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1 // 1 // 2 // ******************************************* 2 // ******************************************************************** 3 // * License and Disclaimer 3 // * License and Disclaimer * 4 // * 4 // * * 5 // * The Geant4 software is copyright of th 5 // * The Geant4 software is copyright of the Copyright Holders of * 6 // * the Geant4 Collaboration. It is provided 6 // * the Geant4 Collaboration. It is provided under the terms and * 7 // * conditions of the Geant4 Software License 7 // * conditions of the Geant4 Software License, included in the file * 8 // * LICENSE and available at http://cern.ch/ 8 // * LICENSE and available at http://cern.ch/geant4/license . These * 9 // * include a list of copyright holders. 9 // * include a list of copyright holders. * 10 // * 10 // * * 11 // * Neither the authors of this software syst 11 // * Neither the authors of this software system, nor their employing * 12 // * institutes,nor the agencies providing fin 12 // * institutes,nor the agencies providing financial support for this * 13 // * work make any representation or warran 13 // * work make any representation or warranty, express or implied, * 14 // * regarding this software system or assum 14 // * regarding this software system or assume any liability for its * 15 // * use. Please see the license in the file 15 // * use. Please see the license in the file LICENSE and URL above * 16 // * for the full disclaimer and the limitatio 16 // * for the full disclaimer and the limitation of liability. * 17 // * 17 // * * 18 // * This code implementation is the result 18 // * This code implementation is the result of the scientific and * 19 // * technical work of the GEANT4 collaboratio 19 // * technical work of the GEANT4 collaboration. * 20 // * By using, copying, modifying or distri 20 // * By using, copying, modifying or distributing the software (or * 21 // * any work based on the software) you ag 21 // * any work based on the software) you agree to acknowledge its * 22 // * use in resulting scientific publicati 22 // * use in resulting scientific publications, and indicate your * 23 // * acceptance of all terms of the Geant4 Sof 23 // * acceptance of all terms of the Geant4 Software license. * 24 // ******************************************* 24 // ******************************************************************** 25 // 25 // 26 // This example is provided by the Geant4-DNA 26 // This example is provided by the Geant4-DNA collaboration 27 // Any report or published results obtained us 27 // Any report or published results obtained using the Geant4-DNA software 28 // shall cite the following Geant4-DNA collabo 28 // shall cite the following Geant4-DNA collaboration publication: 29 // Med. Phys. 37 (2010) 4692-4708 29 // Med. Phys. 37 (2010) 4692-4708 30 // Delage et al. PDB4DNA: implementation of DN 30 // Delage et al. PDB4DNA: implementation of DNA geometry from the Protein Data 31 // Bank (PDB) description for 31 // Bank (PDB) description for Geant4-DNA Monte-Carlo 32 // simulations (submitted to 32 // simulations (submitted to Comput. Phys. Commun.) 33 // The Geant4-DNA web site is available at htt 33 // The Geant4-DNA web site is available at http://geant4-dna.org 34 // 34 // 35 // << 35 // $Id$ >> 36 // 36 /// \file DetectorMessenger.cc 37 /// \file DetectorMessenger.cc 37 /// \brief Implementation of the DetectorMesse 38 /// \brief Implementation of the DetectorMessenger class 38 39 39 #include "DetectorMessenger.hh" 40 #include "DetectorMessenger.hh" 40 << 41 #include "DetectorConstruction.hh" 41 #include "DetectorConstruction.hh" 42 42 >> 43 #include "G4UIdirectory.hh" 43 #include "G4UIcmdWithAString.hh" 44 #include "G4UIcmdWithAString.hh" 44 #include "G4UIcmdWithoutParameter.hh" 45 #include "G4UIcmdWithoutParameter.hh" 45 #include "G4UIdirectory.hh" << 46 46 47 //....oooOO0OOooo........oooOO0OOooo........oo 47 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo...... 48 48 49 DetectorMessenger::DetectorMessenger(DetectorC 49 DetectorMessenger::DetectorMessenger(DetectorConstruction* Det) 50 : G4UImessenger(), fpDetectorConstruction(De << 50 : G4UImessenger(), 51 { << 51 fpDetectorConstruction(Det) >> 52 { 52 fpDirectory = new G4UIdirectory("/PDB4DNA/") 53 fpDirectory = new G4UIdirectory("/PDB4DNA/"); 53 fpDirectory->SetGuidance("UI commands of thi 54 fpDirectory->SetGuidance("UI commands of this example"); 54 55 55 fpDetDirectory = new G4UIdirectory("/PDB4DNA 56 fpDetDirectory = new G4UIdirectory("/PDB4DNA/det/"); 56 fpDetDirectory->SetGuidance("Detector constr 57 fpDetDirectory->SetGuidance("Detector construction control"); 57 58 58 fpLoadPdbCmd = new G4UIcmdWithAString("/PDB4 << 59 fpLoadPdbCmd = new G4UIcmdWithAString("/PDB4DNA/det/loadPDB",this); 59 fpLoadPdbCmd->SetGuidance("Load PDB file"); 60 fpLoadPdbCmd->SetGuidance("Load PDB file"); 60 fpLoadPdbCmd->SetParameterName("filename", f << 61 fpLoadPdbCmd->SetParameterName("filename",false); 61 fpLoadPdbCmd->AvailableForStates(G4State_Pre 62 fpLoadPdbCmd->AvailableForStates(G4State_PreInit, G4State_Idle); 62 63 63 fpDrawAtoms = new G4UIcmdWithoutParameter("/ << 64 fpDrawAtoms = new G4UIcmdWithoutParameter("/PDB4DNA/det/drawAtoms",this); 64 fpDrawAtoms->SetGuidance("Draw atoms"); 65 fpDrawAtoms->SetGuidance("Draw atoms"); 65 fpDrawAtoms->AvailableForStates(G4State_PreI 66 fpDrawAtoms->AvailableForStates(G4State_PreInit, G4State_Idle); 66 67 67 fpDrawNucleotides = new G4UIcmdWithoutParame << 68 fpDrawNucleotides = new G4UIcmdWithoutParameter( >> 69 "/PDB4DNA/det/drawNucleotides", >> 70 this); 68 fpDrawNucleotides->SetGuidance("Draw nucleot 71 fpDrawNucleotides->SetGuidance("Draw nucleotides with bounding sphere"); 69 fpDrawNucleotides->AvailableForStates(G4Stat 72 fpDrawNucleotides->AvailableForStates(G4State_PreInit, G4State_Idle); 70 73 71 fpDrawResidues = new G4UIcmdWithoutParameter << 74 fpDrawResidues = new G4UIcmdWithoutParameter( 72 fpDrawResidues->SetGuidance( << 75 "/PDB4DNA/det/drawResidues", 73 "Draw residues inside nucleotides with sph << 76 this); 74 "linked by cylinders"); << 77 fpDrawResidues->SetGuidance("Draw residues inside nucleotides with sphere " >> 78 "linked by cylinders"); 75 fpDrawResidues->AvailableForStates(G4State_P 79 fpDrawResidues->AvailableForStates(G4State_PreInit, G4State_Idle); 76 80 77 fpBuildBoundingV = new G4UIcmdWithoutParamet << 81 fpBuildBoundingV = new G4UIcmdWithoutParameter( >> 82 "/PDB4DNA/det/buildBoundingV", >> 83 this); 78 fpBuildBoundingV->SetGuidance("Build molecul 84 fpBuildBoundingV->SetGuidance("Build molecule bounding volume"); 79 fpBuildBoundingV->AvailableForStates(G4State 85 fpBuildBoundingV->AvailableForStates(G4State_PreInit, G4State_Idle); 80 86 81 fpDrawAtomsWithBounding = new G4UIcmdWithout << 87 fpDrawAtomsWithBounding = new G4UIcmdWithoutParameter( >> 88 "/PDB4DNA/det/drawAtomsWithBounding", >> 89 this); 82 fpDrawAtomsWithBounding->SetGuidance("Draw a 90 fpDrawAtomsWithBounding->SetGuidance("Draw atoms with bounding volume"); 83 fpDrawAtomsWithBounding->AvailableForStates( 91 fpDrawAtomsWithBounding->AvailableForStates(G4State_PreInit, G4State_Idle); 84 92 85 fpDrawNucleotidesWithBounding = << 93 fpDrawNucleotidesWithBounding = new G4UIcmdWithoutParameter( 86 new G4UIcmdWithoutParameter("/PDB4DNA/det/ << 94 "/PDB4DNA/det/drawNucleotidesWithBounding", >> 95 this); 87 fpDrawNucleotidesWithBounding->SetGuidance( 96 fpDrawNucleotidesWithBounding->SetGuidance( 88 "Draw nucleotides with bounding sphere and << 97 "Draw nucleotides with bounding sphere and bounding volume"); 89 fpDrawNucleotidesWithBounding->AvailableForS << 98 fpDrawNucleotidesWithBounding->AvailableForStates(G4State_PreInit, 90 << 99 G4State_Idle); 91 fpDrawResiduesWithBounding = << 100 92 new G4UIcmdWithoutParameter("/PDB4DNA/det/ << 101 fpDrawResiduesWithBounding = new G4UIcmdWithoutParameter( 93 fpDrawResiduesWithBounding->SetGuidance( << 102 "/PDB4DNA/det/drawResiduesWithBounding", 94 "Draw residues inside nucleotides" << 103 this); 95 " with sphere linked by cylinders and with << 104 fpDrawResiduesWithBounding->SetGuidance("Draw residues inside nucleotides" 96 fpDrawResiduesWithBounding->AvailableForStat << 105 " with sphere linked by cylinders and with bounding volume"); >> 106 fpDrawResiduesWithBounding->AvailableForStates( >> 107 G4State_PreInit, G4State_Idle); 97 } 108 } 98 109 99 //....oooOO0OOooo........oooOO0OOooo........oo 110 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo...... 100 111 101 DetectorMessenger::~DetectorMessenger() 112 DetectorMessenger::~DetectorMessenger() 102 { 113 { 103 delete fpLoadPdbCmd; 114 delete fpLoadPdbCmd; 104 delete fpDrawAtoms; 115 delete fpDrawAtoms; 105 delete fpDrawNucleotides; 116 delete fpDrawNucleotides; 106 delete fpDrawResidues; 117 delete fpDrawResidues; 107 delete fpBuildBoundingV; 118 delete fpBuildBoundingV; 108 delete fpDrawAtomsWithBounding; 119 delete fpDrawAtomsWithBounding; 109 delete fpDrawNucleotidesWithBounding; 120 delete fpDrawNucleotidesWithBounding; 110 delete fpDrawResiduesWithBounding; 121 delete fpDrawResiduesWithBounding; 111 122 112 delete fpDetDirectory; 123 delete fpDetDirectory; 113 delete fpDirectory; 124 delete fpDirectory; 114 } 125 } 115 126 116 //....oooOO0OOooo........oooOO0OOooo........oo 127 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo...... 117 128 118 void DetectorMessenger::SetNewValue(G4UIcomman << 129 void DetectorMessenger::SetNewValue(G4UIcommand* command,G4String newValue) 119 { << 130 { 120 if (command == fpLoadPdbCmd) { << 131 if( command == fpLoadPdbCmd ) >> 132 { 121 fpDetectorConstruction->LoadPDBfile(newVal 133 fpDetectorConstruction->LoadPDBfile(newValue); 122 } 134 } 123 if (command == fpDrawAtoms) { << 135 if( command == fpDrawAtoms ) >> 136 { 124 fpDetectorConstruction->DrawAtoms_(); 137 fpDetectorConstruction->DrawAtoms_(); 125 } 138 } 126 if (command == fpDrawNucleotides) { << 139 if( command == fpDrawNucleotides ) >> 140 { 127 fpDetectorConstruction->DrawNucleotides_() 141 fpDetectorConstruction->DrawNucleotides_(); 128 } 142 } 129 if (command == fpDrawResidues) { << 143 if( command == fpDrawResidues ) >> 144 { 130 fpDetectorConstruction->DrawResidues_(); 145 fpDetectorConstruction->DrawResidues_(); 131 } 146 } 132 if (command == fpBuildBoundingV) { << 147 if( command == fpBuildBoundingV ) >> 148 { 133 fpDetectorConstruction->BuildBoundingVolum 149 fpDetectorConstruction->BuildBoundingVolume(); 134 } 150 } 135 if (command == fpDrawAtomsWithBounding) { << 151 if( command == fpDrawAtomsWithBounding ) >> 152 { 136 fpDetectorConstruction->DrawAtomsWithBound 153 fpDetectorConstruction->DrawAtomsWithBounding_(); 137 } 154 } 138 if (command == fpDrawNucleotidesWithBounding << 155 if( command == fpDrawNucleotidesWithBounding ) >> 156 { 139 fpDetectorConstruction->DrawNucleotidesWit 157 fpDetectorConstruction->DrawNucleotidesWithBounding_(); 140 } 158 } 141 if (command == fpDrawResiduesWithBounding) { << 159 if( command == fpDrawResiduesWithBounding ) >> 160 { 142 fpDetectorConstruction->DrawResiduesWithBo 161 fpDetectorConstruction->DrawResiduesWithBounding_(); 143 } 162 } 144 } 163 } 145 164