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1 // 1 //
2 // ******************************************* 2 // ********************************************************************
3 // * License and Disclaimer 3 // * License and Disclaimer *
4 // * 4 // * *
5 // * The Geant4 software is copyright of th 5 // * The Geant4 software is copyright of the Copyright Holders of *
6 // * the Geant4 Collaboration. It is provided 6 // * the Geant4 Collaboration. It is provided under the terms and *
7 // * conditions of the Geant4 Software License 7 // * conditions of the Geant4 Software License, included in the file *
8 // * LICENSE and available at http://cern.ch/ 8 // * LICENSE and available at http://cern.ch/geant4/license . These *
9 // * include a list of copyright holders. 9 // * include a list of copyright holders. *
10 // * 10 // * *
11 // * Neither the authors of this software syst 11 // * Neither the authors of this software system, nor their employing *
12 // * institutes,nor the agencies providing fin 12 // * institutes,nor the agencies providing financial support for this *
13 // * work make any representation or warran 13 // * work make any representation or warranty, express or implied, *
14 // * regarding this software system or assum 14 // * regarding this software system or assume any liability for its *
15 // * use. Please see the license in the file 15 // * use. Please see the license in the file LICENSE and URL above *
16 // * for the full disclaimer and the limitatio 16 // * for the full disclaimer and the limitation of liability. *
17 // * 17 // * *
18 // * This code implementation is the result 18 // * This code implementation is the result of the scientific and *
19 // * technical work of the GEANT4 collaboratio 19 // * technical work of the GEANT4 collaboration. *
20 // * By using, copying, modifying or distri 20 // * By using, copying, modifying or distributing the software (or *
21 // * any work based on the software) you ag 21 // * any work based on the software) you agree to acknowledge its *
22 // * use in resulting scientific publicati 22 // * use in resulting scientific publications, and indicate your *
23 // * acceptance of all terms of the Geant4 Sof 23 // * acceptance of all terms of the Geant4 Software license. *
24 // ******************************************* 24 // ********************************************************************
25 // 25 //
26 // This example is provided by the Geant4-DNA 26 // This example is provided by the Geant4-DNA collaboration
27 // Any report or published results obtained us 27 // Any report or published results obtained using the Geant4-DNA software
28 // shall cite the following Geant4-DNA collabo 28 // shall cite the following Geant4-DNA collaboration publication:
29 // Med. Phys. 37 (2010) 4692-4708 29 // Med. Phys. 37 (2010) 4692-4708
30 // Delage et al. PDB4DNA: implementation of DN 30 // Delage et al. PDB4DNA: implementation of DNA geometry from the Protein Data
31 // Bank (PDB) description for 31 // Bank (PDB) description for Geant4-DNA Monte-Carlo
32 // simulations (submitted to 32 // simulations (submitted to Comput. Phys. Commun.)
33 // The Geant4-DNA web site is available at htt 33 // The Geant4-DNA web site is available at http://geant4-dna.org
34 // 34 //
>> 35 // $Id$
35 // 36 //
36 /// \file pdb4dna.cc 37 /// \file pdb4dna.cc
37 /// \brief Main program of the pdb4dna example 38 /// \brief Main program of the pdb4dna example
38 39
39 #include "ActionInitialization.hh" <<
40 #include "DetectorConstruction.hh" 40 #include "DetectorConstruction.hh"
41 #include "PhysicsList.hh" 41 #include "PhysicsList.hh"
>> 42 #include "ActionInitialization.hh"
42 43
43 #ifdef G4MULTITHREADED 44 #ifdef G4MULTITHREADED
44 # include "G4MTRunManager.hh" << 45 #include "G4MTRunManager.hh"
45 #else 46 #else
46 # include "G4RunManager.hh" << 47 #include "G4RunManager.hh"
47 #endif 48 #endif
48 49
49 #include "G4UIExecutive.hh" <<
50 #include "G4UImanager.hh" 50 #include "G4UImanager.hh"
51 #include "G4VisExecutive.hh" <<
52 #include "Randomize.hh" 51 #include "Randomize.hh"
53 #ifdef G4UI_USE_QT << 52 #include "G4VisExecutive.hh"
54 # include "G4UIQt.hh" << 53 #include "G4UIExecutive.hh"
55 #endif << 54 #include "G4UIQt.hh"
56 #include "CommandLineParser.hh" 55 #include "CommandLineParser.hh"
57 56
58 //....oooOO0OOooo........oooOO0OOooo........oo 57 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
59 58
60 using namespace G4DNAPARSER; 59 using namespace G4DNAPARSER;
61 CommandLineParser* parser(0); 60 CommandLineParser* parser(0);
62 61
63 void Parse(int& argc, char** argv); 62 void Parse(int& argc, char** argv);
64 63
>> 64
65 //....oooOO0OOooo........oooOO0OOooo........oo 65 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
66 66
67 int main(int argc, char** argv) << 67 int main(int argc,char** argv)
68 { 68 {
69 ////////// 69 //////////
70 // Parse options given in commandLine 70 // Parse options given in commandLine
71 // 71 //
72 Parse(argc, argv); 72 Parse(argc, argv);
73 73
>> 74 // Set the Seed
>> 75 CLHEP::RanecuEngine defaultEngine(1234567);
>> 76 G4Random::setTheEngine(&defaultEngine);
>> 77
>> 78 // Choose the Random engine
>> 79 //
>> 80 CLHEP::HepRandom::setTheEngine(new CLHEP::RanecuEngine);
>> 81
74 ////////// 82 //////////
75 // Construct the run manager according to wh 83 // Construct the run manager according to whether MT is activated or not
76 // 84 //
77 Command* commandLine(0); 85 Command* commandLine(0);
78 86
79 #ifdef G4MULTITHREADED 87 #ifdef G4MULTITHREADED
80 G4MTRunManager* runManager = new G4MTRunMana << 88 G4MTRunManager* runManager= new G4MTRunManager;
81 if ((commandLine = parser->GetCommandIfActiv << 89 if ((commandLine = parser->GetCommandIfActive("-mt")))
>> 90 {
82 int nThreads = 2; 91 int nThreads = 2;
83 if (commandLine->GetOption() == "NMAX") { << 92 if(commandLine->GetOption() == "NMAX")
84 nThreads = G4Threading::G4GetNumberOfCor << 93 {
>> 94 nThreads = G4Threading::G4GetNumberOfCores();
85 } 95 }
86 else { << 96 else
87 nThreads = G4UIcommand::ConvertToInt(com << 97 {
>> 98 nThreads = G4UIcommand::ConvertToInt(commandLine->GetOption());
88 } 99 }
89 G4cout << "===== PDB4DNA is started with " << 100 G4cout << "===== PDB4DNA is started with "
90 << " threads =====" << G4endl; << 101 << runManager->GetNumberOfThreads()
>> 102 << " threads =====" << G4endl;
91 103
92 runManager->SetNumberOfThreads(nThreads); 104 runManager->SetNumberOfThreads(nThreads);
93 } 105 }
94 #else 106 #else
95 G4RunManager* runManager = new G4RunManager( 107 G4RunManager* runManager = new G4RunManager();
96 #endif 108 #endif
97 << 109
98 // Set user classes 110 // Set user classes
99 // 111 //
100 runManager->SetUserInitialization(new Detect 112 runManager->SetUserInitialization(new DetectorConstruction());
101 runManager->SetUserInitialization(new Physic 113 runManager->SetUserInitialization(new PhysicsList);
102 runManager->SetUserInitialization(new Action 114 runManager->SetUserInitialization(new ActionInitialization());
103 115
104 // Initialize G4 keRnel 116 // Initialize G4 keRnel
105 // 117 //
106 // runManager->Initialize(); 118 // runManager->Initialize();
107 119
108 // Initialize visualization 120 // Initialize visualization
109 G4VisManager* visManager = new G4VisExecutiv 121 G4VisManager* visManager = new G4VisExecutive;
110 visManager->Initialize(); 122 visManager->Initialize();
111 123
112 // Get the pointer to the User Interface man 124 // Get the pointer to the User Interface manager
113 G4UImanager* UImanager = G4UImanager::GetUIp 125 G4UImanager* UImanager = G4UImanager::GetUIpointer();
114 G4UIExecutive* ui(0); 126 G4UIExecutive* ui(0);
115 << 127
116 // interactive mode : define UI session 128 // interactive mode : define UI session
117 if ((commandLine = parser->GetCommandIfActiv << 129 if ((commandLine = parser->GetCommandIfActive("-gui")))
118 ui = new G4UIExecutive(argc, argv, command << 130 {
>> 131 ui = new G4UIExecutive(argc, argv,
>> 132 commandLine->GetOption());
119 133
120 if (parser->GetCommandIfActive("-novis") = << 134 if(parser->GetCommandIfActive("-novis") == 0)
121 // visualization is used by default 135 // visualization is used by default
122 { 136 {
123 if ((commandLine = parser->GetCommandIfA 137 if ((commandLine = parser->GetCommandIfActive("-vis")))
124 // select a visualization driver if need 138 // select a visualization driver if needed (e.g. HepFile)
125 { 139 {
126 UImanager->ApplyCommand(G4String("/vis << 140 UImanager->ApplyCommand(G4String("/vis/open ")+
127 } << 141 commandLine->GetOption());
>> 142 }
128 else 143 else
129 // by default OGL is used 144 // by default OGL is used
130 { 145 {
131 UImanager->ApplyCommand("/vis/open OGL 146 UImanager->ApplyCommand("/vis/open OGL 600x600-0+0");
132 } 147 }
133 UImanager->ApplyCommand("/control/execut 148 UImanager->ApplyCommand("/control/execute vis.mac");
134 } 149 }
135 if (ui->IsGUI()) UImanager->ApplyCommand(" << 150 if (ui->IsGUI())
>> 151 UImanager->ApplyCommand("/control/execute gui.mac");
136 } 152 }
137 else << 153 else
138 // to be use visualization file (= store the 154 // to be use visualization file (= store the visualization into
139 // an external file: 155 // an external file:
140 // ASCIITree ; DAWNFILE ; HepRepFile ; VRML 156 // ASCIITree ; DAWNFILE ; HepRepFile ; VRML(1,2)FILE ; gMocrenFile ...
141 { 157 {
142 if ((commandLine = parser->GetCommandIfAct << 158 if ((commandLine = parser->GetCommandIfActive("-vis")))
143 UImanager->ApplyCommand(G4String("/vis/o << 159 {
144 UImanager->ApplyCommand("/control/execut << 160 UImanager->ApplyCommand(G4String("/vis/open ")+
>> 161 commandLine->GetOption());
>> 162 UImanager->ApplyCommand("/control/execute vis.mac");
145 } 163 }
146 } 164 }
147 165
148 if ((commandLine = parser->GetCommandIfActiv << 166 if ((commandLine = parser->GetCommandIfActive("-mac")))
>> 167 {
149 G4String command = "/control/execute "; 168 G4String command = "/control/execute ";
150 UImanager->ApplyCommand(command + commandL 169 UImanager->ApplyCommand(command + commandLine->GetOption());
151 } 170 }
152 else { << 171 else
>> 172 {
153 UImanager->ApplyCommand("/control/execute 173 UImanager->ApplyCommand("/control/execute init.mac");
154 } 174 }
155 175
156 if ((commandLine = parser->GetCommandIfActiv << 176 if ((commandLine = parser->GetCommandIfActive("-gui")))
>> 177 {
157 #ifdef G4UI_USE_QT 178 #ifdef G4UI_USE_QT
158 G4UIQt* UIQt = static_cast<G4UIQt*>(UImana << 179 G4UIQt* UIQt = static_cast<G4UIQt*> (UImanager->GetG4UIWindow());
159 if (UIQt) { << 180 if ( UIQt) {
160 UIQt->AddViewerTabFromFile("README", "RE << 181 UIQt->AddViewerTabFromFile("README", "README from "+ G4String(argv[0]));
161 } 182 }
162 #endif 183 #endif
163 ui->SessionStart(); 184 ui->SessionStart();
164 delete ui; 185 delete ui;
165 } 186 }
166 187
167 // Job termination 188 // Job termination
168 delete visManager; 189 delete visManager;
169 delete runManager; 190 delete runManager;
170 191
171 return 0; 192 return 0;
172 } 193 }
173 194
174 //....oooOO0OOooo........oooOO0OOooo........oo 195 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo.....
175 196
176 void Parse(int& argc, char** argv) 197 void Parse(int& argc, char** argv)
177 { 198 {
178 ////////// 199 //////////
179 // Parse options given in commandLine 200 // Parse options given in commandLine
180 // 201 //
181 parser = CommandLineParser::GetParser(); 202 parser = CommandLineParser::GetParser();
182 203
183 parser->AddCommand("-gui", Command::OptionNo << 204 parser->AddCommand("-gui",
184 "Select geant4 UI or just << 205 Command::OptionNotCompulsory,
185 << 206 "Select geant4 UI or just launch a geant4 terminal session",
186 parser->AddCommand("-mac", Command::WithOpti << 207 "qt");
187 << 208
188 // You cann your own command, as for instanc << 209 parser->AddCommand("-mac",
189 // parser->AddCommand("-seed", << 210 Command::WithOption,
190 // Command::WithOption, << 211 "Give a mac file to execute",
191 // "Give a seed value in << 212 "pdb4dna.in");
192 // it is then up to you to manage this optio << 213
>> 214 // You cann your own command, as for instance:
>> 215 // parser->AddCommand("-seed",
>> 216 // Command::WithOption,
>> 217 // "Give a seed value in argument to be tested", "seed");
>> 218 // it is then up to you to manage this option
193 219
194 #ifdef G4MULTITHREADED 220 #ifdef G4MULTITHREADED
195 parser->AddCommand("-mt", Command::WithOptio << 221 parser->AddCommand("-mt", Command::WithOption,
>> 222 "Launch in MT mode (events computed in parallel)",
196 "2"); 223 "2");
197 #endif 224 #endif
198 225
199 parser->AddCommand("-vis", Command::WithOpti << 226 parser->AddCommand("-vis",
>> 227 Command::WithOption,
>> 228 "Select a visualization driver",
200 "OGL 600x600-0+0"); 229 "OGL 600x600-0+0");
201 230
202 parser->AddCommand("-novis", Command::Withou << 231
>> 232 parser->AddCommand("-novis",
>> 233 Command::WithoutOption,
>> 234 "Deactivate visualization when using GUI");
203 235
204 ////////// 236 //////////
205 // If -h or --help is given in option : prin 237 // If -h or --help is given in option : print help and exit
206 // 238 //
207 if (parser->Parse(argc, argv) != 0) // help << 239 if (parser->Parse(argc, argv) != 0) // help is being printed
208 { 240 {
209 // if you are using ROOT, create a TApplic 241 // if you are using ROOT, create a TApplication in this condition in order
210 // to print the help from ROOT as well 242 // to print the help from ROOT as well
211 CommandLineParser::DeleteInstance(); 243 CommandLineParser::DeleteInstance();
212 std::exit(0); 244 std::exit(0);
213 } 245 }
214 246
215 /////////// 247 ///////////
216 // Kill application if wrong argument in com 248 // Kill application if wrong argument in command line
217 // 249 //
218 if (parser->CheckIfNotHandledOptionsExists(a << 250 if (parser->CheckIfNotHandledOptionsExists(argc, argv))
>> 251 {
219 // if you are using ROOT, you should initi 252 // if you are using ROOT, you should initialise your TApplication
220 // before this condition 253 // before this condition
221 abort(); 254 abort();
222 } 255 }
223 } 256 }
>> 257
224 258