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Geant4/examples/extended/medical/dna/neuron/src/PrimaryGeneratorAction.cc

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Diff markup

Differences between /examples/extended/medical/dna/neuron/src/PrimaryGeneratorAction.cc (Version 11.3.0) and /examples/extended/medical/dna/neuron/src/PrimaryGeneratorAction.cc (Version 6.1)


  1 //                                                  1 
  2 // *******************************************    
  3 // * License and Disclaimer                       
  4 // *                                              
  5 // * The  Geant4 software  is  copyright of th    
  6 // * the Geant4 Collaboration.  It is provided    
  7 // * conditions of the Geant4 Software License    
  8 // * LICENSE and available at  http://cern.ch/    
  9 // * include a list of copyright holders.         
 10 // *                                              
 11 // * Neither the authors of this software syst    
 12 // * institutes,nor the agencies providing fin    
 13 // * work  make  any representation or  warran    
 14 // * regarding  this  software system or assum    
 15 // * use.  Please see the license in the file     
 16 // * for the full disclaimer and the limitatio    
 17 // *                                              
 18 // * This  code  implementation is the result     
 19 // * technical work of the GEANT4 collaboratio    
 20 // * By using,  copying,  modifying or  distri    
 21 // * any work based  on the software)  you  ag    
 22 // * use  in  resulting  scientific  publicati    
 23 // * acceptance of all terms of the Geant4 Sof    
 24 // *******************************************    
 25 //                                                
 26 // This example is provided by the Geant4-DNA     
 27 // Any report or published results obtained us    
 28 // shall cite the following Geant4-DNA collabo    
 29 // Med. Phys. 37 (2010) 4692-4708                 
 30 // and papers                                     
 31 // M. Batmunkh et al. J Radiat Res Appl Sci 8     
 32 // O. Belov et al. Physica Medica 32 (2016) 15    
 33 // The Geant4-DNA web site is available at htt    
 34 //                                                
 35 // -------------------------------------------    
 36 // November 2016                                  
 37 // -------------------------------------------    
 38 //                                                
 39 /// \file PrimaryGeneratorAction.cc               
 40 /// \brief Implementation of the PrimaryGenera    
 41                                                   
 42 #include "PrimaryGeneratorAction.hh"              
 43                                                   
 44 #include "G4SystemOfUnits.hh"                     
 45 //                                                
 46 #include "CommandLineParser.hh"                   
 47                                                   
 48 #include "G4Box.hh"                               
 49 #include "G4Event.hh"                             
 50 #include "G4LogicalVolume.hh"                     
 51 #include "G4LogicalVolumeStore.hh"                
 52 #include "G4Orb.hh"                               
 53 #include "G4ParticleDefinition.hh"                
 54 #include "G4ParticleGun.hh"                       
 55 #include "G4PhysicalConstants.hh"                 
 56 #include "G4PhysicalVolumeStore.hh"               
 57 #include "G4Proton.hh"                            
 58 #include "G4VPhysicalVolume.hh"                   
 59 #include "Randomize.hh"                           
 60                                                   
 61 using namespace G4DNAPARSER;                      
 62                                                   
 63 //....oooOO0OOooo........oooOO0OOooo........oo    
 64                                                   
 65 PrimaryGeneratorAction::PrimaryGeneratorAction    
 66 {                                                 
 67   G4int n_particle = 1;                           
 68   fpParticleGun = new G4ParticleGun(n_particle    
 69   //                                              
 70   G4ParticleDefinition* particle = G4Proton::P    
 71   fpParticleGun->SetParticleDefinition(particl    
 72   // default gun parameters                       
 73   fpParticleGun->SetParticleEnergy(10. * MeV);    
 74   fpParticleGun->SetParticleMomentumDirection(    
 75   fpParticleGun->SetParticlePosition(G4ThreeVe    
 76 }                                                 
 77                                                   
 78 //....oooOO0OOooo........oooOO0OOooo........oo    
 79                                                   
 80 PrimaryGeneratorAction::~PrimaryGeneratorActio    
 81 {                                                 
 82   delete fpParticleGun;                           
 83 }                                                 
 84                                                   
 85 //....oooOO0OOooo........oooOO0OOooo........oo    
 86                                                   
 87 void PrimaryGeneratorAction::GeneratePrimaries    
 88 {                                                 
 89   // Initial kinetic energy of particles beam     
 90                                                   
 91   // G4double Ekin = 10.*MeV;                     
 92   // G4double deltaEkin = 9.0955e-5*MeV;          
 93   // fpParticleGun->SetParticleEnergy(G4RandGa    
 94                                                   
 95   // In order to avoid dependence of PrimaryGe    
 96   // on DetectorConstruction class we get worl    
 97   // from G4LogicalVolumeStore                    
 98                                                   
 99   // We included three options for particles d    
100                                                   
101   G4double mediumRadius = 0.;                     
102   G4double boundingXHalfLength = 0.;              
103   G4double boundingYHalfLength = 0.;              
104   G4double boundingZHalfLength = 0.;              
105   G4LogicalVolume* mediumLV = G4LogicalVolumeS    
106   G4LogicalVolume* boundingLV = G4LogicalVolum    
107   G4Orb* mediumSphere = 0;                        
108   G4Box* boundingSlice = 0;                       
109   if (mediumLV && boundingLV) {                   
110     mediumSphere = dynamic_cast<G4Orb*>(medium    
111     boundingSlice = dynamic_cast<G4Box*>(bound    
112   }                                               
113   if (mediumSphere && boundingSlice) {            
114     mediumRadius = mediumSphere->GetRadius();     
115     boundingXHalfLength = boundingSlice->GetXH    
116     boundingYHalfLength = boundingSlice->GetYH    
117     boundingZHalfLength = boundingSlice->GetZH    
118                                                   
119     /// a) Partilces directed to "square" on t    
120     ///   (or YZ, XZ)                             
121                                                   
122     if (CommandLineParser::GetParser()->GetCom    
123       // INITIAL BEAM DIVERGENCE                  
124       fpParticleGun->SetParticleMomentumDirect    
125       // // INITIAL BEAM POSITION                 
126       fpParticleGun->SetParticlePosition(G4Thr    
127         CLHEP::RandFlat::shoot(-boundingXHalfL    
128         CLHEP::RandFlat::shoot(-boundingYHalfL    
129     }                                             
130                                                   
131     /// b) Partilces directed to "disk" on the    
132     ///    bounding slice (or YZ, XZ)             
133                                                   
134     else if (CommandLineParser::GetParser()->G    
135       fpParticleGun->SetParticleMomentumDirect    
136       G4double x0, y0, z0;                        
137       x0 = 100. * mm;                             
138       y0 = 100. * mm;                             
139       z0 = -mediumRadius;  // mediumRadius;       
140       while (!(std::sqrt(x0 * x0 + y0 * y0) <=    
141         x0 = CLHEP::RandFlat::shoot(-mediumRad    
142         y0 = CLHEP::RandFlat::shoot(-mediumRad    
143       }                                           
144       fpParticleGun->SetParticlePosition(G4Thr    
145     }                                             
146                                                   
147     /// c) Partilces directed towards the boun    
148     // Select a starting position on a sphere     
149     // target volume and neuron morphology        
150     else {                                        
151       G4double cosTheta = 2. * G4UniformRand()    
152       G4double sinTheta = std::sqrt(1. - cosTh    
153       G4double phi = twopi * G4UniformRand();     
154       G4ThreeVector positionStart(mediumRadius    
155                                   mediumRadius    
156       fpParticleGun->SetParticlePosition(posit    
157       // To compute the direction, select a po    
158       G4ThreeVector positionDir(boundingXHalfL    
159                                 boundingYHalfL    
160                                 boundingZHalfL    
161       fpParticleGun->SetParticleMomentumDirect    
162       // Surface area of sphere                   
163       fGunArea = 4. * pi * mediumRadius * medi    
164     }                                             
165   }                                               
166   else {                                          
167     G4cerr << "Bounding slice volume not found    
168     G4cerr << "Default particle kinematic used    
169   }                                               
170                                                   
171   fpParticleGun->GeneratePrimaryVertex(anEvent    
172 }                                                 
173