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Geant4/examples/extended/medical/dna/dnaphysics/dnaphysics.cc

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Diff markup

Differences between /examples/extended/medical/dna/dnaphysics/dnaphysics.cc (Version 11.3.0) and /examples/extended/medical/dna/dnaphysics/dnaphysics.cc (Version 11.0.p4)


  1 //                                                  1 //
  2 // *******************************************      2 // ********************************************************************
  3 // * License and Disclaimer                         3 // * License and Disclaimer                                           *
  4 // *                                                4 // *                                                                  *
  5 // * The  Geant4 software  is  copyright of th      5 // * The  Geant4 software  is  copyright of the Copyright Holders  of *
  6 // * the Geant4 Collaboration.  It is provided      6 // * the Geant4 Collaboration.  It is provided  under  the terms  and *
  7 // * conditions of the Geant4 Software License      7 // * conditions of the Geant4 Software License,  included in the file *
  8 // * LICENSE and available at  http://cern.ch/      8 // * LICENSE and available at  http://cern.ch/geant4/license .  These *
  9 // * include a list of copyright holders.           9 // * include a list of copyright holders.                             *
 10 // *                                               10 // *                                                                  *
 11 // * Neither the authors of this software syst     11 // * Neither the authors of this software system, nor their employing *
 12 // * institutes,nor the agencies providing fin     12 // * institutes,nor the agencies providing financial support for this *
 13 // * work  make  any representation or  warran     13 // * work  make  any representation or  warranty, express or implied, *
 14 // * regarding  this  software system or assum     14 // * regarding  this  software system or assume any liability for its *
 15 // * use.  Please see the license in the file      15 // * use.  Please see the license in the file  LICENSE  and URL above *
 16 // * for the full disclaimer and the limitatio     16 // * for the full disclaimer and the limitation of liability.         *
 17 // *                                               17 // *                                                                  *
 18 // * This  code  implementation is the result      18 // * This  code  implementation is the result of  the  scientific and *
 19 // * technical work of the GEANT4 collaboratio     19 // * technical work of the GEANT4 collaboration.                      *
 20 // * By using,  copying,  modifying or  distri     20 // * By using,  copying,  modifying or  distributing the software (or *
 21 // * any work based  on the software)  you  ag     21 // * any work based  on the software)  you  agree  to acknowledge its *
 22 // * use  in  resulting  scientific  publicati     22 // * use  in  resulting  scientific  publications,  and indicate your *
 23 // * acceptance of all terms of the Geant4 Sof     23 // * acceptance of all terms of the Geant4 Software license.          *
 24 // *******************************************     24 // ********************************************************************
 25 //                                                 25 //
 26 // This example is provided by the Geant4-DNA      26 // This example is provided by the Geant4-DNA collaboration
 27 // Any report or published results obtained us     27 // Any report or published results obtained using the Geant4-DNA software
 28 // shall cite the following Geant4-DNA collabo <<  28 // shall cite the following Geant4-DNA collaboration publication:
 29 // Med. Phys. 45 (2018) e722-e739              << 
 30 // Phys. Med. 31 (2015) 861-874                << 
 31 // Med. Phys. 37 (2010) 4692-4708                  29 // Med. Phys. 37 (2010) 4692-4708
 32 // Int. J. Model. Simul. Sci. Comput. 1 (2010) << 
 33 //                                             << 
 34 // The Geant4-DNA web site is available at htt     30 // The Geant4-DNA web site is available at http://geant4-dna.org
 35 //                                                 31 //
                                                   >>  32 //
 36 /// \file dnaphysics.cc                            33 /// \file dnaphysics.cc
 37 /// \brief Implementation of the dnaphysics ex     34 /// \brief Implementation of the dnaphysics example
 38                                                <<  35 #include "G4Types.hh"
 39 #include "ActionInitialization.hh"             << 
 40 #include "DetectorConstruction.hh"             << 
 41 #include "PhysicsList.hh"                      << 
 42                                                    36 
 43 #include "G4RunManagerFactory.hh"                  37 #include "G4RunManagerFactory.hh"
 44 #include "G4Types.hh"                          <<  38 
 45 #include "G4UIExecutive.hh"                    << 
 46 #include "G4UImanager.hh"                          39 #include "G4UImanager.hh"
                                                   >>  40 #include "G4UIExecutive.hh"
 47 #include "G4VisExecutive.hh"                       41 #include "G4VisExecutive.hh"
 48                                                    42 
                                                   >>  43 #include "ActionInitialization.hh"
                                                   >>  44 #include "DetectorConstruction.hh"
                                                   >>  45 #include "PhysicsList.hh"
                                                   >>  46 
 49 //....oooOO0OOooo........oooOO0OOooo........oo     47 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
 50                                                    48 
 51 int main(int argc, char** argv)                <<  49 int main(int argc,char** argv)
 52 {                                                  50 {
 53   // Detect interactive mode (if no arguments)     51   // Detect interactive mode (if no arguments) and define UI session
 54   G4UIExecutive* ui = nullptr;                 <<  52   //
 55   if (argc == 1) {                             <<  53   G4UIExecutive* ui = 0;
                                                   >>  54   if ( argc == 1 ) {
 56     ui = new G4UIExecutive(argc, argv);            55     ui = new G4UIExecutive(argc, argv);
 57   }                                                56   }
 58                                                    57 
 59   // Construct the default run manager             58   // Construct the default run manager
                                                   >>  59 
 60   auto* runManager = G4RunManagerFactory::Crea     60   auto* runManager = G4RunManagerFactory::CreateRunManager();
 61   if (argc == 3)                               <<  61   if(argc==3) runManager->SetNumberOfThreads(atoi(argv[2]));
 62     runManager->SetNumberOfThreads(atoi(argv[2 <<  62   else runManager->SetNumberOfThreads(2);
 63   else                                         << 
 64     runManager->SetNumberOfThreads(2);         << 
 65                                                    63 
 66   // Set mandatory user initialization classes     64   // Set mandatory user initialization classes
 67   auto physlist = new PhysicsList();           <<  65   runManager->SetUserInitialization(new DetectorConstruction);
 68   runManager->SetUserInitialization(new Detect <<  66   runManager->SetUserInitialization(new PhysicsList);
 69   runManager->SetUserInitialization(physlist); << 
 70                                                    67 
 71   // User action initialization                    68   // User action initialization
 72   runManager->SetUserInitialization(new Action     69   runManager->SetUserInitialization(new ActionInitialization());
 73                                                    70 
 74   // Visualization                                 71   // Visualization
 75   G4VisExecutive* visManager = nullptr;        <<  72   G4VisManager* visManager = new G4VisExecutive;
                                                   >>  73   visManager->Initialize();
 76                                                    74 
 77   // Get the pointer to the User Interface man     75   // Get the pointer to the User Interface manager
 78   G4UImanager* UImanager = G4UImanager::GetUIp     76   G4UImanager* UImanager = G4UImanager::GetUIpointer();
 79   if (nullptr == ui) {                         <<  77 
 80     // Batch mode                              <<  78   // Process macro or start UI session
                                                   >>  79   //
                                                   >>  80   if (argc>1) {
                                                   >>  81     // batch mode
 81     G4String command = "/control/execute ";        82     G4String command = "/control/execute ";
 82     G4String fileName = argv[1];                   83     G4String fileName = argv[1];
 83     UImanager->ApplyCommand(command + fileName <<  84     UImanager->ApplyCommand(command+fileName);
 84   }                                                85   }
 85   else {                                           86   else {
 86     visManager = new G4VisExecutive;           <<  87     // interactive mode
 87     visManager->Initialize();                  << 
 88     UImanager->ApplyCommand("/control/execute      88     UImanager->ApplyCommand("/control/execute vis.mac");
 89     ui->SessionStart();                            89     ui->SessionStart();
 90     delete ui;                                     90     delete ui;
 91     delete visManager;                         << 
 92   }                                                91   }
                                                   >>  92 
                                                   >>  93   delete visManager;
 93   delete runManager;                               94   delete runManager;
                                                   >>  95 
 94   return 0;                                        96   return 0;
 95 }                                                  97 }
 96                                                    98