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25 // 25 //
26 // This example is provided by the Geant4-DNA <<
27 // Any report or published results obtained us <<
28 // shall cite the following Geant4-DNA collabo <<
29 // Med. Phys. 45 (2018) e722-e739 <<
30 // Phys. Med. 31 (2015) 861-874 <<
31 // Med. Phys. 37 (2010) 4692-4708 <<
32 // Int. J. Model. Simul. Sci. Comput. 1 (2010) <<
33 // <<
34 // The Geant4-DNA web site is available at htt <<
35 // <<
36 /// \file medical/dna/svalue/src/Run.cc 26 /// \file medical/dna/svalue/src/Run.cc
37 /// \brief Implementation of the Run class 27 /// \brief Implementation of the Run class
>> 28 //
>> 29 // $Id: Run.cc 71376 2013-06-14 07:44:50Z maire $
>> 30 //
>> 31 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
>> 32 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
38 33
39 #include "Run.hh" 34 #include "Run.hh"
>> 35 #include "DetectorConstruction.hh"
40 36
41 #include "HistoManager.hh" 37 #include "HistoManager.hh"
42 #include "MyFile.hh" << 38 #include "PrimaryGeneratorAction.hh"
43 <<
44 #ifdef MYFILE <<
45 # include "MyPrimaryGeneratorActionFromFile.h <<
46 #else <<
47 # include "PrimaryGeneratorAction.hh" <<
48 #endif <<
49 39
>> 40 #include "G4Material.hh"
50 #include "G4SystemOfUnits.hh" 41 #include "G4SystemOfUnits.hh"
51 #include "G4UnitsTable.hh" 42 #include "G4UnitsTable.hh"
52 43
53 //....oooOO0OOooo........oooOO0OOooo........oo 44 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
54 45
55 Run::Run(const DetectorConstruction* detector) 46 Run::Run(const DetectorConstruction* detector)
56 : G4Run(), << 47 : G4Run(),
57 fDetector(detector), << 48 fDetector(detector),
58 fParticle(0), << 49 fParticle(0), fEkin(0.),
59 fEkin(0.), << 50 fEdeposit(0.), fEdeposit2(0.),
60 fCytoEdeposit(0.), << 51 fTrackLen(0.), fTrackLen2(0.),
61 fCytoEdeposit2(0.), << 52 fProjRange(0.), fProjRange2(0.),
62 fNuclEdeposit(0.), << 53 fNbOfSteps(0), fNbOfSteps2(0),
63 fNuclEdeposit2(0.), << 54 fStepSize(0.), fStepSize2(0.)
64 fTrackLen(0.), << 55 { }
65 fTrackLen2(0.), <<
66 fProjRange(0.), <<
67 fProjRange2(0.), <<
68 fNbOfSteps(0), <<
69 fNbOfSteps2(0), <<
70 fStepSize(0.), <<
71 fStepSize2(0.) <<
72 {} <<
73 56
74 //....oooOO0OOooo........oooOO0OOooo........oo 57 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
75 58
76 Run::~Run() {} << 59 Run::~Run()
>> 60 { }
77 61
78 //....oooOO0OOooo........oooOO0OOooo........oo 62 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
79 63
80 void Run::SetPrimary(G4ParticleDefinition* par << 64 void Run::SetPrimary (G4ParticleDefinition* particle, G4double energy)
81 { << 65 {
82 fParticle = particle; 66 fParticle = particle;
83 fEkin = energy; << 67 fEkin = energy;
84 } 68 }
85 69
86 //....oooOO0OOooo........oooOO0OOooo........oo 70 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
87 71
88 void Run::AddCytoEdep(G4double e) << 72 void Run::AddEdep (G4double e)
89 { 73 {
90 fCytoEdeposit += e; << 74 fEdeposit += e;
91 fCytoEdeposit2 += e * e; << 75 fEdeposit2 += e*e;
92 } 76 }
93 77
94 //....oooOO0OOooo........oooOO0OOooo........oo 78 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
95 << 79
96 void Run::AddNuclEdep(G4double e) << 80 void Run::AddTrackLength (G4double t)
97 { 81 {
98 fNuclEdeposit += e; << 82 fTrackLen += t;
99 fNuclEdeposit2 += e * e; << 83 fTrackLen2 += t*t;
100 } 84 }
101 85
102 //....oooOO0OOooo........oooOO0OOooo........oo 86 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
103 << 87
104 void Run::AddTrackLength(G4double t) << 88 void Run::AddProjRange (G4double x)
105 { 89 {
106 fTrackLen += t; << 90 fProjRange += x;
107 fTrackLen2 += t * t; << 91 fProjRange2 += x*x;
108 } 92 }
109 93
110 //....oooOO0OOooo........oooOO0OOooo........oo 94 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
111 << 95
112 void Run::AddProjRange(G4double x) << 96 void Run::AddStepSize (G4int nb, G4double st)
113 { <<
114 fProjRange += x; <<
115 fProjRange2 += x * x; <<
116 } <<
117 <<
118 //....oooOO0OOooo........oooOO0OOooo........oo <<
119 <<
120 void Run::AddStepSize(G4int nb, G4double st) <<
121 { 97 {
122 fNbOfSteps += nb; << 98 fNbOfSteps += nb;
123 fNbOfSteps2 += nb * nb; << 99 fNbOfSteps2 += nb*nb;
124 fStepSize += st; << 100 fStepSize += st ;
125 fStepSize2 += st * st; << 101 fStepSize2 += st*st;
126 } 102 }
127 103
128 //....oooOO0OOooo........oooOO0OOooo........oo 104 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
129 105
130 void Run::Merge(const G4Run* run) 106 void Run::Merge(const G4Run* run)
131 { 107 {
132 const Run* localRun = static_cast<const Run* 108 const Run* localRun = static_cast<const Run*>(run);
133 << 109
134 // Pass information about primary particle << 110 // pass information about primary particle
135 <<
136 fParticle = localRun->fParticle; 111 fParticle = localRun->fParticle;
137 fEkin = localRun->fEkin; << 112 fEkin = localRun->fEkin;
138 113
139 // Accumulate sums << 114 // accumulate sums
140 << 115 fEdeposit += localRun->fEdeposit;
141 fCytoEdeposit += localRun->fCytoEdeposit; << 116 fEdeposit2 += localRun->fEdeposit2;
142 fCytoEdeposit2 += localRun->fCytoEdeposit2; << 117 fTrackLen += localRun->fTrackLen;
143 fNuclEdeposit += localRun->fNuclEdeposit; << 118 fTrackLen2 += localRun->fTrackLen2;
144 fNuclEdeposit2 += localRun->fNuclEdeposit2; << 119 fProjRange += localRun->fProjRange;
145 <<
146 fTrackLen += localRun->fTrackLen; <<
147 fTrackLen2 += localRun->fTrackLen2; <<
148 fProjRange += localRun->fProjRange; <<
149 fProjRange2 += localRun->fProjRange2; 120 fProjRange2 += localRun->fProjRange2;
150 fNbOfSteps += localRun->fNbOfSteps; << 121 fNbOfSteps += localRun->fNbOfSteps ;
151 fNbOfSteps2 += localRun->fNbOfSteps2; 122 fNbOfSteps2 += localRun->fNbOfSteps2;
152 fStepSize += localRun->fStepSize; << 123 fStepSize += localRun->fStepSize;
153 fStepSize2 += localRun->fStepSize2; << 124 fStepSize2 += localRun->fStepSize2;
154 125
155 G4Run::Merge(run); << 126 G4Run::Merge(run);
156 } << 127 }
157 128
158 //....oooOO0OOooo........oooOO0OOooo........oo 129 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
159 130
160 void Run::EndOfRun() << 131 void Run::EndOfRun()
161 { 132 {
162 std::ios::fmtflags mode = G4cout.flags(); 133 std::ios::fmtflags mode = G4cout.flags();
163 G4cout.setf(std::ios::fixed, std::ios::float << 134 G4cout.setf(std::ios::fixed,std::ios::floatfield);
164 G4int prec = G4cout.precision(2); 135 G4int prec = G4cout.precision(2);
165 << 136
166 // Run conditions << 137 //run conditions
167 << 138 //
>> 139 G4Material* material = fDetector->GetAbsorMaterial();
>> 140 G4double density = material->GetDensity();
168 G4String partName = fParticle->GetParticleNa 141 G4String partName = fParticle->GetParticleName();
169 << 142
170 G4cout << "\n ======================== run s << 143 G4cout << "\n ======================== run summary =====================\n";
171 G4cout << "\n The run is " << numberOfEvent << 144 G4cout
172 << G4BestUnit(fEkin, "Energy") << G4e << 145 << "\n The run is " << numberOfEvent << " "<< partName << " of "
>> 146 << G4BestUnit(fEkin,"Energy") << " through a sphere of radius "
>> 147 << G4BestUnit(fDetector->GetAbsorRadius(),"Length") << "of "
>> 148 << material->GetName() << " (density: "
>> 149 << G4BestUnit(density,"Volumic Mass") << ")" << G4endl;
173 150
174 if (numberOfEvent == 0) { 151 if (numberOfEvent == 0) {
175 G4cout.setf(mode, std::ios::floatfield); << 152 G4cout.setf(mode,std::ios::floatfield);
176 G4cout.precision(prec); << 153 G4cout.precision(prec);
177 return; 154 return;
178 } 155 }
179 << 156
180 // Compute S-value for cytoplasm (C<-C) << 157 fEdeposit /= numberOfEvent; fEdeposit2 /= numberOfEvent;
181 << 158 G4double rms = fEdeposit2 - fEdeposit*fEdeposit;
182 fCytoEdeposit /= numberOfEvent; << 159 if (rms>0.) rms = std::sqrt(rms); else rms = 0.;
183 fCytoEdeposit2 /= numberOfEvent; << 160
184 G4double rmsCyto = fCytoEdeposit2 - fCytoEde << 161 G4cout.precision(3);
185 if (rmsCyto > 0.) << 162 G4cout
186 rmsCyto = std::sqrt(rmsCyto); << 163 << "\n Total Energy deposited = " << G4BestUnit(fEdeposit,"Energy")
187 else << 164 << " +- " << G4BestUnit( rms,"Energy")
188 rmsCyto = 0.; << 165 << G4endl;
189 << 166
190 G4cout.precision(3); << 167 G4double sValue=fEdeposit/fDetector->GetAbsorMass();
191 G4cout << "\n Total Energy deposited in cyto << 168 G4double rmsSValue=rms/fDetector->GetAbsorMass();
192 << " +- " << G4BestUnit(rmsCyto, "Ene << 169
193 << 170 G4cout.precision(3);
194 G4double sValueCyto = fCytoEdeposit / fDetec << 171 G4cout
195 G4double rmsSValueCyto = rmsCyto / fDetector << 172 << "\n S value = " << sValue/gray << " Gy/Bq.s "
196 << 173 << " +- " << rmsSValue/gray
197 G4cout.precision(3); << 174 << " Gy/Bq.s "
198 G4cout << "\n S value for cytoplasm (C<-C) = << 175 << G4endl;
199 << " +- " << rmsSValueCyto / gray << << 176
200 << 177 //compute track length of primary track
201 // Compute S-value for nucleus (N<-C) << 178 //
202 << 179 fTrackLen /= numberOfEvent; fTrackLen2 /= numberOfEvent;
203 fNuclEdeposit /= numberOfEvent; << 180 rms = fTrackLen2 - fTrackLen*fTrackLen;
204 fNuclEdeposit2 /= numberOfEvent; << 181 if (rms>0.) rms = std::sqrt(rms); else rms = 0.;
205 G4double rmsNucl = fNuclEdeposit2 - fNuclEde << 182
206 if (rmsNucl > 0.) << 183 G4cout.precision(3);
207 rmsNucl = std::sqrt(rmsNucl); << 184 G4cout
208 else << 185 << "\n Track length of primary track = " << G4BestUnit(fTrackLen,"Length")
209 rmsNucl = 0.; << 186 << " +- " << G4BestUnit( rms,"Length");
210 << 187
211 G4cout.precision(3); << 188 //compute projected range of primary track
212 G4cout << "\n Total Energy deposited in nucl << 189 //
213 << " +- " << G4BestUnit(rmsNucl, "Ene << 190 fProjRange /= numberOfEvent; fProjRange2 /= numberOfEvent;
214 << 191 rms = fProjRange2 - fProjRange*fProjRange;
215 G4double sValueNucl = fNuclEdeposit / fDetec << 192 if (rms>0.) rms = std::sqrt(rms); else rms = 0.;
216 G4double rmsSValueNucl = rmsNucl / fDetector << 193
217 << 194 G4cout
218 G4cout.precision(3); << 195 << "\n Projected range = " << G4BestUnit(fProjRange,"Length")
219 G4cout << "\n S value for nucleus (N<-C) = " << 196 << " +- " << G4BestUnit( rms,"Length")
220 << " +- " << rmsSValueNucl / gray << << 197 << G4endl;
221 << 198
222 // Compute track length of primary track << 199 //nb of steps and step size of primary track
223 << 200 //
224 fTrackLen /= numberOfEvent; <<
225 fTrackLen2 /= numberOfEvent; <<
226 G4double rms = fTrackLen2 - fTrackLen * fTra <<
227 if (rms > 0.) <<
228 rms = std::sqrt(rms); <<
229 else <<
230 rms = 0.; <<
231 <<
232 G4cout.precision(3); <<
233 G4cout << "\n Track length of primary track <<
234 << G4BestUnit(rms, "Length"); <<
235 <<
236 // Compute projected range of primary track <<
237 <<
238 fProjRange /= numberOfEvent; <<
239 fProjRange2 /= numberOfEvent; <<
240 rms = fProjRange2 - fProjRange * fProjRange; <<
241 if (rms > 0.) <<
242 rms = std::sqrt(rms); <<
243 else <<
244 rms = 0.; <<
245 <<
246 G4cout << "\n Projected range <<
247 << G4BestUnit(rms, "Length") << G4end <<
248 <<
249 // Nb of steps and step size of primary trac <<
250 <<
251 G4double dNofEvents = double(numberOfEvent); 201 G4double dNofEvents = double(numberOfEvent);
252 G4double fNbSteps = fNbOfSteps / dNofEvents, << 202 G4double fNbSteps = fNbOfSteps/dNofEvents,
253 rms = fNbSteps2 - fNbSteps * fNbSteps; << 203 fNbSteps2 = fNbOfSteps2/dNofEvents;
254 if (rms > 0.) << 204 rms = fNbSteps2 - fNbSteps*fNbSteps;
255 rms = std::sqrt(rms); << 205 if (rms>0.) rms = std::sqrt(rms); else rms = 0.;
256 else << 206
257 rms = 0.; << 207 G4cout.precision(2);
258 << 208 G4cout << "\n Nb of steps of primary track = " << fNbSteps << " +- " << rms
259 G4cout.precision(2); << 209 << G4endl;
260 G4cout << "\n Nb of steps of primary track << 210
261 << 211 fStepSize /= numberOfEvent; fStepSize2 /= numberOfEvent;
262 fStepSize /= numberOfEvent; << 212 rms = fStepSize2 - fStepSize*fStepSize;
263 fStepSize2 /= numberOfEvent; << 213 if (rms>0.) rms = std::sqrt(rms); else rms = 0.;
264 rms = fStepSize2 - fStepSize * fStepSize; << 214
265 if (rms > 0.) << 215 G4cout.precision(3);
266 rms = std::sqrt(rms); << 216 G4cout
267 else << 217 << "\n Step size = " << G4BestUnit(fStepSize,"Length")
268 rms = 0.; << 218 << " +- " << G4BestUnit( rms,"Length")
269 << 219 << G4endl;
270 G4cout.precision(3); <<
271 G4cout << "\n Step size <<
272 << G4BestUnit(rms, "Length") << G4end <<
273 <<
274 // Normalize histograms of longitudinal ener <<
275 220
>> 221 // normalize histograms of longitudinal energy profile
>> 222 //
276 G4AnalysisManager* analysisManager = G4Analy 223 G4AnalysisManager* analysisManager = G4AnalysisManager::Instance();
277 G4int ih = 1; 224 G4int ih = 1;
278 G4double binWidth = analysisManager->GetH1Wi 225 G4double binWidth = analysisManager->GetH1Width(ih);
279 G4double fac = (1. / (numberOfEvent * binWid << 226 G4double fac = (1./(numberOfEvent*binWidth))*(mm/MeV);
280 analysisManager->ScaleH1(ih, fac); << 227 analysisManager->ScaleH1(ih,fac);
281 << 228
282 // Reset default formats << 229 // reset default formats
283 << 230 G4cout.setf(mode,std::ios::floatfield);
284 G4cout.setf(mode, std::ios::floatfield); <<
285 G4cout.precision(prec); 231 G4cout.precision(prec);
286 << 232
287 // Output file << 233 //output file
288 << 234 FILE *myFile;
289 FILE* myFile; << 235 myFile = fopen ("s.txt","a");
290 myFile = fopen("s.txt", "a"); << 236 fprintf (myFile, "%e %e %e %e \n", fDetector->GetAbsorRadius()/nm,fEkin/eV,
291 fprintf(myFile, "%e %e %e %e %e %e %e \n", f << 237 sValue/gray, rmsSValue/gray );
292 fDetector->GetCytoThickness() / nm, << 238 fclose (myFile);
293 sValueNucl / gray, rmsSValueNucl / g << 239
294 fclose(myFile); <<
295 } 240 }
>> 241
>> 242 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
296 243