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1 // 1 //
2 // ******************************************* 2 // ********************************************************************
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4 // * 4 // * *
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17 // * 17 // * *
18 // * This code implementation is the result 18 // * This code implementation is the result of the scientific and *
19 // * technical work of the GEANT4 collaboratio 19 // * technical work of the GEANT4 collaboration. *
20 // * By using, copying, modifying or distri 20 // * By using, copying, modifying or distributing the software (or *
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24 // ******************************************* 24 // ********************************************************************
25 // 25 //
26 // This example is provided by the Geant4-DNA 26 // This example is provided by the Geant4-DNA collaboration
27 // Any report or published results obtained us 27 // Any report or published results obtained using the Geant4-DNA software
28 // shall cite the following Geant4-DNA collabo 28 // shall cite the following Geant4-DNA collaboration publication:
29 // Med. Phys. 37 (2010) 4692-4708 29 // Med. Phys. 37 (2010) 4692-4708
30 // Delage et al. PDB4DNA: implementation of DN 30 // Delage et al. PDB4DNA: implementation of DNA geometry from the Protein Data
31 // Bank (PDB) description for 31 // Bank (PDB) description for Geant4-DNA Monte-Carlo
32 // simulations (submitted to 32 // simulations (submitted to Comput. Phys. Commun.)
33 // The Geant4-DNA web site is available at htt 33 // The Geant4-DNA web site is available at http://geant4-dna.org
34 // 34 //
35 // 35 //
36 /// \file EventAction.cc 36 /// \file EventAction.cc
37 /// \brief Implementation of the EventAction c 37 /// \brief Implementation of the EventAction class
38 38
39 #include "EventAction.hh" 39 #include "EventAction.hh"
40 40
>> 41 #include "Analysis.hh"
41 #include "EventActionMessenger.hh" 42 #include "EventActionMessenger.hh"
42 <<
43 #include "G4AnalysisManager.hh" <<
44 #include "G4Event.hh" 43 #include "G4Event.hh"
45 #include "G4SystemOfUnits.hh" <<
46 #include "G4UnitsTable.hh" 44 #include "G4UnitsTable.hh"
>> 45 #include "G4SystemOfUnits.hh"
47 #include "Randomize.hh" 46 #include "Randomize.hh"
48 47
49 #include <algorithm> 48 #include <algorithm>
50 49
51 //....oooOO0OOooo........oooOO0OOooo........oo 50 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
52 51
53 EventAction::EventAction() : G4UserEventAction << 52 EventAction::EventAction():G4UserEventAction()
54 { 53 {
55 // default parameter values << 54 //default parameter values
56 // 55 //
57 fThresEdepForSSB = 8.22 * eV; << 56 fThresEdepForSSB=8.22*eV;
58 fThresDistForDSB = 10; << 57 fThresDistForDSB=10;
59 fTotalEnergyDeposit = 0; << 58 fTotalEnergyDeposit=0;
60 59
61 // create commands << 60 //create commands
62 // 61 //
63 fpEventMessenger = new EventActionMessenger( 62 fpEventMessenger = new EventActionMessenger(this);
64 } 63 }
65 64
66 //....oooOO0OOooo........oooOO0OOooo........oo 65 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
67 66
68 EventAction::~EventAction() 67 EventAction::~EventAction()
69 { 68 {
70 delete fpEventMessenger; 69 delete fpEventMessenger;
71 } 70 }
72 71
73 //....oooOO0OOooo........oooOO0OOooo........oo 72 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
74 73
75 void EventAction::BeginOfEventAction(const G4E << 74 void EventAction::BeginOfEventAction( const G4Event*)
76 { 75 {
77 // Initialization of parameters 76 // Initialization of parameters
78 // 77 //
79 fTotalEnergyDeposit = 0.; << 78 fTotalEnergyDeposit=0.;
80 fEdepStrand1.clear(); 79 fEdepStrand1.clear();
81 fEdepStrand2.clear(); 80 fEdepStrand2.clear();
82 } 81 }
83 82
84 //....oooOO0OOooo........oooOO0OOooo........oo 83 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
85 84
86 void EventAction::EndOfEventAction(const G4Eve << 85 void EventAction::EndOfEventAction( const G4Event*)
87 { 86 {
88 // At the end of an event, compute the numbe 87 // At the end of an event, compute the number of strand breaks
89 // 88 //
90 G4int sb[2] = {0, 0}; << 89 G4int sb[2] = {0,0};
91 ComputeStrandBreaks(sb); 90 ComputeStrandBreaks(sb);
92 // Fill histograms 91 // Fill histograms
93 // 92 //
94 G4AnalysisManager* analysisManager = G4Analy 93 G4AnalysisManager* analysisManager = G4AnalysisManager::Instance();
95 94
96 if (fTotalEnergyDeposit > 0.) { << 95 if ( fTotalEnergyDeposit>0. )
97 analysisManager->FillH1(1, fTotalEnergyDep << 96 {
98 } << 97 analysisManager->FillH1(1,fTotalEnergyDeposit);
99 if (sb[0] > 0) { << 98 }
100 analysisManager->FillH1(2, sb[0]); << 99 if ( sb[0]>0 )
101 } << 100 {
102 if (sb[1] > 0) { << 101 analysisManager->FillH1(2,sb[0]);
103 analysisManager->FillH1(3, sb[1]); << 102 }
>> 103 if ( sb[1]>0 )
>> 104 {
>> 105 analysisManager->FillH1(3,sb[1]);
104 } 106 }
105 } 107 }
106 108
107 //....oooOO0OOooo........oooOO0OOooo........oo 109 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
108 110
109 void EventAction::ComputeStrandBreaks(G4int* s 111 void EventAction::ComputeStrandBreaks(G4int* sb)
110 { 112 {
111 // sb quantities 113 // sb quantities
112 // 114 //
113 G4int ssb1 = 0; << 115 G4int ssb1=0;
114 G4int ssb2 = 0; << 116 G4int ssb2=0;
115 G4int dsb = 0; << 117 G4int dsb=0;
116 118
117 // nucleotide id and energy deposit for each 119 // nucleotide id and energy deposit for each strand
118 G4int nucl1; 120 G4int nucl1;
119 G4int nucl2; 121 G4int nucl2;
120 G4double edep1; 122 G4double edep1;
121 G4double edep2; 123 G4double edep2;
122 124
123 // Read strand1 << 125 //Read strand1
124 // 126 //
125 while (!fEdepStrand1.empty()) { << 127 while ( !fEdepStrand1.empty() )
>> 128 {
126 nucl1 = fEdepStrand1.begin()->first; 129 nucl1 = fEdepStrand1.begin()->first;
127 edep1 = fEdepStrand1.begin()->second; 130 edep1 = fEdepStrand1.begin()->second;
128 fEdepStrand1.erase(fEdepStrand1.begin()); << 131 fEdepStrand1.erase( fEdepStrand1.begin() );
129 132
130 // SSB in strand1 133 // SSB in strand1
131 // 134 //
132 if (edep1 >= fThresEdepForSSB / eV) { << 135 if ( edep1 >= fThresEdepForSSB/eV )
>> 136 {
133 ssb1++; 137 ssb1++;
134 } 138 }
135 139
136 // Look at strand2 140 // Look at strand2
137 // 141 //
138 if (!fEdepStrand2.empty()) { << 142 if ( !fEdepStrand2.empty() )
139 do { << 143 {
>> 144 do
>> 145 {
140 nucl2 = fEdepStrand2.begin()->first; 146 nucl2 = fEdepStrand2.begin()->first;
141 edep2 = fEdepStrand2.begin()->second; 147 edep2 = fEdepStrand2.begin()->second;
142 if (edep2 >= fThresEdepForSSB / eV) { << 148 if ( edep2 >= fThresEdepForSSB/eV )
>> 149 {
143 ssb2++; 150 ssb2++;
144 } 151 }
145 fEdepStrand2.erase(fEdepStrand2.begin( << 152 fEdepStrand2.erase( fEdepStrand2.begin() );
146 } while (((nucl1 - nucl2) > fThresDistFo << 153 } while ( ((nucl1-nucl2)>fThresDistForDSB) && (!fEdepStrand2.empty()) );
147 154
148 // no dsb 155 // no dsb
149 // 156 //
150 if (nucl2 - nucl1 > fThresDistForDSB) { << 157 if ( nucl2-nucl1 > fThresDistForDSB )
151 fEdepStrand2[nucl2] = edep2; << 158 {
152 if (edep2 >= fThresEdepForSSB / eV) { << 159 fEdepStrand2[nucl2]=edep2;
>> 160 if ( edep2 >= fThresEdepForSSB/eV )
>> 161 {
153 ssb2--; 162 ssb2--;
154 } 163 }
155 } 164 }
156 165
157 // one dsb 166 // one dsb
158 // 167 //
159 if (std::abs(nucl2 - nucl1) <= fThresDis << 168 if ( std::abs(nucl2-nucl1) <= fThresDistForDSB )
160 if ((edep2 >= fThresEdepForSSB / eV) & << 169 {
>> 170 if ( ( edep2 >= fThresEdepForSSB/eV ) &&
>> 171 ( edep1 >= fThresEdepForSSB/eV ) )
>> 172 {
161 ssb1--; 173 ssb1--;
162 ssb2--; 174 ssb2--;
163 dsb++; 175 dsb++;
164 } 176 }
165 } 177 }
166 } 178 }
167 } 179 }
168 180
169 // End with not processed data 181 // End with not processed data
170 // 182 //
171 while (!fEdepStrand1.empty()) { << 183 while ( !fEdepStrand1.empty() )
>> 184 {
172 nucl1 = fEdepStrand1.begin()->first; 185 nucl1 = fEdepStrand1.begin()->first;
173 edep1 = fEdepStrand1.begin()->second; 186 edep1 = fEdepStrand1.begin()->second;
174 if (edep1 >= fThresEdepForSSB / eV) { << 187 if ( edep1 >= fThresEdepForSSB/eV )
>> 188 {
175 ssb1++; 189 ssb1++;
176 } 190 }
177 fEdepStrand1.erase(fEdepStrand1.begin()); << 191 fEdepStrand1.erase( fEdepStrand1.begin() );
178 } 192 }
179 193
180 while (!fEdepStrand2.empty()) { << 194 while ( !fEdepStrand2.empty() )
>> 195 {
181 nucl2 = fEdepStrand2.begin()->first; 196 nucl2 = fEdepStrand2.begin()->first;
182 edep2 = fEdepStrand2.begin()->second; 197 edep2 = fEdepStrand2.begin()->second;
183 if (edep2 >= fThresEdepForSSB / eV) { << 198 if ( edep2 >= fThresEdepForSSB/eV )
>> 199 {
184 ssb2++; 200 ssb2++;
185 } 201 }
186 fEdepStrand2.erase(fEdepStrand2.begin()); << 202 fEdepStrand2.erase( fEdepStrand2.begin() );
187 } 203 }
188 204
189 sb[0] = ssb1 + ssb2; << 205 sb[0]=ssb1+ssb2;
190 sb[1] = dsb; << 206 sb[1]=dsb;
191 } 207 }
192 208