Geant4 Cross Reference

Cross-Referencing   Geant4
Geant4/examples/extended/medical/dna/neuron/src/TimeStepAction.cc

Version: [ ReleaseNotes ] [ 1.0 ] [ 1.1 ] [ 2.0 ] [ 3.0 ] [ 3.1 ] [ 3.2 ] [ 4.0 ] [ 4.0.p1 ] [ 4.0.p2 ] [ 4.1 ] [ 4.1.p1 ] [ 5.0 ] [ 5.0.p1 ] [ 5.1 ] [ 5.1.p1 ] [ 5.2 ] [ 5.2.p1 ] [ 5.2.p2 ] [ 6.0 ] [ 6.0.p1 ] [ 6.1 ] [ 6.2 ] [ 6.2.p1 ] [ 6.2.p2 ] [ 7.0 ] [ 7.0.p1 ] [ 7.1 ] [ 7.1.p1 ] [ 8.0 ] [ 8.0.p1 ] [ 8.1 ] [ 8.1.p1 ] [ 8.1.p2 ] [ 8.2 ] [ 8.2.p1 ] [ 8.3 ] [ 8.3.p1 ] [ 8.3.p2 ] [ 9.0 ] [ 9.0.p1 ] [ 9.0.p2 ] [ 9.1 ] [ 9.1.p1 ] [ 9.1.p2 ] [ 9.1.p3 ] [ 9.2 ] [ 9.2.p1 ] [ 9.2.p2 ] [ 9.2.p3 ] [ 9.2.p4 ] [ 9.3 ] [ 9.3.p1 ] [ 9.3.p2 ] [ 9.4 ] [ 9.4.p1 ] [ 9.4.p2 ] [ 9.4.p3 ] [ 9.4.p4 ] [ 9.5 ] [ 9.5.p1 ] [ 9.5.p2 ] [ 9.6 ] [ 9.6.p1 ] [ 9.6.p2 ] [ 9.6.p3 ] [ 9.6.p4 ] [ 10.0 ] [ 10.0.p1 ] [ 10.0.p2 ] [ 10.0.p3 ] [ 10.0.p4 ] [ 10.1 ] [ 10.1.p1 ] [ 10.1.p2 ] [ 10.1.p3 ] [ 10.2 ] [ 10.2.p1 ] [ 10.2.p2 ] [ 10.2.p3 ] [ 10.3 ] [ 10.3.p1 ] [ 10.3.p2 ] [ 10.3.p3 ] [ 10.4 ] [ 10.4.p1 ] [ 10.4.p2 ] [ 10.4.p3 ] [ 10.5 ] [ 10.5.p1 ] [ 10.6 ] [ 10.6.p1 ] [ 10.6.p2 ] [ 10.6.p3 ] [ 10.7 ] [ 10.7.p1 ] [ 10.7.p2 ] [ 10.7.p3 ] [ 10.7.p4 ] [ 11.0 ] [ 11.0.p1 ] [ 11.0.p2 ] [ 11.0.p3, ] [ 11.0.p4 ] [ 11.1 ] [ 11.1.1 ] [ 11.1.2 ] [ 11.1.3 ] [ 11.2 ] [ 11.2.1 ] [ 11.2.2 ] [ 11.3.0 ]

Diff markup

Differences between /examples/extended/medical/dna/neuron/src/TimeStepAction.cc (Version 11.3.0) and /examples/extended/medical/dna/neuron/src/TimeStepAction.cc (Version 10.4)


  1 //                                                  1 //
  2 // *******************************************      2 // ********************************************************************
  3 // * License and Disclaimer                         3 // * License and Disclaimer                                           *
  4 // *                                                4 // *                                                                  *
  5 // * The  Geant4 software  is  copyright of th      5 // * The  Geant4 software  is  copyright of the Copyright Holders  of *
  6 // * the Geant4 Collaboration.  It is provided      6 // * the Geant4 Collaboration.  It is provided  under  the terms  and *
  7 // * conditions of the Geant4 Software License      7 // * conditions of the Geant4 Software License,  included in the file *
  8 // * LICENSE and available at  http://cern.ch/      8 // * LICENSE and available at  http://cern.ch/geant4/license .  These *
  9 // * include a list of copyright holders.           9 // * include a list of copyright holders.                             *
 10 // *                                               10 // *                                                                  *
 11 // * Neither the authors of this software syst     11 // * Neither the authors of this software system, nor their employing *
 12 // * institutes,nor the agencies providing fin     12 // * institutes,nor the agencies providing financial support for this *
 13 // * work  make  any representation or  warran     13 // * work  make  any representation or  warranty, express or implied, *
 14 // * regarding  this  software system or assum     14 // * regarding  this  software system or assume any liability for its *
 15 // * use.  Please see the license in the file      15 // * use.  Please see the license in the file  LICENSE  and URL above *
 16 // * for the full disclaimer and the limitatio     16 // * for the full disclaimer and the limitation of liability.         *
 17 // *                                               17 // *                                                                  *
 18 // * This  code  implementation is the result      18 // * This  code  implementation is the result of  the  scientific and *
 19 // * technical work of the GEANT4 collaboratio     19 // * technical work of the GEANT4 collaboration.                      *
 20 // * By using,  copying,  modifying or  distri     20 // * By using,  copying,  modifying or  distributing the software (or *
 21 // * any work based  on the software)  you  ag     21 // * any work based  on the software)  you  agree  to acknowledge its *
 22 // * use  in  resulting  scientific  publicati     22 // * use  in  resulting  scientific  publications,  and indicate your *
 23 // * acceptance of all terms of the Geant4 Sof     23 // * acceptance of all terms of the Geant4 Software license.          *
 24 // *******************************************     24 // ********************************************************************
 25 //                                                 25 //
 26 // This example is provided by the Geant4-DNA      26 // This example is provided by the Geant4-DNA collaboration
 27 // Any report or published results obtained us     27 // Any report or published results obtained using the Geant4-DNA software
 28 // shall cite the following Geant4-DNA collabo     28 // shall cite the following Geant4-DNA collaboration publication:
 29 // Med. Phys. 37 (2010) 4692-4708                  29 // Med. Phys. 37 (2010) 4692-4708
 30 // and papers                                      30 // and papers
 31 // M. Batmunkh et al. J Radiat Res Appl Sci 8      31 // M. Batmunkh et al. J Radiat Res Appl Sci 8 (2015) 498-507
 32 // O. Belov et al. Physica Medica 32 (2016) 15     32 // O. Belov et al. Physica Medica 32 (2016) 1510-1520
 33 // The Geant4-DNA web site is available at htt     33 // The Geant4-DNA web site is available at http://geant4-dna.org
 34 //                                             <<  34 // 
 35 // -------------------------------------------     35 // -------------------------------------------------------------------
 36 // November 2016                                   36 // November 2016
 37 // -------------------------------------------     37 // -------------------------------------------------------------------
                                                   >>  38 // $Id$
 38 //                                                 39 //
 39 /// \file TimeStepAction.hh                        40 /// \file TimeStepAction.hh
 40 /// \brief Implementation of the TimeStepActio     41 /// \brief Implementation of the TimeStepAction class
 41                                                    42 
 42 #include "TimeStepAction.hh"                       43 #include "TimeStepAction.hh"
 43                                                    44 
 44 #include "G4SystemOfUnits.hh"                  << 
 45 #include "G4UnitsTable.hh"                     << 
 46                                                << 
 47 #include <G4Scheduler.hh>                          45 #include <G4Scheduler.hh>
 48 // #include "G4Molecule.hh"                    <<  46 #include "G4UnitsTable.hh"
                                                   >>  47 #include "G4SystemOfUnits.hh"
                                                   >>  48 //#include "G4Molecule.hh"
 49                                                    49 
 50 TimeStepAction::TimeStepAction() : G4UserTimeS     50 TimeStepAction::TimeStepAction() : G4UserTimeStepAction()
 51 {                                                  51 {
 52   /**                                              52   /**
 53    * Give to G4ITTimeStepper the user defined      53    * Give to G4ITTimeStepper the user defined time steps
 54    * eg : from 1 picosecond to 10 picosecond,      54    * eg : from 1 picosecond to 10 picosecond, the minimum time
 55    * step that the TimeStepper can returned is     55    * step that the TimeStepper can returned is 0.1 picosecond.
 56    * Those time steps are used for the chemist     56    * Those time steps are used for the chemistry of G4DNA
 57    */                                              57    */
 58                                                    58 
 59   AddTimeStep(1 * picosecond, 0.1 * picosecond <<  59   AddTimeStep(1*picosecond, 0.1*picosecond);
 60   AddTimeStep(10 * picosecond, 1 * picosecond) <<  60   AddTimeStep(10*picosecond, 1*picosecond);
 61   AddTimeStep(100 * picosecond, 3 * picosecond <<  61   AddTimeStep(100*picosecond, 3*picosecond);
 62   AddTimeStep(1000 * picosecond, 10 * picoseco <<  62   AddTimeStep(1000*picosecond, 10*picosecond);
 63   AddTimeStep(10000 * picosecond, 100 * picose <<  63   AddTimeStep(10000*picosecond, 100*picosecond);
 64 }                                                  64 }
 65                                                    65 
 66 //....oooOO0OOooo........oooOO0OOooo........oo     66 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
 67                                                    67 
 68 TimeStepAction::~TimeStepAction()                  68 TimeStepAction::~TimeStepAction()
 69 {                                                  69 {
 70   // dtor                                      <<  70   //dtor
 71 }                                                  71 }
 72                                                    72 
 73 //....oooOO0OOooo........oooOO0OOooo........oo     73 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
 74                                                    74 
 75 TimeStepAction::TimeStepAction(const TimeStepA <<  75 TimeStepAction::TimeStepAction(const TimeStepAction& other) :
                                                   >>  76         G4UserTimeStepAction(other)
 76 {                                                  77 {
 77   // copy ctor                                 <<  78   //copy ctor
 78 }                                                  79 }
 79                                                    80 
 80 //....oooOO0OOooo........oooOO0OOooo........oo     81 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
 81                                                    82 
 82 TimeStepAction& TimeStepAction::operator=(cons <<  83 TimeStepAction&
                                                   >>  84 TimeStepAction::operator=(const TimeStepAction& rhs)
 83 {                                                  85 {
 84   if (this == &rhs) return *this;  // handle s <<  86   if (this == &rhs) return *this; // handle self assignment
 85   // assignment operator                       <<  87   //assignment operator
 86   return *this;                                    88   return *this;
 87 }                                                  89 }
 88                                                    90 
 89 //....oooOO0OOooo........oooOO0OOooo........oo     91 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
 90                                                    92 
 91 void TimeStepAction::UserPostTimeStepAction()      93 void TimeStepAction::UserPostTimeStepAction()
 92 {                                                  94 {
 93   //    G4cout << "_________________" << G4end     95   //    G4cout << "_________________" << G4endl;
 94   /*                                               96   /*
 95   G4cout << "Time Step : "                         97   G4cout << "Time Step : "
 96       << G4BestUnit(G4ITScheduler::Instance()-     98       << G4BestUnit(G4ITScheduler::Instance()->GetTimeStep(),
 97           "Time")                                  99           "Time")
 98           << G4endl;                              100           << G4endl;
 99                                                   101 
100   G4cout <<  "End of step: "                      102   G4cout <<  "End of step: "
101       << G4BestUnit(G4ITScheduler::Instance()-    103       << G4BestUnit(G4ITScheduler::Instance()->GetGlobalTime(),
102                             "Time")               104                             "Time")
103       << G4endl;                                  105       << G4endl;
104    */                                             106    */
105 }                                                 107 }
106                                                   108 
107 //....oooOO0OOooo........oooOO0OOooo........oo    109 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
108                                                   110 
109 void TimeStepAction::UserReactionAction(const  << 111 void TimeStepAction::UserReactionAction(const G4Track&,
110                                         const  << 112     const G4Track&,
                                                   >> 113     const std::vector<G4Track*>* /*products*/)
111 {                                                 114 {
112   /*                                              115   /*
113   for (int i = 0 ; i < nbProducts ; i ++)         116   for (int i = 0 ; i < nbProducts ; i ++)
114   {                                               117   {
115     G4cout << "Product[" << i << "] : "           118     G4cout << "Product[" << i << "] : "
116         << GetMolecule(products[i])->GetName()    119         << GetMolecule(products[i])->GetName()
117         << G4endl ;                               120         << G4endl ;
118   }                                               121   }
119    */                                             122    */
120 }                                                 123 }
121                                                   124