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Geant4/examples/extended/medical/dna/neuron/src/TimeStepAction.cc

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Diff markup

Differences between /examples/extended/medical/dna/neuron/src/TimeStepAction.cc (Version 11.3.0) and /examples/extended/medical/dna/neuron/src/TimeStepAction.cc (Version 10.7.p4)


  1 //                                                  1 //
  2 // *******************************************      2 // ********************************************************************
  3 // * License and Disclaimer                         3 // * License and Disclaimer                                           *
  4 // *                                                4 // *                                                                  *
  5 // * The  Geant4 software  is  copyright of th      5 // * The  Geant4 software  is  copyright of the Copyright Holders  of *
  6 // * the Geant4 Collaboration.  It is provided      6 // * the Geant4 Collaboration.  It is provided  under  the terms  and *
  7 // * conditions of the Geant4 Software License      7 // * conditions of the Geant4 Software License,  included in the file *
  8 // * LICENSE and available at  http://cern.ch/      8 // * LICENSE and available at  http://cern.ch/geant4/license .  These *
  9 // * include a list of copyright holders.           9 // * include a list of copyright holders.                             *
 10 // *                                               10 // *                                                                  *
 11 // * Neither the authors of this software syst     11 // * Neither the authors of this software system, nor their employing *
 12 // * institutes,nor the agencies providing fin     12 // * institutes,nor the agencies providing financial support for this *
 13 // * work  make  any representation or  warran     13 // * work  make  any representation or  warranty, express or implied, *
 14 // * regarding  this  software system or assum     14 // * regarding  this  software system or assume any liability for its *
 15 // * use.  Please see the license in the file      15 // * use.  Please see the license in the file  LICENSE  and URL above *
 16 // * for the full disclaimer and the limitatio     16 // * for the full disclaimer and the limitation of liability.         *
 17 // *                                               17 // *                                                                  *
 18 // * This  code  implementation is the result      18 // * This  code  implementation is the result of  the  scientific and *
 19 // * technical work of the GEANT4 collaboratio     19 // * technical work of the GEANT4 collaboration.                      *
 20 // * By using,  copying,  modifying or  distri     20 // * By using,  copying,  modifying or  distributing the software (or *
 21 // * any work based  on the software)  you  ag     21 // * any work based  on the software)  you  agree  to acknowledge its *
 22 // * use  in  resulting  scientific  publicati     22 // * use  in  resulting  scientific  publications,  and indicate your *
 23 // * acceptance of all terms of the Geant4 Sof     23 // * acceptance of all terms of the Geant4 Software license.          *
 24 // *******************************************     24 // ********************************************************************
 25 //                                                 25 //
 26 // This example is provided by the Geant4-DNA      26 // This example is provided by the Geant4-DNA collaboration
 27 // Any report or published results obtained us     27 // Any report or published results obtained using the Geant4-DNA software
 28 // shall cite the following Geant4-DNA collabo     28 // shall cite the following Geant4-DNA collaboration publication:
 29 // Med. Phys. 37 (2010) 4692-4708                  29 // Med. Phys. 37 (2010) 4692-4708
 30 // and papers                                      30 // and papers
 31 // M. Batmunkh et al. J Radiat Res Appl Sci 8      31 // M. Batmunkh et al. J Radiat Res Appl Sci 8 (2015) 498-507
 32 // O. Belov et al. Physica Medica 32 (2016) 15     32 // O. Belov et al. Physica Medica 32 (2016) 1510-1520
 33 // The Geant4-DNA web site is available at htt     33 // The Geant4-DNA web site is available at http://geant4-dna.org
 34 //                                             <<  34 // 
 35 // -------------------------------------------     35 // -------------------------------------------------------------------
 36 // November 2016                                   36 // November 2016
 37 // -------------------------------------------     37 // -------------------------------------------------------------------
 38 //                                                 38 //
 39 /// \file TimeStepAction.hh                        39 /// \file TimeStepAction.hh
 40 /// \brief Implementation of the TimeStepActio     40 /// \brief Implementation of the TimeStepAction class
 41                                                    41 
 42 #include "TimeStepAction.hh"                       42 #include "TimeStepAction.hh"
 43                                                    43 
 44 #include "G4SystemOfUnits.hh"                  << 
 45 #include "G4UnitsTable.hh"                     << 
 46                                                << 
 47 #include <G4Scheduler.hh>                          44 #include <G4Scheduler.hh>
 48 // #include "G4Molecule.hh"                    <<  45 #include "G4UnitsTable.hh"
                                                   >>  46 #include "G4SystemOfUnits.hh"
                                                   >>  47 //#include "G4Molecule.hh"
 49                                                    48 
 50 TimeStepAction::TimeStepAction() : G4UserTimeS     49 TimeStepAction::TimeStepAction() : G4UserTimeStepAction()
 51 {                                                  50 {
 52   /**                                              51   /**
 53    * Give to G4ITTimeStepper the user defined      52    * Give to G4ITTimeStepper the user defined time steps
 54    * eg : from 1 picosecond to 10 picosecond,      53    * eg : from 1 picosecond to 10 picosecond, the minimum time
 55    * step that the TimeStepper can returned is     54    * step that the TimeStepper can returned is 0.1 picosecond.
 56    * Those time steps are used for the chemist     55    * Those time steps are used for the chemistry of G4DNA
 57    */                                              56    */
 58                                                    57 
 59   AddTimeStep(1 * picosecond, 0.1 * picosecond <<  58   AddTimeStep(1*picosecond, 0.1*picosecond);
 60   AddTimeStep(10 * picosecond, 1 * picosecond) <<  59   AddTimeStep(10*picosecond, 1*picosecond);
 61   AddTimeStep(100 * picosecond, 3 * picosecond <<  60   AddTimeStep(100*picosecond, 3*picosecond);
 62   AddTimeStep(1000 * picosecond, 10 * picoseco <<  61   AddTimeStep(1000*picosecond, 10*picosecond);
 63   AddTimeStep(10000 * picosecond, 100 * picose <<  62   AddTimeStep(10000*picosecond, 100*picosecond);
 64 }                                                  63 }
 65                                                    64 
 66 //....oooOO0OOooo........oooOO0OOooo........oo     65 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
 67                                                    66 
 68 TimeStepAction::~TimeStepAction()                  67 TimeStepAction::~TimeStepAction()
 69 {                                                  68 {
 70   // dtor                                      <<  69   //dtor
 71 }                                                  70 }
 72                                                    71 
 73 //....oooOO0OOooo........oooOO0OOooo........oo     72 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
 74                                                    73 
 75 TimeStepAction::TimeStepAction(const TimeStepA <<  74 TimeStepAction::TimeStepAction(const TimeStepAction& other) :
                                                   >>  75         G4UserTimeStepAction(other)
 76 {                                                  76 {
 77   // copy ctor                                 <<  77   //copy ctor
 78 }                                                  78 }
 79                                                    79 
 80 //....oooOO0OOooo........oooOO0OOooo........oo     80 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
 81                                                    81 
 82 TimeStepAction& TimeStepAction::operator=(cons <<  82 TimeStepAction&
                                                   >>  83 TimeStepAction::operator=(const TimeStepAction& rhs)
 83 {                                                  84 {
 84   if (this == &rhs) return *this;  // handle s <<  85   if (this == &rhs) return *this; // handle self assignment
 85   // assignment operator                       <<  86   //assignment operator
 86   return *this;                                    87   return *this;
 87 }                                                  88 }
 88                                                    89 
 89 //....oooOO0OOooo........oooOO0OOooo........oo     90 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
 90                                                    91 
 91 void TimeStepAction::UserPostTimeStepAction()      92 void TimeStepAction::UserPostTimeStepAction()
 92 {                                                  93 {
 93   //    G4cout << "_________________" << G4end     94   //    G4cout << "_________________" << G4endl;
 94   /*                                               95   /*
 95   G4cout << "Time Step : "                         96   G4cout << "Time Step : "
 96       << G4BestUnit(G4ITScheduler::Instance()-     97       << G4BestUnit(G4ITScheduler::Instance()->GetTimeStep(),
 97           "Time")                                  98           "Time")
 98           << G4endl;                               99           << G4endl;
 99                                                   100 
100   G4cout <<  "End of step: "                      101   G4cout <<  "End of step: "
101       << G4BestUnit(G4ITScheduler::Instance()-    102       << G4BestUnit(G4ITScheduler::Instance()->GetGlobalTime(),
102                             "Time")               103                             "Time")
103       << G4endl;                                  104       << G4endl;
104    */                                             105    */
105 }                                                 106 }
106                                                   107 
107 //....oooOO0OOooo........oooOO0OOooo........oo    108 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
108                                                   109 
109 void TimeStepAction::UserReactionAction(const  << 110 void TimeStepAction::UserReactionAction(const G4Track&,
110                                         const  << 111     const G4Track&,
                                                   >> 112     const std::vector<G4Track*>* /*products*/)
111 {                                                 113 {
112   /*                                              114   /*
113   for (int i = 0 ; i < nbProducts ; i ++)         115   for (int i = 0 ; i < nbProducts ; i ++)
114   {                                               116   {
115     G4cout << "Product[" << i << "] : "           117     G4cout << "Product[" << i << "] : "
116         << GetMolecule(products[i])->GetName()    118         << GetMolecule(products[i])->GetName()
117         << G4endl ;                               119         << G4endl ;
118   }                                               120   }
119    */                                             121    */
120 }                                                 122 }
121                                                   123