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Geant4/examples/extended/medical/dna/neuron/src/ActionInitialization.cc

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Diff markup

Differences between /examples/extended/medical/dna/neuron/src/ActionInitialization.cc (Version 11.3.0) and /examples/extended/medical/dna/neuron/src/ActionInitialization.cc (Version 10.0.p2)


  1 //                                                  1 
  2 // *******************************************    
  3 // * License and Disclaimer                       
  4 // *                                              
  5 // * The  Geant4 software  is  copyright of th    
  6 // * the Geant4 Collaboration.  It is provided    
  7 // * conditions of the Geant4 Software License    
  8 // * LICENSE and available at  http://cern.ch/    
  9 // * include a list of copyright holders.         
 10 // *                                              
 11 // * Neither the authors of this software syst    
 12 // * institutes,nor the agencies providing fin    
 13 // * work  make  any representation or  warran    
 14 // * regarding  this  software system or assum    
 15 // * use.  Please see the license in the file     
 16 // * for the full disclaimer and the limitatio    
 17 // *                                              
 18 // * This  code  implementation is the result     
 19 // * technical work of the GEANT4 collaboratio    
 20 // * By using,  copying,  modifying or  distri    
 21 // * any work based  on the software)  you  ag    
 22 // * use  in  resulting  scientific  publicati    
 23 // * acceptance of all terms of the Geant4 Sof    
 24 // *******************************************    
 25 //                                                
 26 // This example is provided by the Geant4-DNA     
 27 // Any report or published results obtained us    
 28 // shall cite the following Geant4-DNA collabo    
 29 // Med. Phys. 37 (2010) 4692-4708                 
 30 // and papers                                     
 31 // M. Batmunkh et al. J Radiat Res Appl Sci 8     
 32 // O. Belov et al. Physica Medica 32 (2016) 15    
 33 // The Geant4-DNA web site is available at htt    
 34 //                                                
 35 // -------------------------------------------    
 36 // November 2016                                  
 37 // -------------------------------------------    
 38 //                                                
 39 /// \file ActionInitialization.cc                 
 40 /// \brief Implementation of the ActionInitial    
 41                                                   
 42 #include "ActionInitialization.hh"                
 43                                                   
 44 #include "DetectorConstruction.hh"                
 45 #include "EventAction.hh"                         
 46 #include "PrimaryGeneratorAction.hh"              
 47 #include "RunAction.hh"                           
 48 #include "SteppingAction.hh"                      
 49 #include "TrackingAction.hh"                      
 50                                                   
 51 #include "G4RunManager.hh"                        
 52 // added for chemistry                            
 53 #include "DetectorConstruction.hh"                
 54 #include "ITSteppingAction.hh"                    
 55 #include "ITTrackingAction.hh"                    
 56 #include "ITTrackingInteractivity.hh"             
 57 #include "StackingAction.hh"                      
 58 #include "TimeStepAction.hh"                      
 59                                                   
 60 #include "G4DNAChemistryManager.hh"               
 61 #include "G4Scheduler.hh"                         
 62 #include "G4SystemOfUnits.hh"                     
 63 #include "G4Threading.hh"                         
 64 #include "G4UnitsTable.hh"                        
 65                                                   
 66 //....oooOO0OOooo........oooOO0OOooo........oo    
 67                                                   
 68 ActionInitialization::ActionInitialization(Det    
 69   : G4VUserActionInitialization(), fDetector(d    
 70 {}                                                
 71                                                   
 72 //....oooOO0OOooo........oooOO0OOooo........oo    
 73                                                   
 74 ActionInitialization::~ActionInitialization()     
 75                                                   
 76 //....oooOO0OOooo........oooOO0OOooo........oo    
 77                                                   
 78 void ActionInitialization::BuildForMaster() co    
 79 {                                                 
 80   // In MT mode, to be clearer, the RunAction     
 81   // be different than the one used for the wo    
 82   // This RunAction will be called before and     
 83   // workers.                                     
 84   // For more details, please refer to :          
 85   // https://twiki.cern.ch/twiki/bin/view/Gean    
 86   //                                              
 87                                                   
 88   SetUserAction(new RunAction(fDetector, 0));     
 89 }                                                 
 90                                                   
 91 //....oooOO0OOooo........oooOO0OOooo........oo    
 92                                                   
 93 void ActionInitialization::Build() const          
 94 {                                                 
 95   // G4cout << "Build for = "                     
 96   // << G4RunManager::GetRunManager()->GetRunM    
 97   // << G4endl;                                   
 98                                                   
 99   PrimaryGeneratorAction* kinematics = new Pri    
100   SetUserAction(kinematics);                      
101                                                   
102   TrackingAction* trackingAction = new Trackin    
103   SetUserAction(trackingAction);                  
104                                                   
105   RunAction* runAction = new RunAction(fDetect    
106   SetUserAction(runAction);                       
107                                                   
108   SetUserAction(new SteppingAction(runAction))    
109   SetUserAction(new EventAction(runAction));      
110   // added                                        
111   SetUserAction(new StackingAction());            
112                                                   
113   // chemistry part                               
114   if (G4DNAChemistryManager::IsActivated()) {     
115     G4Scheduler::Instance()->SetUserAction(new    
116                                                   
117     // Uncomment and set to stop chemistry sta    
118     // ...given number of time steps              
119     // G4Scheduler::Instance()->SetMaxNbSteps(    
120                                                   
121     // ...OR reaching this time                   
122     G4Scheduler::Instance()->SetEndTime(0.01 *    
123                                                   
124     G4Scheduler::Instance()->SetVerbose(1);  /    
125                                                   
126     ITTrackingInteractivity* itInteractivity =    
127     itInteractivity->SetUserAction(new ITStepp    
128     itInteractivity->SetUserAction(new ITTrack    
129     G4Scheduler::Instance()->SetInteractivity(    
130   }                                               
131   /*                                              
132     // To output the pre-chemical stage           
133     //                                            
134     G4String fileName ("output");                 
135                                                   
136     if(G4RunManager::GetRunManager()->GetRunMa    
137         G4RunManager::sequentialRM)               
138     {                                             
139       // write initial situation at 1 picoseco    
140       G4DNAChemistryManager::Instance()->Write    
141     }                                             
142     else                                          
143     {                                             
144       G4int id = G4Threading::G4GetThreadId();    
145                                                   
146       G4String fileName_mt = fileName;            
147       fileName_mt += G4UIcommand::ConvertToStr    
148       fileName_mt += ".txt";                      
149                                                   
150       G4cout << "chosen file name : " << fileN    
151                                                   
152       G4DNAChemistryManager::Instance()->Write    
153     }                                             
154   */                                              
155 }                                                 
156                                                   
157 //....oooOO0OOooo........oooOO0OOooo........oo    
158