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1 // 1 //
2 // ******************************************* 2 // ********************************************************************
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4 // * 4 // * *
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17 // * 17 // * *
18 // * This code implementation is the result 18 // * This code implementation is the result of the scientific and *
19 // * technical work of the GEANT4 collaboratio 19 // * technical work of the GEANT4 collaboration. *
20 // * By using, copying, modifying or distri 20 // * By using, copying, modifying or distributing the software (or *
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24 // ******************************************* 24 // ********************************************************************
25 // 25 //
26 // This example is provided by the Geant4-DNA 26 // This example is provided by the Geant4-DNA collaboration
27 // Any report or published results obtained us 27 // Any report or published results obtained using the Geant4-DNA software
28 // shall cite the following Geant4-DNA collabo 28 // shall cite the following Geant4-DNA collaboration publication:
29 // Med. Phys. 37 (2010) 4692-4708 29 // Med. Phys. 37 (2010) 4692-4708
30 // Delage et al. PDB4DNA: implementation of DN 30 // Delage et al. PDB4DNA: implementation of DNA geometry from the Protein Data
31 // Bank (PDB) description for 31 // Bank (PDB) description for Geant4-DNA Monte-Carlo
32 // simulations (submitted to 32 // simulations (submitted to Comput. Phys. Commun.)
33 // The Geant4-DNA web site is available at htt 33 // The Geant4-DNA web site is available at http://geant4-dna.org
34 // 34 //
35 // << 35 // $Id$
>> 36 //
36 /// \file DetectorMessenger.cc 37 /// \file DetectorMessenger.cc
37 /// \brief Implementation of the DetectorMesse 38 /// \brief Implementation of the DetectorMessenger class
38 39
39 #include "DetectorMessenger.hh" 40 #include "DetectorMessenger.hh"
40 <<
41 #include "DetectorConstruction.hh" 41 #include "DetectorConstruction.hh"
42 42
>> 43 #include "G4UIdirectory.hh"
43 #include "G4UIcmdWithAString.hh" 44 #include "G4UIcmdWithAString.hh"
44 #include "G4UIcmdWithoutParameter.hh" 45 #include "G4UIcmdWithoutParameter.hh"
45 #include "G4UIdirectory.hh" <<
46 46
47 //....oooOO0OOooo........oooOO0OOooo........oo 47 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
48 48
49 DetectorMessenger::DetectorMessenger(DetectorC 49 DetectorMessenger::DetectorMessenger(DetectorConstruction* Det)
50 : G4UImessenger(), fpDetectorConstruction(De << 50 : G4UImessenger(),
51 { << 51 fpDetectorConstruction(Det)
>> 52 {
52 fpDirectory = new G4UIdirectory("/PDB4DNA/") 53 fpDirectory = new G4UIdirectory("/PDB4DNA/");
53 fpDirectory->SetGuidance("UI commands of thi 54 fpDirectory->SetGuidance("UI commands of this example");
54 55
55 fpDetDirectory = new G4UIdirectory("/PDB4DNA 56 fpDetDirectory = new G4UIdirectory("/PDB4DNA/det/");
56 fpDetDirectory->SetGuidance("Detector constr 57 fpDetDirectory->SetGuidance("Detector construction control");
57 58
58 fpLoadPdbCmd = new G4UIcmdWithAString("/PDB4 << 59 fpLoadPdbCmd = new G4UIcmdWithAString("/PDB4DNA/det/loadPDB",this);
59 fpLoadPdbCmd->SetGuidance("Load PDB file"); 60 fpLoadPdbCmd->SetGuidance("Load PDB file");
60 fpLoadPdbCmd->SetParameterName("filename", f << 61 fpLoadPdbCmd->SetParameterName("filename",false);
61 fpLoadPdbCmd->AvailableForStates(G4State_Pre 62 fpLoadPdbCmd->AvailableForStates(G4State_PreInit, G4State_Idle);
62 63
63 fpDrawAtoms = new G4UIcmdWithoutParameter("/ << 64 fpDrawAtoms = new G4UIcmdWithoutParameter("/PDB4DNA/det/drawAtoms",this);
64 fpDrawAtoms->SetGuidance("Draw atoms"); 65 fpDrawAtoms->SetGuidance("Draw atoms");
65 fpDrawAtoms->AvailableForStates(G4State_PreI 66 fpDrawAtoms->AvailableForStates(G4State_PreInit, G4State_Idle);
66 67
67 fpDrawNucleotides = new G4UIcmdWithoutParame << 68 fpDrawNucleotides = new G4UIcmdWithoutParameter(
>> 69 "/PDB4DNA/det/drawNucleotides",
>> 70 this);
68 fpDrawNucleotides->SetGuidance("Draw nucleot 71 fpDrawNucleotides->SetGuidance("Draw nucleotides with bounding sphere");
69 fpDrawNucleotides->AvailableForStates(G4Stat 72 fpDrawNucleotides->AvailableForStates(G4State_PreInit, G4State_Idle);
70 73
71 fpDrawResidues = new G4UIcmdWithoutParameter << 74 fpDrawResidues = new G4UIcmdWithoutParameter(
72 fpDrawResidues->SetGuidance( << 75 "/PDB4DNA/det/drawResidues",
73 "Draw residues inside nucleotides with sph << 76 this);
74 "linked by cylinders"); << 77 fpDrawResidues->SetGuidance("Draw residues inside nucleotides with sphere "
>> 78 "linked by cylinders");
75 fpDrawResidues->AvailableForStates(G4State_P 79 fpDrawResidues->AvailableForStates(G4State_PreInit, G4State_Idle);
76 80
77 fpBuildBoundingV = new G4UIcmdWithoutParamet << 81 fpBuildBoundingV = new G4UIcmdWithoutParameter(
>> 82 "/PDB4DNA/det/buildBoundingV",
>> 83 this);
78 fpBuildBoundingV->SetGuidance("Build molecul 84 fpBuildBoundingV->SetGuidance("Build molecule bounding volume");
79 fpBuildBoundingV->AvailableForStates(G4State 85 fpBuildBoundingV->AvailableForStates(G4State_PreInit, G4State_Idle);
80 86
81 fpDrawAtomsWithBounding = new G4UIcmdWithout << 87 fpDrawAtomsWithBounding = new G4UIcmdWithoutParameter(
>> 88 "/PDB4DNA/det/drawAtomsWithBounding",
>> 89 this);
82 fpDrawAtomsWithBounding->SetGuidance("Draw a 90 fpDrawAtomsWithBounding->SetGuidance("Draw atoms with bounding volume");
83 fpDrawAtomsWithBounding->AvailableForStates( 91 fpDrawAtomsWithBounding->AvailableForStates(G4State_PreInit, G4State_Idle);
84 92
85 fpDrawNucleotidesWithBounding = << 93 fpDrawNucleotidesWithBounding = new G4UIcmdWithoutParameter(
86 new G4UIcmdWithoutParameter("/PDB4DNA/det/ << 94 "/PDB4DNA/det/drawNucleotidesWithBounding",
>> 95 this);
87 fpDrawNucleotidesWithBounding->SetGuidance( 96 fpDrawNucleotidesWithBounding->SetGuidance(
88 "Draw nucleotides with bounding sphere and << 97 "Draw nucleotides with bounding sphere and bounding volume");
89 fpDrawNucleotidesWithBounding->AvailableForS << 98 fpDrawNucleotidesWithBounding->AvailableForStates(G4State_PreInit,
90 << 99 G4State_Idle);
91 fpDrawResiduesWithBounding = << 100
92 new G4UIcmdWithoutParameter("/PDB4DNA/det/ << 101 fpDrawResiduesWithBounding = new G4UIcmdWithoutParameter(
93 fpDrawResiduesWithBounding->SetGuidance( << 102 "/PDB4DNA/det/drawResiduesWithBounding",
94 "Draw residues inside nucleotides" << 103 this);
95 " with sphere linked by cylinders and with << 104 fpDrawResiduesWithBounding->SetGuidance("Draw residues inside nucleotides"
96 fpDrawResiduesWithBounding->AvailableForStat << 105 " with sphere linked by cylinders and with bounding volume");
>> 106 fpDrawResiduesWithBounding->AvailableForStates(
>> 107 G4State_PreInit, G4State_Idle);
97 } 108 }
98 109
99 //....oooOO0OOooo........oooOO0OOooo........oo 110 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
100 111
101 DetectorMessenger::~DetectorMessenger() 112 DetectorMessenger::~DetectorMessenger()
102 { 113 {
103 delete fpLoadPdbCmd; 114 delete fpLoadPdbCmd;
104 delete fpDrawAtoms; 115 delete fpDrawAtoms;
105 delete fpDrawNucleotides; 116 delete fpDrawNucleotides;
106 delete fpDrawResidues; 117 delete fpDrawResidues;
107 delete fpBuildBoundingV; 118 delete fpBuildBoundingV;
108 delete fpDrawAtomsWithBounding; 119 delete fpDrawAtomsWithBounding;
109 delete fpDrawNucleotidesWithBounding; 120 delete fpDrawNucleotidesWithBounding;
110 delete fpDrawResiduesWithBounding; 121 delete fpDrawResiduesWithBounding;
111 122
112 delete fpDetDirectory; 123 delete fpDetDirectory;
113 delete fpDirectory; 124 delete fpDirectory;
114 } 125 }
115 126
116 //....oooOO0OOooo........oooOO0OOooo........oo 127 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
117 128
118 void DetectorMessenger::SetNewValue(G4UIcomman << 129 void DetectorMessenger::SetNewValue(G4UIcommand* command,G4String newValue)
119 { << 130 {
120 if (command == fpLoadPdbCmd) { << 131 if( command == fpLoadPdbCmd )
>> 132 {
121 fpDetectorConstruction->LoadPDBfile(newVal 133 fpDetectorConstruction->LoadPDBfile(newValue);
122 } 134 }
123 if (command == fpDrawAtoms) { << 135 if( command == fpDrawAtoms )
>> 136 {
124 fpDetectorConstruction->DrawAtoms_(); 137 fpDetectorConstruction->DrawAtoms_();
125 } 138 }
126 if (command == fpDrawNucleotides) { << 139 if( command == fpDrawNucleotides )
>> 140 {
127 fpDetectorConstruction->DrawNucleotides_() 141 fpDetectorConstruction->DrawNucleotides_();
128 } 142 }
129 if (command == fpDrawResidues) { << 143 if( command == fpDrawResidues )
>> 144 {
130 fpDetectorConstruction->DrawResidues_(); 145 fpDetectorConstruction->DrawResidues_();
131 } 146 }
132 if (command == fpBuildBoundingV) { << 147 if( command == fpBuildBoundingV )
>> 148 {
133 fpDetectorConstruction->BuildBoundingVolum 149 fpDetectorConstruction->BuildBoundingVolume();
134 } 150 }
135 if (command == fpDrawAtomsWithBounding) { << 151 if( command == fpDrawAtomsWithBounding )
>> 152 {
136 fpDetectorConstruction->DrawAtomsWithBound 153 fpDetectorConstruction->DrawAtomsWithBounding_();
137 } 154 }
138 if (command == fpDrawNucleotidesWithBounding << 155 if( command == fpDrawNucleotidesWithBounding )
>> 156 {
139 fpDetectorConstruction->DrawNucleotidesWit 157 fpDetectorConstruction->DrawNucleotidesWithBounding_();
140 } 158 }
141 if (command == fpDrawResiduesWithBounding) { << 159 if( command == fpDrawResiduesWithBounding )
>> 160 {
142 fpDetectorConstruction->DrawResiduesWithBo 161 fpDetectorConstruction->DrawResiduesWithBounding_();
143 } 162 }
144 } 163 }
145 164