cout << "\n Nb of steps of primary track  = " << fNbSteps << " +- " << rms
255   G4cout.precision(2);                         << 232   << G4endl;
256   G4cout << "\n Nb of steps of primary track   << 233     
257                                                << 234   fStepSize /= numberOfEvent; fStepSize2 /= numberOfEvent;
258   fStepSize /= numberOfEvent;                  << 235   rms = fStepSize2 - fStepSize*fStepSize;        
259   fStepSize2 /= numberOfEvent;                 << 236   if (rms>0.) rms = std::sqrt(rms); else rms = 0.;
260   rms = fStepSize2 - fStepSize * fStepSize;    << 237 
261   if (rms > 0.)                                << 238   G4cout.precision(3);       
262     rms = std::sqrt(rms);                      << 239   G4cout 
263   else                                         << 240     << "\n Step size                     = " << G4BestUnit(fStepSize,"Length")
264     rms = 0.;                                  << 241     << " +- "           << G4BestUnit( rms,"Length")
265                                                << 242     << G4endl;
266   G4cout.precision(3);                         << 
267   G4cout << "\n Step size                      << 
268          << G4BestUnit(rms, "Length") << G4end << 
269                                                << 
270   // Normalize histograms of longitudinal ener << 
271                                                   243 
                                                   >> 244   // normalize histograms of longitudinal energy profile
                                                   >> 245   //
272   G4AnalysisManager* analysisManager = G4Analy    246   G4AnalysisManager* analysisManager = G4AnalysisManager::Instance();
273   G4int ih = 1;                                   247   G4int ih = 1;
274   G4double binWidth = analysisManager->GetH1Wi    248   G4double binWidth = analysisManager->GetH1Width(ih);
275   G4double fac = (1. / (numberOfEvent * binWid << 249   G4double fac = (1./(numberOfEvent*binWidth))*(mm/MeV);
276   analysisManager->ScaleH1(ih, fac);           << 250   analysisManager->ScaleH1(ih,fac);
277                                                << 251     
278   // Reset default formats                     << 252   // reset default formats
279                                                << 253   G4cout.setf(mode,std::ios::floatfield);
280   G4cout.setf(mode, std::ios::floatfield);     << 
281   G4cout.precision(prec);                         254   G4cout.precision(prec);
                                                   >> 255     
282 }                                                 256 }
283                                                   257