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1 // 1 //
2 // ******************************************* 2 // ********************************************************************
3 // * License and Disclaimer 3 // * License and Disclaimer *
4 // * 4 // * *
5 // * The Geant4 software is copyright of th 5 // * The Geant4 software is copyright of the Copyright Holders of *
6 // * the Geant4 Collaboration. It is provided 6 // * the Geant4 Collaboration. It is provided under the terms and *
7 // * conditions of the Geant4 Software License 7 // * conditions of the Geant4 Software License, included in the file *
8 // * LICENSE and available at http://cern.ch/ 8 // * LICENSE and available at http://cern.ch/geant4/license . These *
9 // * include a list of copyright holders. 9 // * include a list of copyright holders. *
10 // * 10 // * *
11 // * Neither the authors of this software syst 11 // * Neither the authors of this software system, nor their employing *
12 // * institutes,nor the agencies providing fin 12 // * institutes,nor the agencies providing financial support for this *
13 // * work make any representation or warran 13 // * work make any representation or warranty, express or implied, *
14 // * regarding this software system or assum 14 // * regarding this software system or assume any liability for its *
15 // * use. Please see the license in the file 15 // * use. Please see the license in the file LICENSE and URL above *
16 // * for the full disclaimer and the limitatio 16 // * for the full disclaimer and the limitation of liability. *
17 // * 17 // * *
18 // * This code implementation is the result 18 // * This code implementation is the result of the scientific and *
19 // * technical work of the GEANT4 collaboratio 19 // * technical work of the GEANT4 collaboration. *
20 // * By using, copying, modifying or distri 20 // * By using, copying, modifying or distributing the software (or *
21 // * any work based on the software) you ag 21 // * any work based on the software) you agree to acknowledge its *
22 // * use in resulting scientific publicati 22 // * use in resulting scientific publications, and indicate your *
23 // * acceptance of all terms of the Geant4 Sof 23 // * acceptance of all terms of the Geant4 Software license. *
24 // ******************************************* 24 // ********************************************************************
25 // 25 //
26 // This example is provided by the Geant4-DNA 26 // This example is provided by the Geant4-DNA collaboration
27 // Any report or published results obtained us 27 // Any report or published results obtained using the Geant4-DNA software
28 // shall cite the following Geant4-DNA collabo 28 // shall cite the following Geant4-DNA collaboration publication:
29 // Med. Phys. 37 (2010) 4692-4708 29 // Med. Phys. 37 (2010) 4692-4708
30 // Delage et al. PDB4DNA: implementation of DN 30 // Delage et al. PDB4DNA: implementation of DNA geometry from the Protein Data
31 // Bank (PDB) description for 31 // Bank (PDB) description for Geant4-DNA Monte-Carlo
32 // simulations (submitted to 32 // simulations (submitted to Comput. Phys. Commun.)
33 // The Geant4-DNA web site is available at htt 33 // The Geant4-DNA web site is available at http://geant4-dna.org
34 // 34 //
35 // 35 //
36 /// \file pdb4dna.cc 36 /// \file pdb4dna.cc
37 /// \brief Main program of the pdb4dna example 37 /// \brief Main program of the pdb4dna example
38 38
39 #include "ActionInitialization.hh" <<
40 #include "DetectorConstruction.hh" 39 #include "DetectorConstruction.hh"
41 #include "PhysicsList.hh" 40 #include "PhysicsList.hh"
>> 41 #include "ActionInitialization.hh"
42 42
43 #ifdef G4MULTITHREADED 43 #ifdef G4MULTITHREADED
44 # include "G4MTRunManager.hh" << 44 #include "G4MTRunManager.hh"
45 #else 45 #else
46 # include "G4RunManager.hh" << 46 #include "G4RunManager.hh"
47 #endif 47 #endif
48 48
49 #include "G4UIExecutive.hh" <<
50 #include "G4UImanager.hh" 49 #include "G4UImanager.hh"
51 #include "G4VisExecutive.hh" <<
52 #include "Randomize.hh" 50 #include "Randomize.hh"
>> 51 #include "G4VisExecutive.hh"
>> 52 #include "G4UIExecutive.hh"
53 #ifdef G4UI_USE_QT 53 #ifdef G4UI_USE_QT
54 # include "G4UIQt.hh" << 54 #include "G4UIQt.hh"
55 #endif 55 #endif
56 #include "CommandLineParser.hh" 56 #include "CommandLineParser.hh"
57 57
58 //....oooOO0OOooo........oooOO0OOooo........oo 58 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
59 59
60 using namespace G4DNAPARSER; 60 using namespace G4DNAPARSER;
61 CommandLineParser* parser(0); 61 CommandLineParser* parser(0);
62 62
63 void Parse(int& argc, char** argv); 63 void Parse(int& argc, char** argv);
64 64
65 //....oooOO0OOooo........oooOO0OOooo........oo 65 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
66 66
67 int main(int argc, char** argv) << 67 int main(int argc,char** argv)
68 { 68 {
69 ////////// 69 //////////
70 // Parse options given in commandLine 70 // Parse options given in commandLine
71 // 71 //
72 Parse(argc, argv); 72 Parse(argc, argv);
73 73
74 ////////// 74 //////////
75 // Construct the run manager according to wh 75 // Construct the run manager according to whether MT is activated or not
76 // 76 //
77 Command* commandLine(0); 77 Command* commandLine(0);
78 78
79 #ifdef G4MULTITHREADED 79 #ifdef G4MULTITHREADED
80 G4MTRunManager* runManager = new G4MTRunMana << 80 G4MTRunManager* runManager= new G4MTRunManager;
81 if ((commandLine = parser->GetCommandIfActiv << 81 if ((commandLine = parser->GetCommandIfActive("-mt")))
>> 82 {
82 int nThreads = 2; 83 int nThreads = 2;
83 if (commandLine->GetOption() == "NMAX") { << 84 if(commandLine->GetOption() == "NMAX")
84 nThreads = G4Threading::G4GetNumberOfCor << 85 {
>> 86 nThreads = G4Threading::G4GetNumberOfCores();
85 } 87 }
86 else { << 88 else
87 nThreads = G4UIcommand::ConvertToInt(com << 89 {
>> 90 nThreads = G4UIcommand::ConvertToInt(commandLine->GetOption());
88 } 91 }
89 G4cout << "===== PDB4DNA is started with " << 92 G4cout << "===== PDB4DNA is started with "
90 << " threads =====" << G4endl; << 93 << runManager->GetNumberOfThreads()
>> 94 << " threads =====" << G4endl;
91 95
92 runManager->SetNumberOfThreads(nThreads); 96 runManager->SetNumberOfThreads(nThreads);
93 } 97 }
94 #else 98 #else
95 G4RunManager* runManager = new G4RunManager( 99 G4RunManager* runManager = new G4RunManager();
96 #endif 100 #endif
97 << 101
98 // Set user classes 102 // Set user classes
99 // 103 //
100 runManager->SetUserInitialization(new Detect 104 runManager->SetUserInitialization(new DetectorConstruction());
101 runManager->SetUserInitialization(new Physic 105 runManager->SetUserInitialization(new PhysicsList);
102 runManager->SetUserInitialization(new Action 106 runManager->SetUserInitialization(new ActionInitialization());
103 107
104 // Initialize G4 keRnel 108 // Initialize G4 keRnel
105 // 109 //
106 // runManager->Initialize(); 110 // runManager->Initialize();
107 111
108 // Initialize visualization 112 // Initialize visualization
109 G4VisManager* visManager = new G4VisExecutiv 113 G4VisManager* visManager = new G4VisExecutive;
110 visManager->Initialize(); 114 visManager->Initialize();
111 115
112 // Get the pointer to the User Interface man 116 // Get the pointer to the User Interface manager
113 G4UImanager* UImanager = G4UImanager::GetUIp 117 G4UImanager* UImanager = G4UImanager::GetUIpointer();
114 G4UIExecutive* ui(0); 118 G4UIExecutive* ui(0);
115 << 119
116 // interactive mode : define UI session 120 // interactive mode : define UI session
117 if ((commandLine = parser->GetCommandIfActiv << 121 if ((commandLine = parser->GetCommandIfActive("-gui")))
118 ui = new G4UIExecutive(argc, argv, command << 122 {
>> 123 ui = new G4UIExecutive(argc, argv,
>> 124 commandLine->GetOption());
119 125
120 if (parser->GetCommandIfActive("-novis") = << 126 if(parser->GetCommandIfActive("-novis") == 0)
121 // visualization is used by default 127 // visualization is used by default
122 { 128 {
123 if ((commandLine = parser->GetCommandIfA 129 if ((commandLine = parser->GetCommandIfActive("-vis")))
124 // select a visualization driver if need 130 // select a visualization driver if needed (e.g. HepFile)
125 { 131 {
126 UImanager->ApplyCommand(G4String("/vis << 132 UImanager->ApplyCommand(G4String("/vis/open ")+
127 } << 133 commandLine->GetOption());
>> 134 }
128 else 135 else
129 // by default OGL is used 136 // by default OGL is used
130 { 137 {
131 UImanager->ApplyCommand("/vis/open OGL 138 UImanager->ApplyCommand("/vis/open OGL 600x600-0+0");
132 } 139 }
133 UImanager->ApplyCommand("/control/execut 140 UImanager->ApplyCommand("/control/execute vis.mac");
134 } 141 }
135 if (ui->IsGUI()) UImanager->ApplyCommand(" << 142 if (ui->IsGUI())
>> 143 UImanager->ApplyCommand("/control/execute gui.mac");
136 } 144 }
137 else << 145 else
138 // to be use visualization file (= store the 146 // to be use visualization file (= store the visualization into
139 // an external file: 147 // an external file:
140 // ASCIITree ; DAWNFILE ; HepRepFile ; VRML 148 // ASCIITree ; DAWNFILE ; HepRepFile ; VRML(1,2)FILE ; gMocrenFile ...
141 { 149 {
142 if ((commandLine = parser->GetCommandIfAct << 150 if ((commandLine = parser->GetCommandIfActive("-vis")))
143 UImanager->ApplyCommand(G4String("/vis/o << 151 {
144 UImanager->ApplyCommand("/control/execut << 152 UImanager->ApplyCommand(G4String("/vis/open ")+
>> 153 commandLine->GetOption());
>> 154 UImanager->ApplyCommand("/control/execute vis.mac");
145 } 155 }
146 } 156 }
147 157
148 if ((commandLine = parser->GetCommandIfActiv << 158 if ((commandLine = parser->GetCommandIfActive("-mac")))
>> 159 {
149 G4String command = "/control/execute "; 160 G4String command = "/control/execute ";
150 UImanager->ApplyCommand(command + commandL 161 UImanager->ApplyCommand(command + commandLine->GetOption());
151 } 162 }
152 else { << 163 else
>> 164 {
153 UImanager->ApplyCommand("/control/execute 165 UImanager->ApplyCommand("/control/execute init.mac");
154 } 166 }
155 167
156 if ((commandLine = parser->GetCommandIfActiv << 168 if ((commandLine = parser->GetCommandIfActive("-gui")))
>> 169 {
157 #ifdef G4UI_USE_QT 170 #ifdef G4UI_USE_QT
158 G4UIQt* UIQt = static_cast<G4UIQt*>(UImana << 171 G4UIQt* UIQt = static_cast<G4UIQt*> (UImanager->GetG4UIWindow());
159 if (UIQt) { << 172 if ( UIQt) {
160 UIQt->AddViewerTabFromFile("README", "RE << 173 UIQt->AddViewerTabFromFile("README", "README from "+ G4String(argv[0]));
161 } 174 }
162 #endif 175 #endif
163 ui->SessionStart(); 176 ui->SessionStart();
164 delete ui; 177 delete ui;
165 } 178 }
166 179
167 // Job termination 180 // Job termination
168 delete visManager; 181 delete visManager;
169 delete runManager; 182 delete runManager;
170 183
171 return 0; 184 return 0;
172 } 185 }
173 186
174 //....oooOO0OOooo........oooOO0OOooo........oo 187 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo.....
175 188
176 void Parse(int& argc, char** argv) 189 void Parse(int& argc, char** argv)
177 { 190 {
178 ////////// 191 //////////
179 // Parse options given in commandLine 192 // Parse options given in commandLine
180 // 193 //
181 parser = CommandLineParser::GetParser(); 194 parser = CommandLineParser::GetParser();
182 195
183 parser->AddCommand("-gui", Command::OptionNo << 196 parser->AddCommand("-gui",
184 "Select geant4 UI or just << 197 Command::OptionNotCompulsory,
185 << 198 "Select geant4 UI or just launch a geant4 terminal session",
186 parser->AddCommand("-mac", Command::WithOpti << 199 "qt");
187 << 200
188 // You cann your own command, as for instanc << 201 parser->AddCommand("-mac",
189 // parser->AddCommand("-seed", << 202 Command::WithOption,
190 // Command::WithOption, << 203 "Give a mac file to execute",
191 // "Give a seed value in << 204 "pdb4dna.in");
192 // it is then up to you to manage this optio << 205
>> 206 // You cann your own command, as for instance:
>> 207 // parser->AddCommand("-seed",
>> 208 // Command::WithOption,
>> 209 // "Give a seed value in argument to be tested", "seed");
>> 210 // it is then up to you to manage this option
193 211
194 #ifdef G4MULTITHREADED 212 #ifdef G4MULTITHREADED
195 parser->AddCommand("-mt", Command::WithOptio << 213 parser->AddCommand("-mt", Command::WithOption,
>> 214 "Launch in MT mode (events computed in parallel)",
196 "2"); 215 "2");
197 #endif 216 #endif
198 217
199 parser->AddCommand("-vis", Command::WithOpti << 218 parser->AddCommand("-vis",
>> 219 Command::WithOption,
>> 220 "Select a visualization driver",
200 "OGL 600x600-0+0"); 221 "OGL 600x600-0+0");
201 222
202 parser->AddCommand("-novis", Command::Withou << 223 parser->AddCommand("-novis",
>> 224 Command::WithoutOption,
>> 225 "Deactivate visualization when using GUI");
203 226
204 ////////// 227 //////////
205 // If -h or --help is given in option : prin 228 // If -h or --help is given in option : print help and exit
206 // 229 //
207 if (parser->Parse(argc, argv) != 0) // help << 230 if (parser->Parse(argc, argv) != 0) // help is being printed
208 { 231 {
209 // if you are using ROOT, create a TApplic 232 // if you are using ROOT, create a TApplication in this condition in order
210 // to print the help from ROOT as well 233 // to print the help from ROOT as well
211 CommandLineParser::DeleteInstance(); 234 CommandLineParser::DeleteInstance();
212 std::exit(0); 235 std::exit(0);
213 } 236 }
214 237
215 /////////// 238 ///////////
216 // Kill application if wrong argument in com 239 // Kill application if wrong argument in command line
217 // 240 //
218 if (parser->CheckIfNotHandledOptionsExists(a << 241 if (parser->CheckIfNotHandledOptionsExists(argc, argv))
>> 242 {
219 // if you are using ROOT, you should initi 243 // if you are using ROOT, you should initialise your TApplication
220 // before this condition 244 // before this condition
221 abort(); 245 abort();
222 } 246 }
223 } 247 }
224 248