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1 // 1 //
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17 // * 17 // * *
18 // * This code implementation is the result 18 // * This code implementation is the result of the scientific and *
19 // * technical work of the GEANT4 collaboratio 19 // * technical work of the GEANT4 collaboration. *
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24 // ******************************************* 24 // ********************************************************************
25 // 25 //
26 // This example is provided by the Geant4-DNA 26 // This example is provided by the Geant4-DNA collaboration
27 // Any report or published results obtained us 27 // Any report or published results obtained using the Geant4-DNA software
28 // shall cite the following Geant4-DNA collabo 28 // shall cite the following Geant4-DNA collaboration publication:
29 // Med. Phys. 37 (2010) 4692-4708 29 // Med. Phys. 37 (2010) 4692-4708
30 // Delage et al. PDB4DNA: implementation of DN 30 // Delage et al. PDB4DNA: implementation of DNA geometry from the Protein Data
31 // Bank (PDB) description for 31 // Bank (PDB) description for Geant4-DNA Monte-Carlo
32 // simulations (submitted to 32 // simulations (submitted to Comput. Phys. Commun.)
33 // The Geant4-DNA web site is available at htt 33 // The Geant4-DNA web site is available at http://geant4-dna.org
34 // 34 //
35 // << 35 //
36 /// \file DetectorMessenger.cc 36 /// \file DetectorMessenger.cc
37 /// \brief Implementation of the DetectorMesse 37 /// \brief Implementation of the DetectorMessenger class
38 38
39 #include "DetectorMessenger.hh" 39 #include "DetectorMessenger.hh"
40 <<
41 #include "DetectorConstruction.hh" 40 #include "DetectorConstruction.hh"
42 41
>> 42 #include "G4UIdirectory.hh"
43 #include "G4UIcmdWithAString.hh" 43 #include "G4UIcmdWithAString.hh"
44 #include "G4UIcmdWithoutParameter.hh" 44 #include "G4UIcmdWithoutParameter.hh"
45 #include "G4UIdirectory.hh" <<
46 45
47 //....oooOO0OOooo........oooOO0OOooo........oo 46 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
48 47
49 DetectorMessenger::DetectorMessenger(DetectorC 48 DetectorMessenger::DetectorMessenger(DetectorConstruction* Det)
50 : G4UImessenger(), fpDetectorConstruction(De << 49 : G4UImessenger(),
51 { << 50 fpDetectorConstruction(Det)
>> 51 {
52 fpDirectory = new G4UIdirectory("/PDB4DNA/") 52 fpDirectory = new G4UIdirectory("/PDB4DNA/");
53 fpDirectory->SetGuidance("UI commands of thi 53 fpDirectory->SetGuidance("UI commands of this example");
54 54
55 fpDetDirectory = new G4UIdirectory("/PDB4DNA 55 fpDetDirectory = new G4UIdirectory("/PDB4DNA/det/");
56 fpDetDirectory->SetGuidance("Detector constr 56 fpDetDirectory->SetGuidance("Detector construction control");
57 57
58 fpLoadPdbCmd = new G4UIcmdWithAString("/PDB4 << 58 fpLoadPdbCmd = new G4UIcmdWithAString("/PDB4DNA/det/loadPDB",this);
59 fpLoadPdbCmd->SetGuidance("Load PDB file"); 59 fpLoadPdbCmd->SetGuidance("Load PDB file");
60 fpLoadPdbCmd->SetParameterName("filename", f << 60 fpLoadPdbCmd->SetParameterName("filename",false);
61 fpLoadPdbCmd->AvailableForStates(G4State_Pre 61 fpLoadPdbCmd->AvailableForStates(G4State_PreInit, G4State_Idle);
62 62
63 fpDrawAtoms = new G4UIcmdWithoutParameter("/ << 63 fpDrawAtoms = new G4UIcmdWithoutParameter("/PDB4DNA/det/drawAtoms",this);
64 fpDrawAtoms->SetGuidance("Draw atoms"); 64 fpDrawAtoms->SetGuidance("Draw atoms");
65 fpDrawAtoms->AvailableForStates(G4State_PreI 65 fpDrawAtoms->AvailableForStates(G4State_PreInit, G4State_Idle);
66 66
67 fpDrawNucleotides = new G4UIcmdWithoutParame << 67 fpDrawNucleotides = new G4UIcmdWithoutParameter(
>> 68 "/PDB4DNA/det/drawNucleotides",
>> 69 this);
68 fpDrawNucleotides->SetGuidance("Draw nucleot 70 fpDrawNucleotides->SetGuidance("Draw nucleotides with bounding sphere");
69 fpDrawNucleotides->AvailableForStates(G4Stat 71 fpDrawNucleotides->AvailableForStates(G4State_PreInit, G4State_Idle);
70 72
71 fpDrawResidues = new G4UIcmdWithoutParameter << 73 fpDrawResidues = new G4UIcmdWithoutParameter(
72 fpDrawResidues->SetGuidance( << 74 "/PDB4DNA/det/drawResidues",
73 "Draw residues inside nucleotides with sph << 75 this);
74 "linked by cylinders"); << 76 fpDrawResidues->SetGuidance("Draw residues inside nucleotides with sphere "
>> 77 "linked by cylinders");
75 fpDrawResidues->AvailableForStates(G4State_P 78 fpDrawResidues->AvailableForStates(G4State_PreInit, G4State_Idle);
76 79
77 fpBuildBoundingV = new G4UIcmdWithoutParamet << 80 fpBuildBoundingV = new G4UIcmdWithoutParameter(
>> 81 "/PDB4DNA/det/buildBoundingV",
>> 82 this);
78 fpBuildBoundingV->SetGuidance("Build molecul 83 fpBuildBoundingV->SetGuidance("Build molecule bounding volume");
79 fpBuildBoundingV->AvailableForStates(G4State 84 fpBuildBoundingV->AvailableForStates(G4State_PreInit, G4State_Idle);
80 85
81 fpDrawAtomsWithBounding = new G4UIcmdWithout << 86 fpDrawAtomsWithBounding = new G4UIcmdWithoutParameter(
>> 87 "/PDB4DNA/det/drawAtomsWithBounding",
>> 88 this);
82 fpDrawAtomsWithBounding->SetGuidance("Draw a 89 fpDrawAtomsWithBounding->SetGuidance("Draw atoms with bounding volume");
83 fpDrawAtomsWithBounding->AvailableForStates( 90 fpDrawAtomsWithBounding->AvailableForStates(G4State_PreInit, G4State_Idle);
84 91
85 fpDrawNucleotidesWithBounding = << 92 fpDrawNucleotidesWithBounding = new G4UIcmdWithoutParameter(
86 new G4UIcmdWithoutParameter("/PDB4DNA/det/ << 93 "/PDB4DNA/det/drawNucleotidesWithBounding",
>> 94 this);
87 fpDrawNucleotidesWithBounding->SetGuidance( 95 fpDrawNucleotidesWithBounding->SetGuidance(
88 "Draw nucleotides with bounding sphere and << 96 "Draw nucleotides with bounding sphere and bounding volume");
89 fpDrawNucleotidesWithBounding->AvailableForS << 97 fpDrawNucleotidesWithBounding->AvailableForStates(G4State_PreInit,
90 << 98 G4State_Idle);
91 fpDrawResiduesWithBounding = << 99
92 new G4UIcmdWithoutParameter("/PDB4DNA/det/ << 100 fpDrawResiduesWithBounding = new G4UIcmdWithoutParameter(
93 fpDrawResiduesWithBounding->SetGuidance( << 101 "/PDB4DNA/det/drawResiduesWithBounding",
94 "Draw residues inside nucleotides" << 102 this);
95 " with sphere linked by cylinders and with << 103 fpDrawResiduesWithBounding->SetGuidance("Draw residues inside nucleotides"
96 fpDrawResiduesWithBounding->AvailableForStat << 104 " with sphere linked by cylinders and with bounding volume");
>> 105 fpDrawResiduesWithBounding->AvailableForStates(
>> 106 G4State_PreInit, G4State_Idle);
97 } 107 }
98 108
99 //....oooOO0OOooo........oooOO0OOooo........oo 109 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
100 110
101 DetectorMessenger::~DetectorMessenger() 111 DetectorMessenger::~DetectorMessenger()
102 { 112 {
103 delete fpLoadPdbCmd; 113 delete fpLoadPdbCmd;
104 delete fpDrawAtoms; 114 delete fpDrawAtoms;
105 delete fpDrawNucleotides; 115 delete fpDrawNucleotides;
106 delete fpDrawResidues; 116 delete fpDrawResidues;
107 delete fpBuildBoundingV; 117 delete fpBuildBoundingV;
108 delete fpDrawAtomsWithBounding; 118 delete fpDrawAtomsWithBounding;
109 delete fpDrawNucleotidesWithBounding; 119 delete fpDrawNucleotidesWithBounding;
110 delete fpDrawResiduesWithBounding; 120 delete fpDrawResiduesWithBounding;
111 121
112 delete fpDetDirectory; 122 delete fpDetDirectory;
113 delete fpDirectory; 123 delete fpDirectory;
114 } 124 }
115 125
116 //....oooOO0OOooo........oooOO0OOooo........oo 126 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
117 127
118 void DetectorMessenger::SetNewValue(G4UIcomman << 128 void DetectorMessenger::SetNewValue(G4UIcommand* command,G4String newValue)
119 { << 129 {
120 if (command == fpLoadPdbCmd) { << 130 if( command == fpLoadPdbCmd )
>> 131 {
121 fpDetectorConstruction->LoadPDBfile(newVal 132 fpDetectorConstruction->LoadPDBfile(newValue);
122 } 133 }
123 if (command == fpDrawAtoms) { << 134 if( command == fpDrawAtoms )
>> 135 {
124 fpDetectorConstruction->DrawAtoms_(); 136 fpDetectorConstruction->DrawAtoms_();
125 } 137 }
126 if (command == fpDrawNucleotides) { << 138 if( command == fpDrawNucleotides )
>> 139 {
127 fpDetectorConstruction->DrawNucleotides_() 140 fpDetectorConstruction->DrawNucleotides_();
128 } 141 }
129 if (command == fpDrawResidues) { << 142 if( command == fpDrawResidues )
>> 143 {
130 fpDetectorConstruction->DrawResidues_(); 144 fpDetectorConstruction->DrawResidues_();
131 } 145 }
132 if (command == fpBuildBoundingV) { << 146 if( command == fpBuildBoundingV )
>> 147 {
133 fpDetectorConstruction->BuildBoundingVolum 148 fpDetectorConstruction->BuildBoundingVolume();
134 } 149 }
135 if (command == fpDrawAtomsWithBounding) { << 150 if( command == fpDrawAtomsWithBounding )
>> 151 {
136 fpDetectorConstruction->DrawAtomsWithBound 152 fpDetectorConstruction->DrawAtomsWithBounding_();
137 } 153 }
138 if (command == fpDrawNucleotidesWithBounding << 154 if( command == fpDrawNucleotidesWithBounding )
>> 155 {
139 fpDetectorConstruction->DrawNucleotidesWit 156 fpDetectorConstruction->DrawNucleotidesWithBounding_();
140 } 157 }
141 if (command == fpDrawResiduesWithBounding) { << 158 if( command == fpDrawResiduesWithBounding )
>> 159 {
142 fpDetectorConstruction->DrawResiduesWithBo 160 fpDetectorConstruction->DrawResiduesWithBounding_();
143 } 161 }
144 } 162 }
145 163