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Geant4/examples/extended/medical/dna/wholeNuclearDNA/wholeNuclearDNA.cc

Version: [ ReleaseNotes ] [ 1.0 ] [ 1.1 ] [ 2.0 ] [ 3.0 ] [ 3.1 ] [ 3.2 ] [ 4.0 ] [ 4.0.p1 ] [ 4.0.p2 ] [ 4.1 ] [ 4.1.p1 ] [ 5.0 ] [ 5.0.p1 ] [ 5.1 ] [ 5.1.p1 ] [ 5.2 ] [ 5.2.p1 ] [ 5.2.p2 ] [ 6.0 ] [ 6.0.p1 ] [ 6.1 ] [ 6.2 ] [ 6.2.p1 ] [ 6.2.p2 ] [ 7.0 ] [ 7.0.p1 ] [ 7.1 ] [ 7.1.p1 ] [ 8.0 ] [ 8.0.p1 ] [ 8.1 ] [ 8.1.p1 ] [ 8.1.p2 ] [ 8.2 ] [ 8.2.p1 ] [ 8.3 ] [ 8.3.p1 ] [ 8.3.p2 ] [ 9.0 ] [ 9.0.p1 ] [ 9.0.p2 ] [ 9.1 ] [ 9.1.p1 ] [ 9.1.p2 ] [ 9.1.p3 ] [ 9.2 ] [ 9.2.p1 ] [ 9.2.p2 ] [ 9.2.p3 ] [ 9.2.p4 ] [ 9.3 ] [ 9.3.p1 ] [ 9.3.p2 ] [ 9.4 ] [ 9.4.p1 ] [ 9.4.p2 ] [ 9.4.p3 ] [ 9.4.p4 ] [ 9.5 ] [ 9.5.p1 ] [ 9.5.p2 ] [ 9.6 ] [ 9.6.p1 ] [ 9.6.p2 ] [ 9.6.p3 ] [ 9.6.p4 ] [ 10.0 ] [ 10.0.p1 ] [ 10.0.p2 ] [ 10.0.p3 ] [ 10.0.p4 ] [ 10.1 ] [ 10.1.p1 ] [ 10.1.p2 ] [ 10.1.p3 ] [ 10.2 ] [ 10.2.p1 ] [ 10.2.p2 ] [ 10.2.p3 ] [ 10.3 ] [ 10.3.p1 ] [ 10.3.p2 ] [ 10.3.p3 ] [ 10.4 ] [ 10.4.p1 ] [ 10.4.p2 ] [ 10.4.p3 ] [ 10.5 ] [ 10.5.p1 ] [ 10.6 ] [ 10.6.p1 ] [ 10.6.p2 ] [ 10.6.p3 ] [ 10.7 ] [ 10.7.p1 ] [ 10.7.p2 ] [ 10.7.p3 ] [ 10.7.p4 ] [ 11.0 ] [ 11.0.p1 ] [ 11.0.p2 ] [ 11.0.p3, ] [ 11.0.p4 ] [ 11.1 ] [ 11.1.1 ] [ 11.1.2 ] [ 11.1.3 ] [ 11.2 ] [ 11.2.1 ] [ 11.2.2 ] [ 11.3.0 ]

Diff markup

Differences between /examples/extended/medical/dna/wholeNuclearDNA/wholeNuclearDNA.cc (Version 11.3.0) and /examples/extended/medical/dna/wholeNuclearDNA/wholeNuclearDNA.cc (Version ReleaseNotes)


** Warning: Cannot open xref database.

  1 //                                                  1 
  2 // *******************************************    
  3 // * License and Disclaimer                       
  4 // *                                              
  5 // * The  Geant4 software  is  copyright of th    
  6 // * the Geant4 Collaboration.  It is provided    
  7 // * conditions of the Geant4 Software License    
  8 // * LICENSE and available at  http://cern.ch/    
  9 // * include a list of copyright holders.         
 10 // *                                              
 11 // * Neither the authors of this software syst    
 12 // * institutes,nor the agencies providing fin    
 13 // * work  make  any representation or  warran    
 14 // * regarding  this  software system or assum    
 15 // * use.  Please see the license in the file     
 16 // * for the full disclaimer and the limitatio    
 17 // *                                              
 18 // * This  code  implementation is the result     
 19 // * technical work of the GEANT4 collaboratio    
 20 // * By using,  copying,  modifying or  distri    
 21 // * any work based  on the software)  you  ag    
 22 // * use  in  resulting  scientific  publicati    
 23 // * acceptance of all terms of the Geant4 Sof    
 24 // *******************************************    
 25 //                                                
 26 // This example is provided by the Geant4-DNA     
 27 // Any report or published results obtained us    
 28 // shall cite the following Geant4-DNA collabo    
 29 // Med. Phys. 37 (2010) 4692-4708                 
 30 // The Geant4-DNA web site is available at htt    
 31 //                                                
 32 /// \file wholeNuclearDNA.cc                      
 33 /// \brief Implementation of the microdosimetr    
 34 //                                                
 35 //....oooOO0OOooo........oooOO0OOooo........oo    
 36 #include "G4RunManagerFactory.hh"                 
 37 #include "G4Types.hh"                             
 38 #include "G4UIExecutive.hh"                       
 39 #include "G4UImanager.hh"                         
 40 #include "G4UItcsh.hh"                            
 41 #include "G4UIterminal.hh"                        
 42 #include "G4VisExecutive.hh"                      
 43 #ifdef G4UI_USE_QT                                
 44 #  include "G4UIQt.hh"                            
 45 #endif                                            
 46                                                   
 47 #include "ActionInitialization.hh"                
 48 #include "CommandLineParser.hh"                   
 49 #include "DetectorConstruction.hh"                
 50 #include "PhysicsList.hh"                         
 51                                                   
 52 //....oooOO0OOooo........oooOO0OOooo........oo    
 53                                                   
 54 using namespace G4DNAPARSER;                      
 55 CommandLineParser* parser(0);                     
 56                                                   
 57 void Parse(int& argc, char** argv);               
 58                                                   
 59 int main(int argc, char** argv)                   
 60 {                                                 
 61   //////////                                      
 62   // Parse options given in commandLine           
 63   //                                              
 64   Parse(argc, argv);                              
 65                                                   
 66   //////////                                      
 67   // Construct the run manager according to wh    
 68   //                                              
 69   Command* commandLine(0);                        
 70                                                   
 71   auto* runManager = G4RunManagerFactory::Crea    
 72   if ((commandLine = parser->GetCommandIfActiv    
 73     int nThreads = 2;                             
 74     if (commandLine->GetOption() == "NMAX") {     
 75       nThreads = G4Threading::G4GetNumberOfCor    
 76     }                                             
 77     else {                                        
 78       nThreads = G4UIcommand::ConvertToInt(com    
 79     }                                             
 80                                                   
 81     runManager->SetNumberOfThreads(nThreads);     
 82                                                   
 83     G4cout << "===== WholeNuclearDNA is starte    
 84            << " threads =====" << G4endl;         
 85   }                                               
 86                                                   
 87   // Set mandatory user initialization classes    
 88   DetectorConstruction* detector = new Detecto    
 89   runManager->SetUserInitialization(detector);    
 90   runManager->SetUserInitialization(new Physic    
 91   runManager->SetUserInitialization(new Action    
 92                                                   
 93   // Initialize G4 kernel                         
 94   runManager->Initialize();                       
 95                                                   
 96   // Initialize visualization                     
 97   G4VisManager* visManager = new G4VisExecutiv    
 98   // G4VisExecutive can take a verbosity argum    
 99   // G4VisManager* visManager = new G4VisExecu    
100   visManager->Initialize();                       
101                                                   
102   // Get the pointer to the User Interface man    
103   G4UImanager* UImanager = G4UImanager::GetUIp    
104   G4UIExecutive* ui(0);                           
105                                                   
106   // interactive mode : define UI session         
107   if ((commandLine = parser->GetCommandIfActiv    
108     ui = new G4UIExecutive(argc, argv, command    
109                                                   
110     if (ui->IsGUI()) UImanager->ApplyCommand("    
111                                                   
112     if (parser->GetCommandIfActive("-novis") =    
113     // visualization is used by default           
114     {                                             
115       if ((commandLine = parser->GetCommandIfA    
116       // select a visualization driver if need    
117       {                                           
118         UImanager->ApplyCommand(G4String("/vis    
119       }                                           
120       else                                        
121       // by default OGL is used                   
122       {                                           
123         UImanager->ApplyCommand("/vis/open OGL    
124       }                                           
125       UImanager->ApplyCommand("/control/execut    
126     }                                             
127   }                                               
128   else                                            
129   // to be use visualization file (= store the    
130   // an external file:                            
131   // ASCIITree ;  DAWNFILE ; HepRepFile ; VRML    
132   {                                               
133     if ((commandLine = parser->GetCommandIfAct    
134       UImanager->ApplyCommand(G4String("/vis/o    
135       UImanager->ApplyCommand("/control/execut    
136     }                                             
137   }                                               
138                                                   
139   if ((commandLine = parser->GetCommandIfActiv    
140     G4String command = "/control/execute ";       
141     UImanager->ApplyCommand(command + commandL    
142   }                                               
143   else {                                          
144     UImanager->ApplyCommand("/control/execute     
145   }                                               
146                                                   
147   if ((commandLine = parser->GetCommandIfActiv    
148 #ifdef G4UI_USE_QT                                
149     G4UIQt* UIQt = static_cast<G4UIQt*>(UImana    
150     if (UIQt) {                                   
151       UIQt->AddViewerTabFromFile("README", "RE    
152     }                                             
153 #endif                                            
154     ui->SessionStart();                           
155     delete ui;                                    
156   }                                               
157                                                   
158   delete visManager;                              
159   delete runManager;                              
160                                                   
161   return 0;                                       
162 }                                                 
163                                                   
164 //....oooOO0OOooo........oooOO0OOooo........oo    
165                                                   
166 void GetNameAndPathOfExecutable(char** argv, G    
167 {                                                 
168   // Get the last position of '/'                 
169   std::string aux(argv[0]);                       
170                                                   
171   // get '/' or '\\' depending on unix/mac or     
172 #if defined(_WIN32) || defined(WIN32)             
173   int pos = aux.rfind('\\');                      
174 #else                                             
175   int pos = aux.rfind('/');                       
176 #endif                                            
177                                                   
178   // Get the path and the name                    
179   path = aux.substr(0, pos + 1);                  
180   executable = aux.substr(pos + 1);               
181 }                                                 
182                                                   
183 //....oooOO0OOooo........oooOO0OOooo........oo    
184                                                   
185 void Parse(int& argc, char** argv)                
186 {                                                 
187   //////////                                      
188   // Parse options given in commandLine           
189   //                                              
190   parser = CommandLineParser::GetParser();        
191                                                   
192   parser->AddCommand("-gui", Command::OptionNo    
193                      "Select geant4 UI or just    
194                                                   
195   parser->AddCommand("-mac", Command::WithOpti    
196                                                   
197   // You cann your own command, as for instanc    
198   //  parser->AddCommand("-seed",                 
199   //                     Command::WithOption,     
200   //                     "Give a seed value in    
201   // it is then up to you to manage this optio    
202                                                   
203   parser->AddCommand("-mt", Command::WithOptio    
204                      "2");                        
205                                                   
206   parser->AddCommand("-vis", Command::WithOpti    
207                      "OGL 600x600-0+0");          
208                                                   
209   parser->AddCommand("-novis", Command::Withou    
210                                                   
211   G4String exec;                                  
212   G4String path;                                  
213   GetNameAndPathOfExecutable(argv, exec, path)    
214                                                   
215   parser->AddCommand("-out", Command::OptionNo    
216                      exec);                       
217                                                   
218   //////////                                      
219   // If -h or --help is given in option : prin    
220   //                                              
221   if (parser->Parse(argc, argv) != 0)  // help    
222   {                                               
223     // if you are using ROOT, create a TApplic    
224     // to print the help from ROOT as well        
225     CommandLineParser::DeleteInstance();          
226     std::exit(0);                                 
227   }                                               
228                                                   
229   ///////////                                     
230   // Kill application if wrong argument in com    
231   //                                              
232   if (parser->CheckIfNotHandledOptionsExists(a    
233     // if you are using ROOT, you should initi    
234     // before this condition                      
235     abort();                                      
236   }                                               
237 }                                                 
238