| Geant4 Cross Reference |
1 // 1 //
2 // ******************************************* 2 // ********************************************************************
3 // * License and Disclaimer 3 // * License and Disclaimer *
4 // * 4 // * *
5 // * The Geant4 software is copyright of th 5 // * The Geant4 software is copyright of the Copyright Holders of *
6 // * the Geant4 Collaboration. It is provided 6 // * the Geant4 Collaboration. It is provided under the terms and *
7 // * conditions of the Geant4 Software License 7 // * conditions of the Geant4 Software License, included in the file *
8 // * LICENSE and available at http://cern.ch/ 8 // * LICENSE and available at http://cern.ch/geant4/license . These *
9 // * include a list of copyright holders. 9 // * include a list of copyright holders. *
10 // * 10 // * *
11 // * Neither the authors of this software syst 11 // * Neither the authors of this software system, nor their employing *
12 // * institutes,nor the agencies providing fin 12 // * institutes,nor the agencies providing financial support for this *
13 // * work make any representation or warran 13 // * work make any representation or warranty, express or implied, *
14 // * regarding this software system or assum 14 // * regarding this software system or assume any liability for its *
15 // * use. Please see the license in the file 15 // * use. Please see the license in the file LICENSE and URL above *
16 // * for the full disclaimer and the limitatio 16 // * for the full disclaimer and the limitation of liability. *
17 // * 17 // * *
18 // * This code implementation is the result 18 // * This code implementation is the result of the scientific and *
19 // * technical work of the GEANT4 collaboratio 19 // * technical work of the GEANT4 collaboration. *
20 // * By using, copying, modifying or distri 20 // * By using, copying, modifying or distributing the software (or *
21 // * any work based on the software) you ag 21 // * any work based on the software) you agree to acknowledge its *
22 // * use in resulting scientific publicati 22 // * use in resulting scientific publications, and indicate your *
23 // * acceptance of all terms of the Geant4 Sof 23 // * acceptance of all terms of the Geant4 Software license. *
24 // ******************************************* 24 // ********************************************************************
25 // 25 //
26 // This example is provided by the Geant4-DNA 26 // This example is provided by the Geant4-DNA collaboration
27 // Any report or published results obtained us 27 // Any report or published results obtained using the Geant4-DNA software
28 // shall cite the following Geant4-DNA collabo 28 // shall cite the following Geant4-DNA collaboration publication:
29 // Med. Phys. 37 (2010) 4692-4708 29 // Med. Phys. 37 (2010) 4692-4708
30 // The Geant4-DNA web site is available at htt 30 // The Geant4-DNA web site is available at http://geant4-dna.org
31 // 31 //
32 /// \file wholeNuclearDNA.cc 32 /// \file wholeNuclearDNA.cc
33 /// \brief Implementation of the microdosimetr 33 /// \brief Implementation of the microdosimetry example
34 // 34 //
35 //....oooOO0OOooo........oooOO0OOooo........oo 35 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo....
36 #include "G4RunManagerFactory.hh" <<
37 #include "G4Types.hh" 36 #include "G4Types.hh"
38 #include "G4UIExecutive.hh" << 37
>> 38 #include "G4RunManagerFactory.hh"
>> 39
39 #include "G4UImanager.hh" 40 #include "G4UImanager.hh"
40 #include "G4UItcsh.hh" << 41 #include "G4UIExecutive.hh"
41 #include "G4UIterminal.hh" 42 #include "G4UIterminal.hh"
>> 43 #include "G4UItcsh.hh"
42 #include "G4VisExecutive.hh" 44 #include "G4VisExecutive.hh"
43 #ifdef G4UI_USE_QT 45 #ifdef G4UI_USE_QT
44 # include "G4UIQt.hh" << 46 #include "G4UIQt.hh"
45 #endif 47 #endif
46 48
47 #include "ActionInitialization.hh" 49 #include "ActionInitialization.hh"
48 #include "CommandLineParser.hh" <<
49 #include "DetectorConstruction.hh" 50 #include "DetectorConstruction.hh"
50 #include "PhysicsList.hh" 51 #include "PhysicsList.hh"
>> 52 #include "CommandLineParser.hh"
51 53
52 //....oooOO0OOooo........oooOO0OOooo........oo 54 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
53 55
54 using namespace G4DNAPARSER; 56 using namespace G4DNAPARSER;
55 CommandLineParser* parser(0); 57 CommandLineParser* parser(0);
56 58
57 void Parse(int& argc, char** argv); 59 void Parse(int& argc, char** argv);
58 60
59 int main(int argc, char** argv) << 61 int main(int argc,char** argv)
60 { 62 {
61 ////////// 63 //////////
62 // Parse options given in commandLine 64 // Parse options given in commandLine
63 // 65 //
64 Parse(argc, argv); 66 Parse(argc, argv);
65 67
66 ////////// 68 //////////
67 // Construct the run manager according to wh 69 // Construct the run manager according to whether MT is activated or not
68 // 70 //
69 Command* commandLine(0); 71 Command* commandLine(0);
70 72
71 auto* runManager = G4RunManagerFactory::Crea << 73 auto* runManager= G4RunManagerFactory::CreateRunManager();
72 if ((commandLine = parser->GetCommandIfActiv << 74 if ((commandLine = parser->GetCommandIfActive("-mt")))
>> 75 {
73 int nThreads = 2; 76 int nThreads = 2;
74 if (commandLine->GetOption() == "NMAX") { << 77 if(commandLine->GetOption() == "NMAX")
75 nThreads = G4Threading::G4GetNumberOfCor << 78 {
>> 79 nThreads = G4Threading::G4GetNumberOfCores();
76 } 80 }
77 else { << 81 else
78 nThreads = G4UIcommand::ConvertToInt(com << 82 {
>> 83 nThreads = G4UIcommand::ConvertToInt(commandLine->GetOption());
79 } 84 }
80 85
81 runManager->SetNumberOfThreads(nThreads); 86 runManager->SetNumberOfThreads(nThreads);
82 87
83 G4cout << "===== WholeNuclearDNA is starte << 88 G4cout << "===== WholeNuclearDNA is started with "
84 << " threads =====" << G4endl; << 89 << runManager->GetNumberOfThreads()
>> 90 << " threads =====" << G4endl;
85 } 91 }
86 92
87 // Set mandatory user initialization classes 93 // Set mandatory user initialization classes
88 DetectorConstruction* detector = new Detecto 94 DetectorConstruction* detector = new DetectorConstruction;
89 runManager->SetUserInitialization(detector); 95 runManager->SetUserInitialization(detector);
90 runManager->SetUserInitialization(new Physic 96 runManager->SetUserInitialization(new PhysicsList);
91 runManager->SetUserInitialization(new Action 97 runManager->SetUserInitialization(new ActionInitialization());
92 98
93 // Initialize G4 kernel 99 // Initialize G4 kernel
94 runManager->Initialize(); 100 runManager->Initialize();
95 101
96 // Initialize visualization 102 // Initialize visualization
97 G4VisManager* visManager = new G4VisExecutiv 103 G4VisManager* visManager = new G4VisExecutive;
98 // G4VisExecutive can take a verbosity argum 104 // G4VisExecutive can take a verbosity argument - see /vis/verbose guidance.
99 // G4VisManager* visManager = new G4VisExecu 105 // G4VisManager* visManager = new G4VisExecutive("Quiet");
100 visManager->Initialize(); 106 visManager->Initialize();
101 107
102 // Get the pointer to the User Interface man 108 // Get the pointer to the User Interface manager
103 G4UImanager* UImanager = G4UImanager::GetUIp 109 G4UImanager* UImanager = G4UImanager::GetUIpointer();
104 G4UIExecutive* ui(0); 110 G4UIExecutive* ui(0);
105 111
106 // interactive mode : define UI session 112 // interactive mode : define UI session
107 if ((commandLine = parser->GetCommandIfActiv << 113 if ((commandLine = parser->GetCommandIfActive("-gui")))
108 ui = new G4UIExecutive(argc, argv, command << 114 {
>> 115 ui = new G4UIExecutive(argc, argv,
>> 116 commandLine->GetOption());
109 117
110 if (ui->IsGUI()) UImanager->ApplyCommand(" << 118 if(ui->IsGUI())
>> 119 UImanager->ApplyCommand("/control/execute gui.mac");
111 120
112 if (parser->GetCommandIfActive("-novis") = << 121 if(parser->GetCommandIfActive("-novis") == 0)
113 // visualization is used by default 122 // visualization is used by default
114 { 123 {
115 if ((commandLine = parser->GetCommandIfA << 124 if((commandLine = parser->GetCommandIfActive("-vis")))
116 // select a visualization driver if need 125 // select a visualization driver if needed (e.g. HepFile)
117 { 126 {
118 UImanager->ApplyCommand(G4String("/vis << 127 UImanager->ApplyCommand(G4String("/vis/open ")+
>> 128 commandLine->GetOption());
119 } 129 }
120 else 130 else
121 // by default OGL is used 131 // by default OGL is used
122 { 132 {
123 UImanager->ApplyCommand("/vis/open OGL 133 UImanager->ApplyCommand("/vis/open OGL 800x600-0+0");
124 } 134 }
125 UImanager->ApplyCommand("/control/execut 135 UImanager->ApplyCommand("/control/execute vis.mac");
126 } 136 }
127 } 137 }
128 else 138 else
129 // to be use visualization file (= store the 139 // to be use visualization file (= store the visualization into
130 // an external file: 140 // an external file:
131 // ASCIITree ; DAWNFILE ; HepRepFile ; VRML 141 // ASCIITree ; DAWNFILE ; HepRepFile ; VRML(1,2)FILE ; gMocrenFile ...
132 { 142 {
133 if ((commandLine = parser->GetCommandIfAct << 143 if ((commandLine = parser->GetCommandIfActive("-vis")))
134 UImanager->ApplyCommand(G4String("/vis/o << 144 {
>> 145 UImanager->ApplyCommand(G4String("/vis/open ")+commandLine->GetOption());
135 UImanager->ApplyCommand("/control/execut 146 UImanager->ApplyCommand("/control/execute vis.mac");
136 } 147 }
137 } 148 }
138 149
139 if ((commandLine = parser->GetCommandIfActiv << 150 if ((commandLine = parser->GetCommandIfActive("-mac")))
>> 151 {
140 G4String command = "/control/execute "; 152 G4String command = "/control/execute ";
141 UImanager->ApplyCommand(command + commandL 153 UImanager->ApplyCommand(command + commandLine->GetOption());
142 } 154 }
143 else { << 155 else
>> 156 {
144 UImanager->ApplyCommand("/control/execute 157 UImanager->ApplyCommand("/control/execute wholeNuclearDNA.in");
145 } 158 }
146 159
147 if ((commandLine = parser->GetCommandIfActiv << 160 if ((commandLine = parser->GetCommandIfActive("-gui")))
>> 161 {
148 #ifdef G4UI_USE_QT 162 #ifdef G4UI_USE_QT
149 G4UIQt* UIQt = static_cast<G4UIQt*>(UImana << 163 G4UIQt* UIQt = static_cast<G4UIQt*> (UImanager->GetG4UIWindow());
150 if (UIQt) { << 164 if ( UIQt) {
151 UIQt->AddViewerTabFromFile("README", "RE << 165 UIQt->AddViewerTabFromFile("README", "README from "+ G4String(argv[0]));
152 } 166 }
153 #endif 167 #endif
154 ui->SessionStart(); 168 ui->SessionStart();
155 delete ui; 169 delete ui;
156 } 170 }
157 171
158 delete visManager; 172 delete visManager;
159 delete runManager; 173 delete runManager;
160 174
161 return 0; 175 return 0;
162 } 176 }
163 177
164 //....oooOO0OOooo........oooOO0OOooo........oo 178 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
165 179
166 void GetNameAndPathOfExecutable(char** argv, G << 180 void GetNameAndPathOfExecutable(char** argv,
>> 181 G4String& executable,
>> 182 G4String& path)
167 { 183 {
168 // Get the last position of '/' 184 // Get the last position of '/'
169 std::string aux(argv[0]); 185 std::string aux(argv[0]);
170 186
171 // get '/' or '\\' depending on unix/mac or 187 // get '/' or '\\' depending on unix/mac or windows.
172 #if defined(_WIN32) || defined(WIN32) 188 #if defined(_WIN32) || defined(WIN32)
173 int pos = aux.rfind('\\'); 189 int pos = aux.rfind('\\');
174 #else 190 #else
175 int pos = aux.rfind('/'); 191 int pos = aux.rfind('/');
176 #endif 192 #endif
177 193
178 // Get the path and the name 194 // Get the path and the name
179 path = aux.substr(0, pos + 1); 195 path = aux.substr(0, pos + 1);
180 executable = aux.substr(pos + 1); 196 executable = aux.substr(pos + 1);
181 } 197 }
182 198
183 //....oooOO0OOooo........oooOO0OOooo........oo 199 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
184 200
185 void Parse(int& argc, char** argv) 201 void Parse(int& argc, char** argv)
186 { 202 {
187 ////////// 203 //////////
188 // Parse options given in commandLine 204 // Parse options given in commandLine
189 // 205 //
190 parser = CommandLineParser::GetParser(); 206 parser = CommandLineParser::GetParser();
191 207
192 parser->AddCommand("-gui", Command::OptionNo << 208 parser->AddCommand("-gui",
193 "Select geant4 UI or just << 209 Command::OptionNotCompulsory,
194 << 210 "Select geant4 UI or just launch a geant4 terminal session",
195 parser->AddCommand("-mac", Command::WithOpti << 211 "qt");
196 << 212
197 // You cann your own command, as for instanc << 213 parser->AddCommand("-mac",
198 // parser->AddCommand("-seed", << 214 Command::WithOption,
199 // Command::WithOption, << 215 "Give a mac file to execute",
200 // "Give a seed value in << 216 "macFile.mac");
201 // it is then up to you to manage this optio << 217
202 << 218 // You cann your own command, as for instance:
203 parser->AddCommand("-mt", Command::WithOptio << 219 // parser->AddCommand("-seed",
>> 220 // Command::WithOption,
>> 221 // "Give a seed value in argument to be tested", "seed");
>> 222 // it is then up to you to manage this option
>> 223
>> 224 parser->AddCommand("-mt",
>> 225 Command::WithOption,
>> 226 "Launch in MT mode (events computed in parallel)",
204 "2"); 227 "2");
205 228
206 parser->AddCommand("-vis", Command::WithOpti << 229 parser->AddCommand("-vis",
>> 230 Command::WithOption,
>> 231 "Select a visualization driver",
207 "OGL 600x600-0+0"); 232 "OGL 600x600-0+0");
208 233
209 parser->AddCommand("-novis", Command::Withou << 234 parser->AddCommand("-novis",
>> 235 Command::WithoutOption,
>> 236 "Deactivate visualization when using GUI");
210 237
211 G4String exec; 238 G4String exec;
212 G4String path; 239 G4String path;
213 GetNameAndPathOfExecutable(argv, exec, path) 240 GetNameAndPathOfExecutable(argv, exec, path);
214 241
215 parser->AddCommand("-out", Command::OptionNo << 242 parser->AddCommand("-out",
>> 243 Command::OptionNotCompulsory,
>> 244 "Output files (ROOT is used by default)",
216 exec); 245 exec);
217 246
218 ////////// 247 //////////
219 // If -h or --help is given in option : prin 248 // If -h or --help is given in option : print help and exit
220 // 249 //
221 if (parser->Parse(argc, argv) != 0) // help << 250 if (parser->Parse(argc, argv) != 0) // help is being printed
222 { 251 {
223 // if you are using ROOT, create a TApplic 252 // if you are using ROOT, create a TApplication in this condition in order
224 // to print the help from ROOT as well 253 // to print the help from ROOT as well
225 CommandLineParser::DeleteInstance(); 254 CommandLineParser::DeleteInstance();
226 std::exit(0); 255 std::exit(0);
227 } 256 }
228 257
229 /////////// 258 ///////////
230 // Kill application if wrong argument in com 259 // Kill application if wrong argument in command line
231 // 260 //
232 if (parser->CheckIfNotHandledOptionsExists(a << 261 if (parser->CheckIfNotHandledOptionsExists(argc, argv))
>> 262 {
233 // if you are using ROOT, you should initi 263 // if you are using ROOT, you should initialise your TApplication
234 // before this condition 264 // before this condition
235 abort(); 265 abort();
236 } 266 }
237 } 267 }
>> 268
>> 269
238 270