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1 // 1 //
2 // ******************************************* 2 // ********************************************************************
3 // * License and Disclaimer 3 // * License and Disclaimer *
4 // * 4 // * *
5 // * The Geant4 software is copyright of th 5 // * The Geant4 software is copyright of the Copyright Holders of *
6 // * the Geant4 Collaboration. It is provided 6 // * the Geant4 Collaboration. It is provided under the terms and *
7 // * conditions of the Geant4 Software License 7 // * conditions of the Geant4 Software License, included in the file *
8 // * LICENSE and available at http://cern.ch/ 8 // * LICENSE and available at http://cern.ch/geant4/license . These *
9 // * include a list of copyright holders. 9 // * include a list of copyright holders. *
10 // * 10 // * *
11 // * Neither the authors of this software syst 11 // * Neither the authors of this software system, nor their employing *
12 // * institutes,nor the agencies providing fin 12 // * institutes,nor the agencies providing financial support for this *
13 // * work make any representation or warran 13 // * work make any representation or warranty, express or implied, *
14 // * regarding this software system or assum 14 // * regarding this software system or assume any liability for its *
15 // * use. Please see the license in the file 15 // * use. Please see the license in the file LICENSE and URL above *
16 // * for the full disclaimer and the limitatio 16 // * for the full disclaimer and the limitation of liability. *
17 // * 17 // * *
18 // * This code implementation is the result 18 // * This code implementation is the result of the scientific and *
19 // * technical work of the GEANT4 collaboratio 19 // * technical work of the GEANT4 collaboration. *
20 // * By using, copying, modifying or distri 20 // * By using, copying, modifying or distributing the software (or *
21 // * any work based on the software) you ag 21 // * any work based on the software) you agree to acknowledge its *
22 // * use in resulting scientific publicati 22 // * use in resulting scientific publications, and indicate your *
23 // * acceptance of all terms of the Geant4 Sof 23 // * acceptance of all terms of the Geant4 Software license. *
24 // ******************************************* 24 // ********************************************************************
25 // 25 //
26 // This example is provided by the Geant4-DNA 26 // This example is provided by the Geant4-DNA collaboration
27 // Any report or published results obtained us << 27 // Any report or published results obtained using the Geant4-DNA software
28 // shall cite the following Geant4-DNA collabo 28 // shall cite the following Geant4-DNA collaboration publication:
29 // Med. Phys. 37 (2010) 4692-4708 29 // Med. Phys. 37 (2010) 4692-4708
30 // The Geant4-DNA web site is available at htt 30 // The Geant4-DNA web site is available at http://geant4-dna.org
31 // 31 //
>> 32 // $ID$
32 /// \file wholeNuclearDNA.cc 33 /// \file wholeNuclearDNA.cc
33 /// \brief Implementation of the microdosimetr 34 /// \brief Implementation of the microdosimetry example
34 // 35 //
35 //....oooOO0OOooo........oooOO0OOooo........oo 36 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo....
36 #include "G4RunManagerFactory.hh" << 37
37 #include "G4Types.hh" << 38 #ifdef G4MULTITHREADED
38 #include "G4UIExecutive.hh" << 39 #include "G4MTRunManager.hh"
>> 40 #else
>> 41 #include "G4RunManager.hh"
>> 42 #endif
>> 43
39 #include "G4UImanager.hh" 44 #include "G4UImanager.hh"
40 #include "G4UItcsh.hh" << 45 #include "G4UIExecutive.hh"
41 #include "G4UIterminal.hh" 46 #include "G4UIterminal.hh"
>> 47 #include "G4UItcsh.hh"
42 #include "G4VisExecutive.hh" 48 #include "G4VisExecutive.hh"
43 #ifdef G4UI_USE_QT 49 #ifdef G4UI_USE_QT
44 # include "G4UIQt.hh" << 50 #include "G4UIQt.hh"
45 #endif 51 #endif
46 52
47 #include "ActionInitialization.hh" 53 #include "ActionInitialization.hh"
48 #include "CommandLineParser.hh" <<
49 #include "DetectorConstruction.hh" 54 #include "DetectorConstruction.hh"
50 #include "PhysicsList.hh" 55 #include "PhysicsList.hh"
>> 56 #include "CommandLineParser.hh"
51 57
52 //....oooOO0OOooo........oooOO0OOooo........oo 58 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
53 59
54 using namespace G4DNAPARSER; 60 using namespace G4DNAPARSER;
55 CommandLineParser* parser(0); 61 CommandLineParser* parser(0);
56 62
57 void Parse(int& argc, char** argv); 63 void Parse(int& argc, char** argv);
58 64
59 int main(int argc, char** argv) << 65 int main(int argc,char** argv)
60 { 66 {
>> 67 // Choose the Random engine
>> 68
>> 69 G4Random::setTheEngine(new CLHEP::RanecuEngine);
>> 70
61 ////////// 71 //////////
62 // Parse options given in commandLine 72 // Parse options given in commandLine
63 // 73 //
64 Parse(argc, argv); 74 Parse(argc, argv);
65 75
66 ////////// 76 //////////
67 // Construct the run manager according to wh 77 // Construct the run manager according to whether MT is activated or not
68 // 78 //
69 Command* commandLine(0); 79 Command* commandLine(0);
70 80
71 auto* runManager = G4RunManagerFactory::Crea << 81 #ifdef G4MULTITHREADED
72 if ((commandLine = parser->GetCommandIfActiv << 82 G4MTRunManager* runManager= new G4MTRunManager;
>> 83 if ((commandLine = parser->GetCommandIfActive("-mt")))
>> 84 {
73 int nThreads = 2; 85 int nThreads = 2;
74 if (commandLine->GetOption() == "NMAX") { << 86 if(commandLine->GetOption() == "NMAX")
75 nThreads = G4Threading::G4GetNumberOfCor << 87 {
>> 88 nThreads = G4Threading::G4GetNumberOfCores();
76 } 89 }
77 else { << 90 else
78 nThreads = G4UIcommand::ConvertToInt(com << 91 {
>> 92 nThreads = G4UIcommand::ConvertToInt(commandLine->GetOption());
79 } 93 }
80 << 94 G4cout << "===== WholeNuclearDNA is started with "
>> 95 << runManager->GetNumberOfThreads()
>> 96 << " threads =====" << G4endl;
>> 97
81 runManager->SetNumberOfThreads(nThreads); 98 runManager->SetNumberOfThreads(nThreads);
82 <<
83 G4cout << "===== WholeNuclearDNA is starte <<
84 << " threads =====" << G4endl; <<
85 } 99 }
>> 100 #else
>> 101 G4RunManager* runManager = new G4RunManager();
>> 102 #endif
86 103
87 // Set mandatory user initialization classes 104 // Set mandatory user initialization classes
88 DetectorConstruction* detector = new Detecto 105 DetectorConstruction* detector = new DetectorConstruction;
89 runManager->SetUserInitialization(detector); 106 runManager->SetUserInitialization(detector);
90 runManager->SetUserInitialization(new Physic 107 runManager->SetUserInitialization(new PhysicsList);
91 runManager->SetUserInitialization(new Action 108 runManager->SetUserInitialization(new ActionInitialization());
92 << 109
93 // Initialize G4 kernel 110 // Initialize G4 kernel
94 runManager->Initialize(); 111 runManager->Initialize();
95 112
96 // Initialize visualization 113 // Initialize visualization
97 G4VisManager* visManager = new G4VisExecutiv 114 G4VisManager* visManager = new G4VisExecutive;
98 // G4VisExecutive can take a verbosity argum 115 // G4VisExecutive can take a verbosity argument - see /vis/verbose guidance.
99 // G4VisManager* visManager = new G4VisExecu 116 // G4VisManager* visManager = new G4VisExecutive("Quiet");
100 visManager->Initialize(); 117 visManager->Initialize();
101 118
102 // Get the pointer to the User Interface man 119 // Get the pointer to the User Interface manager
103 G4UImanager* UImanager = G4UImanager::GetUIp 120 G4UImanager* UImanager = G4UImanager::GetUIpointer();
104 G4UIExecutive* ui(0); 121 G4UIExecutive* ui(0);
105 122
106 // interactive mode : define UI session 123 // interactive mode : define UI session
107 if ((commandLine = parser->GetCommandIfActiv << 124 if ((commandLine = parser->GetCommandIfActive("-gui")))
108 ui = new G4UIExecutive(argc, argv, command << 125 {
>> 126 ui = new G4UIExecutive(argc, argv,
>> 127 commandLine->GetOption());
109 128
110 if (ui->IsGUI()) UImanager->ApplyCommand(" << 129 if(ui->IsGUI())
>> 130 UImanager->ApplyCommand("/control/execute gui.mac");
111 131
112 if (parser->GetCommandIfActive("-novis") = << 132 if(parser->GetCommandIfActive("-novis") == 0)
113 // visualization is used by default 133 // visualization is used by default
114 { 134 {
115 if ((commandLine = parser->GetCommandIfA << 135 if((commandLine = parser->GetCommandIfActive("-vis")))
116 // select a visualization driver if need 136 // select a visualization driver if needed (e.g. HepFile)
117 { 137 {
118 UImanager->ApplyCommand(G4String("/vis << 138 UImanager->ApplyCommand(G4String("/vis/open ")+
>> 139 commandLine->GetOption());
119 } 140 }
120 else 141 else
121 // by default OGL is used 142 // by default OGL is used
122 { 143 {
123 UImanager->ApplyCommand("/vis/open OGL 144 UImanager->ApplyCommand("/vis/open OGL 800x600-0+0");
124 } 145 }
125 UImanager->ApplyCommand("/control/execut 146 UImanager->ApplyCommand("/control/execute vis.mac");
126 } 147 }
127 } 148 }
128 else 149 else
129 // to be use visualization file (= store the 150 // to be use visualization file (= store the visualization into
130 // an external file: 151 // an external file:
131 // ASCIITree ; DAWNFILE ; HepRepFile ; VRML 152 // ASCIITree ; DAWNFILE ; HepRepFile ; VRML(1,2)FILE ; gMocrenFile ...
132 { 153 {
133 if ((commandLine = parser->GetCommandIfAct << 154 if ((commandLine = parser->GetCommandIfActive("-vis")))
134 UImanager->ApplyCommand(G4String("/vis/o << 155 {
>> 156 UImanager->ApplyCommand(G4String("/vis/open ")+commandLine->GetOption());
135 UImanager->ApplyCommand("/control/execut 157 UImanager->ApplyCommand("/control/execute vis.mac");
136 } 158 }
137 } 159 }
138 160
139 if ((commandLine = parser->GetCommandIfActiv << 161 if ((commandLine = parser->GetCommandIfActive("-mac")))
>> 162 {
140 G4String command = "/control/execute "; 163 G4String command = "/control/execute ";
141 UImanager->ApplyCommand(command + commandL 164 UImanager->ApplyCommand(command + commandLine->GetOption());
142 } 165 }
143 else { << 166 else
>> 167 {
144 UImanager->ApplyCommand("/control/execute 168 UImanager->ApplyCommand("/control/execute wholeNuclearDNA.in");
145 } 169 }
146 170
147 if ((commandLine = parser->GetCommandIfActiv << 171 if ((commandLine = parser->GetCommandIfActive("-gui")))
>> 172 {
148 #ifdef G4UI_USE_QT 173 #ifdef G4UI_USE_QT
149 G4UIQt* UIQt = static_cast<G4UIQt*>(UImana << 174 G4UIQt* UIQt = static_cast<G4UIQt*> (UImanager->GetG4UIWindow());
150 if (UIQt) { << 175 if ( UIQt) {
151 UIQt->AddViewerTabFromFile("README", "RE << 176 UIQt->AddViewerTabFromFile("README", "README from "+ G4String(argv[0]));
152 } 177 }
153 #endif 178 #endif
154 ui->SessionStart(); 179 ui->SessionStart();
155 delete ui; 180 delete ui;
156 } 181 }
157 182
158 delete visManager; 183 delete visManager;
159 delete runManager; 184 delete runManager;
160 185
161 return 0; 186 return 0;
162 } 187 }
163 188
164 //....oooOO0OOooo........oooOO0OOooo........oo 189 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
165 190
166 void GetNameAndPathOfExecutable(char** argv, G << 191 void GetNameAndPathOfExecutable(char** argv,
>> 192 G4String& executable,
>> 193 G4String& path)
167 { 194 {
168 // Get the last position of '/' 195 // Get the last position of '/'
169 std::string aux(argv[0]); 196 std::string aux(argv[0]);
170 197
171 // get '/' or '\\' depending on unix/mac or 198 // get '/' or '\\' depending on unix/mac or windows.
172 #if defined(_WIN32) || defined(WIN32) 199 #if defined(_WIN32) || defined(WIN32)
173 int pos = aux.rfind('\\'); 200 int pos = aux.rfind('\\');
174 #else 201 #else
175 int pos = aux.rfind('/'); 202 int pos = aux.rfind('/');
176 #endif 203 #endif
177 204
178 // Get the path and the name 205 // Get the path and the name
179 path = aux.substr(0, pos + 1); 206 path = aux.substr(0, pos + 1);
180 executable = aux.substr(pos + 1); 207 executable = aux.substr(pos + 1);
181 } 208 }
182 209
183 //....oooOO0OOooo........oooOO0OOooo........oo 210 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
184 211
185 void Parse(int& argc, char** argv) 212 void Parse(int& argc, char** argv)
186 { 213 {
187 ////////// 214 //////////
188 // Parse options given in commandLine 215 // Parse options given in commandLine
189 // 216 //
190 parser = CommandLineParser::GetParser(); 217 parser = CommandLineParser::GetParser();
191 218
192 parser->AddCommand("-gui", Command::OptionNo << 219 parser->AddCommand("-gui",
193 "Select geant4 UI or just << 220 Command::OptionNotCompulsory,
194 << 221 "Select geant4 UI or just launch a geant4 terminal session",
195 parser->AddCommand("-mac", Command::WithOpti << 222 "qt");
196 << 223
197 // You cann your own command, as for instanc << 224 parser->AddCommand("-mac",
198 // parser->AddCommand("-seed", << 225 Command::WithOption,
199 // Command::WithOption, << 226 "Give a mac file to execute",
200 // "Give a seed value in << 227 "macFile.mac");
201 // it is then up to you to manage this optio << 228
202 << 229 // You cann your own command, as for instance:
203 parser->AddCommand("-mt", Command::WithOptio << 230 // parser->AddCommand("-seed",
>> 231 // Command::WithOption,
>> 232 // "Give a seed value in argument to be tested", "seed");
>> 233 // it is then up to you to manage this option
>> 234
>> 235 #ifdef G4MULTITHREADED
>> 236 parser->AddCommand("-mt",
>> 237 Command::WithOption,
>> 238 "Launch in MT mode (events computed in parallel)",
204 "2"); 239 "2");
>> 240 #endif
205 241
206 parser->AddCommand("-vis", Command::WithOpti << 242 parser->AddCommand("-vis",
>> 243 Command::WithOption,
>> 244 "Select a visualization driver",
207 "OGL 600x600-0+0"); 245 "OGL 600x600-0+0");
208 246
209 parser->AddCommand("-novis", Command::Withou << 247 parser->AddCommand("-novis",
>> 248 Command::WithoutOption,
>> 249 "Deactivate visualization when using GUI");
210 250
211 G4String exec; 251 G4String exec;
212 G4String path; 252 G4String path;
213 GetNameAndPathOfExecutable(argv, exec, path) 253 GetNameAndPathOfExecutable(argv, exec, path);
214 254
215 parser->AddCommand("-out", Command::OptionNo << 255 parser->AddCommand("-out",
>> 256 Command::OptionNotCompulsory,
>> 257 "Output files (ROOT is used by default)",
216 exec); 258 exec);
217 259
218 ////////// 260 //////////
219 // If -h or --help is given in option : prin 261 // If -h or --help is given in option : print help and exit
220 // 262 //
221 if (parser->Parse(argc, argv) != 0) // help << 263 if (parser->Parse(argc, argv) != 0) // help is being printed
222 { 264 {
223 // if you are using ROOT, create a TApplic 265 // if you are using ROOT, create a TApplication in this condition in order
224 // to print the help from ROOT as well 266 // to print the help from ROOT as well
225 CommandLineParser::DeleteInstance(); 267 CommandLineParser::DeleteInstance();
226 std::exit(0); 268 std::exit(0);
227 } 269 }
228 270
229 /////////// 271 ///////////
230 // Kill application if wrong argument in com 272 // Kill application if wrong argument in command line
231 // 273 //
232 if (parser->CheckIfNotHandledOptionsExists(a << 274 if (parser->CheckIfNotHandledOptionsExists(argc, argv))
>> 275 {
233 // if you are using ROOT, you should initi 276 // if you are using ROOT, you should initialise your TApplication
234 // before this condition 277 // before this condition
235 abort(); 278 abort();
236 } 279 }
237 } 280 }
>> 281
>> 282
238 283