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Geant4/examples/extended/medical/dna/slowing/src/Run.cc

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Diff markup

Differences between /examples/extended/medical/dna/slowing/src/Run.cc (Version 11.3.0) and /examples/extended/medical/dna/slowing/src/Run.cc (Version 11.2)


  1 //                                                  1 //
  2 // *******************************************      2 // ********************************************************************
  3 // * License and Disclaimer                         3 // * License and Disclaimer                                           *
  4 // *                                                4 // *                                                                  *
  5 // * The  Geant4 software  is  copyright of th      5 // * The  Geant4 software  is  copyright of the Copyright Holders  of *
  6 // * the Geant4 Collaboration.  It is provided      6 // * the Geant4 Collaboration.  It is provided  under  the terms  and *
  7 // * conditions of the Geant4 Software License      7 // * conditions of the Geant4 Software License,  included in the file *
  8 // * LICENSE and available at  http://cern.ch/      8 // * LICENSE and available at  http://cern.ch/geant4/license .  These *
  9 // * include a list of copyright holders.           9 // * include a list of copyright holders.                             *
 10 // *                                               10 // *                                                                  *
 11 // * Neither the authors of this software syst     11 // * Neither the authors of this software system, nor their employing *
 12 // * institutes,nor the agencies providing fin     12 // * institutes,nor the agencies providing financial support for this *
 13 // * work  make  any representation or  warran     13 // * work  make  any representation or  warranty, express or implied, *
 14 // * regarding  this  software system or assum     14 // * regarding  this  software system or assume any liability for its *
 15 // * use.  Please see the license in the file      15 // * use.  Please see the license in the file  LICENSE  and URL above *
 16 // * for the full disclaimer and the limitatio     16 // * for the full disclaimer and the limitation of liability.         *
 17 // *                                               17 // *                                                                  *
 18 // * This  code  implementation is the result      18 // * This  code  implementation is the result of  the  scientific and *
 19 // * technical work of the GEANT4 collaboratio     19 // * technical work of the GEANT4 collaboration.                      *
 20 // * By using,  copying,  modifying or  distri     20 // * By using,  copying,  modifying or  distributing the software (or *
 21 // * any work based  on the software)  you  ag     21 // * any work based  on the software)  you  agree  to acknowledge its *
 22 // * use  in  resulting  scientific  publicati     22 // * use  in  resulting  scientific  publications,  and indicate your *
 23 // * acceptance of all terms of the Geant4 Sof     23 // * acceptance of all terms of the Geant4 Software license.          *
 24 // *******************************************     24 // ********************************************************************
 25 //                                                 25 //
 26 // This example is provided by the Geant4-DNA      26 // This example is provided by the Geant4-DNA collaboration
 27 // Any report or published results obtained us <<  27 // Any report or published results obtained using the Geant4-DNA software 
 28 // shall cite the following Geant4-DNA collabo     28 // shall cite the following Geant4-DNA collaboration publications:
 29 // Med. Phys. 45 (2018) e722-e739              << 
 30 // Phys. Med. 31 (2015) 861-874                    29 // Phys. Med. 31 (2015) 861-874
 31 // Med. Phys. 37 (2010) 4692-4708                  30 // Med. Phys. 37 (2010) 4692-4708
 32 // Int. J. Model. Simul. Sci. Comput. 1 (2010) << 
 33 //                                             << 
 34 // The Geant4-DNA web site is available at htt     31 // The Geant4-DNA web site is available at http://geant4-dna.org
 35 //                                                 32 //
                                                   >>  33 //
 36 /// \file medical/dna/slowing/src/Run.cc           34 /// \file medical/dna/slowing/src/Run.cc
 37 /// \brief Implementation of the Run class         35 /// \brief Implementation of the Run class
 38                                                    36 
 39 #include "Run.hh"                                  37 #include "Run.hh"
 40                                                <<  38 #include "DetectorConstruction.hh"
 41 #include "HistoManager.hh"                         39 #include "HistoManager.hh"
 42 #include "PrimaryGeneratorAction.hh"               40 #include "PrimaryGeneratorAction.hh"
 43                                                    41 
 44 #include "G4Material.hh"                           42 #include "G4Material.hh"
 45 #include "G4SystemOfUnits.hh"                      43 #include "G4SystemOfUnits.hh"
 46 #include "G4UnitsTable.hh"                         44 #include "G4UnitsTable.hh"
 47                                                    45 
 48 //....oooOO0OOooo........oooOO0OOooo........oo     46 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
 49                                                    47 
 50 Run::Run(const DetectorConstruction* detector)     48 Run::Run(const DetectorConstruction* detector)
 51   : G4Run(), fDetector(detector), fParticle(0) <<  49 : G4Run(),
                                                   >>  50   fDetector(detector),
                                                   >>  51   fParticle(0), fEkin(0.),  
                                                   >>  52   fEdeposit(0.),  fEdeposit2(0.)
 52 {}                                                 53 {}
 53                                                    54 
 54 //....oooOO0OOooo........oooOO0OOooo........oo     55 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
 55                                                    56 
 56 Run::~Run() {}                                 <<  57 Run::~Run()
                                                   >>  58 {}
 57                                                    59 
 58 //....oooOO0OOooo........oooOO0OOooo........oo     60 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
 59                                                    61 
 60 void Run::SetPrimary(G4ParticleDefinition* par <<  62 void Run::SetPrimary (G4ParticleDefinition* particle, G4double energy)
 61 {                                              <<  63 { 
 62   fParticle = particle;                            64   fParticle = particle;
 63   fEkin = energy;                              <<  65   fEkin     = energy;
 64 }                                                  66 }
 65                                                    67 
 66 //....oooOO0OOooo........oooOO0OOooo........oo     68 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
 67                                                    69 
 68 void Run::AddEdep(G4double e)                  <<  70 void Run::AddEdep (G4double e)        
 69 {                                                  71 {
 70   fEdeposit += e;                              <<  72   fEdeposit  += e;
 71   fEdeposit2 += e * e;                         <<  73   fEdeposit2 += e*e;
 72 }                                                  74 }
 73                                                    75 
 74 //....oooOO0OOooo........oooOO0OOooo........oo     76 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
 75                                                    77 
 76 void Run::Merge(const G4Run* run)                  78 void Run::Merge(const G4Run* run)
 77 {                                                  79 {
 78   const Run* localRun = static_cast<const Run*     80   const Run* localRun = static_cast<const Run*>(run);
 79                                                <<  81   
 80   // Pass information about primary particle   <<  82   // pass information about primary particle
 81   fParticle = localRun->fParticle;                 83   fParticle = localRun->fParticle;
 82   fEkin = localRun->fEkin;                     <<  84   fEkin     = localRun->fEkin;
 83                                                    85 
 84   // Accumulate sums                           <<  86   // accumulate sums
 85   fEdeposit += localRun->fEdeposit;            <<  87   fEdeposit   += localRun->fEdeposit;
 86   fEdeposit2 += localRun->fEdeposit2;          <<  88   fEdeposit2  += localRun->fEdeposit2;
 87                                                    89 
 88   G4Run::Merge(run);                           <<  90   G4Run::Merge(run); 
 89 }                                              <<  91 } 
 90                                                    92 
 91 //....oooOO0OOooo........oooOO0OOooo........oo     93 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
 92                                                    94 
 93 void Run::EndOfRun()                           <<  95 void Run::EndOfRun() 
 94 {                                                  96 {
 95   std::ios::fmtflags mode = G4cout.flags();        97   std::ios::fmtflags mode = G4cout.flags();
 96   G4cout.setf(std::ios::fixed, std::ios::float <<  98   G4cout.setf(std::ios::fixed,std::ios::floatfield);
 97   G4int prec = G4cout.precision(2);                99   G4int prec = G4cout.precision(2);
 98                                                << 100   
 99   // Run conditions                            << 101   //run conditions  
                                                   >> 102   //
100   G4String partName = fParticle->GetParticleNa    103   G4String partName = fParticle->GetParticleName();
101   G4Material* material = fDetector->GetAbsorMa    104   G4Material* material = fDetector->GetAbsorMaterial();
102   G4double density = material->GetDensity();   << 105   G4double density  = material->GetDensity();       
103                                                << 106     
104   G4cout << "\n ======================== run s << 107   G4cout << "\n ======================== run summary =====================\n";  
105   G4cout << "\n The run is " << numberOfEvent  << 108   G4cout 
106          << G4BestUnit(fEkin, "Energy") << " t << 109     << "\n The run is " << numberOfEvent << " "<< partName << " of "
107          << " (density: " << G4BestUnit(densit << 110     << G4BestUnit(fEkin,"Energy") << " through a volume of "
108          << G4BestUnit(fDetector->GetAbsorMass << 111     << material->GetName() << " (density: " 
                                                   >> 112     << G4BestUnit(density,"Volumic Mass") << ") of mass " 
                                                   >> 113     << G4BestUnit(fDetector->GetAbsorMass(),"Mass") 
                                                   >> 114     << G4endl;    
109                                                   115 
110   if (numberOfEvent == 0) {                       116   if (numberOfEvent == 0) {
111     G4cout.setf(mode, std::ios::floatfield);   << 117     G4cout.setf(mode,std::ios::floatfield);
112     G4cout.precision(prec);                    << 118     G4cout.precision(prec);  
113     return;                                       119     return;
114   }                                               120   }
115                                                << 121       
116   G4cout.precision(3);                         << 122   G4cout.precision(3);       
117   G4cout << "\n Total Energy deposited         << 123   G4cout 
118                                                << 124     << "\n Total Energy deposited        = " << G4BestUnit(fEdeposit,"Energy")
                                                   >> 125     << G4endl;
                                                   >> 126                     
119   /*                                              127   /*
120   G4double dose=fEdeposit/fDetector->GetAbsorM    128   G4double dose=fEdeposit/fDetector->GetAbsorMass();
121   G4double rmsDose=rms/fDetector->GetAbsorMass    129   G4double rmsDose=rms/fDetector->GetAbsorMass();
122                                                << 130   
123   G4cout.precision(3);                         << 131   G4cout.precision(3);       
124   G4cout                                       << 132   G4cout 
125     << "\n Dose                         = " <<    133     << "\n Dose                         = " << dose/gray << " Gy "
126     << G4endl;                                    134     << G4endl;
127   */                                              135   */
128                                                << 136               
129   G4cout << G4endl;                               137   G4cout << G4endl;
130                                                   138 
131   // Normalize histograms                      << 139   // normalize histograms
                                                   >> 140   //
132   G4AnalysisManager* analysisManager = G4Analy    141   G4AnalysisManager* analysisManager = G4AnalysisManager::Instance();
133   G4double fac = 1. / (numberOfEvent * (fEkin  << 142   G4double fac = 1./(numberOfEvent*(fEkin/eV));
134   analysisManager->ScaleH1(1, fac);            << 143   analysisManager->ScaleH1(1,fac);
135   analysisManager->ScaleH1(2, fac);            << 144   analysisManager->ScaleH1(2,fac);
136   analysisManager->ScaleH1(3, fac);            << 145   analysisManager->ScaleH1(3,fac);
                                                   >> 146     
137 }                                                 147 }
                                                   >> 148 
                                                   >> 149 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
138                                                   150