| Geant4 Cross Reference |
1 // 1 //
2 // ******************************************* 2 // ********************************************************************
3 // * License and Disclaimer 3 // * License and Disclaimer *
4 // * 4 // * *
5 // * The Geant4 software is copyright of th 5 // * The Geant4 software is copyright of the Copyright Holders of *
6 // * the Geant4 Collaboration. It is provided 6 // * the Geant4 Collaboration. It is provided under the terms and *
7 // * conditions of the Geant4 Software License 7 // * conditions of the Geant4 Software License, included in the file *
8 // * LICENSE and available at http://cern.ch/ 8 // * LICENSE and available at http://cern.ch/geant4/license . These *
9 // * include a list of copyright holders. 9 // * include a list of copyright holders. *
10 // * 10 // * *
11 // * Neither the authors of this software syst 11 // * Neither the authors of this software system, nor their employing *
12 // * institutes,nor the agencies providing fin 12 // * institutes,nor the agencies providing financial support for this *
13 // * work make any representation or warran 13 // * work make any representation or warranty, express or implied, *
14 // * regarding this software system or assum 14 // * regarding this software system or assume any liability for its *
15 // * use. Please see the license in the file 15 // * use. Please see the license in the file LICENSE and URL above *
16 // * for the full disclaimer and the limitatio 16 // * for the full disclaimer and the limitation of liability. *
17 // * 17 // * *
18 // * This code implementation is the result 18 // * This code implementation is the result of the scientific and *
19 // * technical work of the GEANT4 collaboratio 19 // * technical work of the GEANT4 collaboration. *
20 // * By using, copying, modifying or distri 20 // * By using, copying, modifying or distributing the software (or *
21 // * any work based on the software) you ag 21 // * any work based on the software) you agree to acknowledge its *
22 // * use in resulting scientific publicati 22 // * use in resulting scientific publications, and indicate your *
23 // * acceptance of all terms of the Geant4 Sof 23 // * acceptance of all terms of the Geant4 Software license. *
24 // ******************************************* 24 // ********************************************************************
25 // 25 //
26 // This example is provided by the Geant4-DNA 26 // This example is provided by the Geant4-DNA collaboration
27 // Any report or published results obtained us 27 // Any report or published results obtained using the Geant4-DNA software
28 // shall cite the following Geant4-DNA collabo 28 // shall cite the following Geant4-DNA collaboration publication:
29 // Med. Phys. 37 (2010) 4692-4708 29 // Med. Phys. 37 (2010) 4692-4708
30 // and papers 30 // and papers
31 // M. Batmunkh et al. J Radiat Res Appl Sci 8 31 // M. Batmunkh et al. J Radiat Res Appl Sci 8 (2015) 498-507
32 // O. Belov et al. Physica Medica 32 (2016) 15 32 // O. Belov et al. Physica Medica 32 (2016) 1510-1520
33 // The Geant4-DNA web site is available at htt 33 // The Geant4-DNA web site is available at http://geant4-dna.org
34 // << 34 //
35 // ------------------------------------------- 35 // -------------------------------------------------------------------
36 // November 2016 36 // November 2016
37 // ------------------------------------------- 37 // -------------------------------------------------------------------
38 // 38 //
39 /// \file ActionInitialization.cc << 39 /// \file ActionInitialization.cc
40 /// \brief Implementation of the ActionInitial 40 /// \brief Implementation of the ActionInitialization class
41 41
42 #include "ActionInitialization.hh" 42 #include "ActionInitialization.hh"
43 <<
44 #include "DetectorConstruction.hh" <<
45 #include "EventAction.hh" <<
46 #include "PrimaryGeneratorAction.hh" 43 #include "PrimaryGeneratorAction.hh"
47 #include "RunAction.hh" 44 #include "RunAction.hh"
48 #include "SteppingAction.hh" 45 #include "SteppingAction.hh"
>> 46 #include "DetectorConstruction.hh"
49 #include "TrackingAction.hh" 47 #include "TrackingAction.hh"
50 <<
51 #include "G4RunManager.hh" 48 #include "G4RunManager.hh"
>> 49 #include "EventAction.hh"
52 // added for chemistry 50 // added for chemistry
53 #include "DetectorConstruction.hh" <<
54 #include "ITSteppingAction.hh" <<
55 #include "ITTrackingAction.hh" <<
56 #include "ITTrackingInteractivity.hh" <<
57 #include "StackingAction.hh" <<
58 #include "TimeStepAction.hh" <<
59 <<
60 #include "G4DNAChemistryManager.hh" 51 #include "G4DNAChemistryManager.hh"
61 #include "G4Scheduler.hh" <<
62 #include "G4SystemOfUnits.hh" 52 #include "G4SystemOfUnits.hh"
63 #include "G4Threading.hh" <<
64 #include "G4UnitsTable.hh" 53 #include "G4UnitsTable.hh"
>> 54 #include "G4Threading.hh"
>> 55 #include "G4Scheduler.hh"
>> 56 #include "StackingAction.hh"
>> 57 #include "TimeStepAction.hh"
>> 58 #include "ITTrackingInteractivity.hh"
>> 59 #include "ITSteppingAction.hh"
>> 60 #include "ITTrackingAction.hh"
>> 61 #include "DetectorConstruction.hh"
65 62
66 //....oooOO0OOooo........oooOO0OOooo........oo 63 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
67 64
68 ActionInitialization::ActionInitialization(Det 65 ActionInitialization::ActionInitialization(DetectorConstruction* detector)
69 : G4VUserActionInitialization(), fDetector(d << 66 : G4VUserActionInitialization(),
>> 67 fDetector(detector)
70 {} 68 {}
71 69
72 //....oooOO0OOooo........oooOO0OOooo........oo 70 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
73 71
74 ActionInitialization::~ActionInitialization() << 72 ActionInitialization::~ActionInitialization()
>> 73 {}
75 74
76 //....oooOO0OOooo........oooOO0OOooo........oo 75 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
77 76
78 void ActionInitialization::BuildForMaster() co 77 void ActionInitialization::BuildForMaster() const
79 { 78 {
80 // In MT mode, to be clearer, the RunAction << 79 // In MT mode, to be clearer, the RunAction class for the master thread might
81 // be different than the one used for the wo << 80 // be different than the one used for the workers.
82 // This RunAction will be called before and << 81 // This RunAction will be called before and after starting the
83 // workers. << 82 // workers.
84 // For more details, please refer to : << 83 // For more details, please refer to :
85 // https://twiki.cern.ch/twiki/bin/view/Gean << 84 //https://twiki.cern.ch/twiki/bin/view/Geant4/Geant4MTForApplicationDevelopers
86 // << 85 //
87 86
88 SetUserAction(new RunAction(fDetector, 0)); 87 SetUserAction(new RunAction(fDetector, 0));
89 } 88 }
90 89
91 //....oooOO0OOooo........oooOO0OOooo........oo 90 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
92 91
93 void ActionInitialization::Build() const 92 void ActionInitialization::Build() const
94 { 93 {
95 // G4cout << "Build for = " 94 // G4cout << "Build for = "
96 // << G4RunManager::GetRunManager()->GetRunM 95 // << G4RunManager::GetRunManager()->GetRunManagerType()
97 // << G4endl; 96 // << G4endl;
98 97
99 PrimaryGeneratorAction* kinematics = new Pri 98 PrimaryGeneratorAction* kinematics = new PrimaryGeneratorAction();
100 SetUserAction(kinematics); 99 SetUserAction(kinematics);
101 << 100
102 TrackingAction* trackingAction = new Trackin 101 TrackingAction* trackingAction = new TrackingAction();
103 SetUserAction(trackingAction); 102 SetUserAction(trackingAction);
104 103
105 RunAction* runAction = new RunAction(fDetect << 104 RunAction* runAction= new RunAction(fDetector, kinematics);
106 SetUserAction(runAction); 105 SetUserAction(runAction);
107 106
108 SetUserAction(new SteppingAction(runAction)) 107 SetUserAction(new SteppingAction(runAction));
109 SetUserAction(new EventAction(runAction)); 108 SetUserAction(new EventAction(runAction));
110 // added << 109 // added
111 SetUserAction(new StackingAction()); 110 SetUserAction(new StackingAction());
112 111
113 // chemistry part 112 // chemistry part
114 if (G4DNAChemistryManager::IsActivated()) { << 113 if(G4DNAChemistryManager::IsActivated()){
115 G4Scheduler::Instance()->SetUserAction(new 114 G4Scheduler::Instance()->SetUserAction(new TimeStepAction());
116 115
117 // Uncomment and set to stop chemistry sta 116 // Uncomment and set to stop chemistry stage after:
118 // ...given number of time steps 117 // ...given number of time steps
119 // G4Scheduler::Instance()->SetMaxNbSteps( << 118 //G4Scheduler::Instance()->SetMaxNbSteps(1000);
120 119
121 // ...OR reaching this time 120 // ...OR reaching this time
122 G4Scheduler::Instance()->SetEndTime(0.01 * << 121 G4Scheduler::Instance()->SetEndTime(0.01*nanosecond); // default: 10 ps
123 122
124 G4Scheduler::Instance()->SetVerbose(1); / << 123 G4Scheduler::Instance()->SetVerbose(1); // default: 1-print reactions;
125 124
126 ITTrackingInteractivity* itInteractivity = 125 ITTrackingInteractivity* itInteractivity = new ITTrackingInteractivity();
127 itInteractivity->SetUserAction(new ITStepp 126 itInteractivity->SetUserAction(new ITSteppingAction);
128 itInteractivity->SetUserAction(new ITTrack 127 itInteractivity->SetUserAction(new ITTrackingAction);
129 G4Scheduler::Instance()->SetInteractivity( 128 G4Scheduler::Instance()->SetInteractivity(itInteractivity);
130 } 129 }
131 /* << 130 /*
132 // To output the pre-chemical stage << 131 // To output the pre-chemical stage
133 // << 132 //
134 G4String fileName ("output"); << 133 G4String fileName ("output");
135 << 134
136 if(G4RunManager::GetRunManager()->GetRunMa << 135 if(G4RunManager::GetRunManager()->GetRunManagerType() ==
137 G4RunManager::sequentialRM) << 136 G4RunManager::sequentialRM)
138 { << 137 {
139 // write initial situation at 1 picoseco << 138 // write initial situation at 1 picosecond
140 G4DNAChemistryManager::Instance()->Write << 139 G4DNAChemistryManager::Instance()->WriteInto(fileName + ".txt");
141 } << 140 }
142 else << 141 else
143 { << 142 {
144 G4int id = G4Threading::G4GetThreadId(); << 143 G4int id = G4Threading::G4GetThreadId();
145 << 144
146 G4String fileName_mt = fileName; << 145 G4String fileName_mt = fileName;
147 fileName_mt += G4UIcommand::ConvertToStr << 146 fileName_mt += G4UIcommand::ConvertToString(id);
148 fileName_mt += ".txt"; << 147 fileName_mt += ".txt";
149 << 148
150 G4cout << "chosen file name : " << fileN << 149 G4cout << "chosen file name : " << fileName_mt << G4endl;
151 << 150
152 G4DNAChemistryManager::Instance()->Write << 151 G4DNAChemistryManager::Instance()->WriteInto(fileName_mt);
153 } << 152 }
154 */ << 153 */
155 } << 154
>> 155 }
156 156
157 //....oooOO0OOooo........oooOO0OOooo........oo 157 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
158 158