Geant4 Cross Reference

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Geant4/examples/extended/medical/dna/dnadamage2/src/RunAction.cc

Version: [ ReleaseNotes ] [ 1.0 ] [ 1.1 ] [ 2.0 ] [ 3.0 ] [ 3.1 ] [ 3.2 ] [ 4.0 ] [ 4.0.p1 ] [ 4.0.p2 ] [ 4.1 ] [ 4.1.p1 ] [ 5.0 ] [ 5.0.p1 ] [ 5.1 ] [ 5.1.p1 ] [ 5.2 ] [ 5.2.p1 ] [ 5.2.p2 ] [ 6.0 ] [ 6.0.p1 ] [ 6.1 ] [ 6.2 ] [ 6.2.p1 ] [ 6.2.p2 ] [ 7.0 ] [ 7.0.p1 ] [ 7.1 ] [ 7.1.p1 ] [ 8.0 ] [ 8.0.p1 ] [ 8.1 ] [ 8.1.p1 ] [ 8.1.p2 ] [ 8.2 ] [ 8.2.p1 ] [ 8.3 ] [ 8.3.p1 ] [ 8.3.p2 ] [ 9.0 ] [ 9.0.p1 ] [ 9.0.p2 ] [ 9.1 ] [ 9.1.p1 ] [ 9.1.p2 ] [ 9.1.p3 ] [ 9.2 ] [ 9.2.p1 ] [ 9.2.p2 ] [ 9.2.p3 ] [ 9.2.p4 ] [ 9.3 ] [ 9.3.p1 ] [ 9.3.p2 ] [ 9.4 ] [ 9.4.p1 ] [ 9.4.p2 ] [ 9.4.p3 ] [ 9.4.p4 ] [ 9.5 ] [ 9.5.p1 ] [ 9.5.p2 ] [ 9.6 ] [ 9.6.p1 ] [ 9.6.p2 ] [ 9.6.p3 ] [ 9.6.p4 ] [ 10.0 ] [ 10.0.p1 ] [ 10.0.p2 ] [ 10.0.p3 ] [ 10.0.p4 ] [ 10.1 ] [ 10.1.p1 ] [ 10.1.p2 ] [ 10.1.p3 ] [ 10.2 ] [ 10.2.p1 ] [ 10.2.p2 ] [ 10.2.p3 ] [ 10.3 ] [ 10.3.p1 ] [ 10.3.p2 ] [ 10.3.p3 ] [ 10.4 ] [ 10.4.p1 ] [ 10.4.p2 ] [ 10.4.p3 ] [ 10.5 ] [ 10.5.p1 ] [ 10.6 ] [ 10.6.p1 ] [ 10.6.p2 ] [ 10.6.p3 ] [ 10.7 ] [ 10.7.p1 ] [ 10.7.p2 ] [ 10.7.p3 ] [ 10.7.p4 ] [ 11.0 ] [ 11.0.p1 ] [ 11.0.p2 ] [ 11.0.p3, ] [ 11.0.p4 ] [ 11.1 ] [ 11.1.1 ] [ 11.1.2 ] [ 11.1.3 ] [ 11.2 ] [ 11.2.1 ] [ 11.2.2 ] [ 11.3.0 ]

Diff markup

Differences between /examples/extended/medical/dna/dnadamage2/src/RunAction.cc (Version 11.3.0) and /examples/extended/medical/dna/dnadamage2/src/RunAction.cc (Version 5.2.p2)


  1 //                                                  1 
  2 // *******************************************    
  3 // * License and Disclaimer                       
  4 // *                                              
  5 // * The  Geant4 software  is  copyright of th    
  6 // * the Geant4 Collaboration.  It is provided    
  7 // * conditions of the Geant4 Software License    
  8 // * LICENSE and available at  http://cern.ch/    
  9 // * include a list of copyright holders.         
 10 // *                                              
 11 // * Neither the authors of this software syst    
 12 // * institutes,nor the agencies providing fin    
 13 // * work  make  any representation or  warran    
 14 // * regarding  this  software system or assum    
 15 // * use.  Please see the license in the file     
 16 // * for the full disclaimer and the limitatio    
 17 // *                                              
 18 // * This  code  implementation is the result     
 19 // * technical work of the GEANT4 collaboratio    
 20 // * By using,  copying,  modifying or  distri    
 21 // * any work based  on the software)  you  ag    
 22 // * use  in  resulting  scientific  publicati    
 23 // * acceptance of all terms of the Geant4 Sof    
 24 // *******************************************    
 25 //                                                
 26 // This example is provided by the Geant4-DNA     
 27 // dnadamage3 example is derived from the chem    
 28 // chem6 example authors: W. G. Shin and S. In    
 29 //                                                
 30 // Any report or published results obtained us    
 31 // shall cite the following Geant4-DNA collabo    
 32 // J. Appl. Phys. 125 (2019) 104301               
 33 // Med. Phys. 45 (2018) e722-e739                 
 34 // J. Comput. Phys. 274 (2014) 841-882            
 35 // Med. Phys. 37 (2010) 4692-4708                 
 36 // Int. J. Model. Simul. Sci. Comput. 1 (2010)    
 37 // The Geant4-DNA web site is available at htt    
 38 //                                                
 39 // Authors: J. Naoki D. Kondo (UCSF, US)          
 40 //          J. Ramos-Mendez and B. Faddegon (U    
 41 //                                                
 42 //                                                
 43 /// \file RunAction.cc                            
 44 /// \brief Implementation of the RunAction cla    
 45                                                   
 46 #include "RunAction.hh"                           
 47                                                   
 48 #include "Run.hh"                                 
 49                                                   
 50 #include "G4Run.hh"                               
 51 #include "G4RunManager.hh"                        
 52 #include "G4SystemOfUnits.hh"                     
 53 #include "G4UnitsTable.hh"                        
 54                                                   
 55 //....oooOO0OOooo........oooOO0OOooo........oo    
 56                                                   
 57 RunAction::RunAction() : G4UserRunAction() {}     
 58                                                   
 59 //....oooOO0OOooo........oooOO0OOooo........oo    
 60                                                   
 61 G4Run* RunAction::GenerateRun()                   
 62 {                                                 
 63   Run* run = new Run();                           
 64   return run;                                     
 65 }                                                 
 66                                                   
 67 //....oooOO0OOooo........oooOO0OOooo........oo    
 68                                                   
 69 void RunAction::BeginOfRunAction(const G4Run*)    
 70 {                                                 
 71   // informs the runManager to save random num    
 72   G4RunManager::GetRunManager()->SetRandomNumb    
 73 }                                                 
 74                                                   
 75 //....oooOO0OOooo........oooOO0OOooo........oo    
 76                                                   
 77 void RunAction::EndOfRunAction(const G4Run* ru    
 78 {                                                 
 79   G4int nofEvents = run->GetNumberOfEvent();      
 80   if (nofEvents == 0) return;                     
 81                                                   
 82   // results                                      
 83   //                                              
 84   const Run* dnadamage3Run = static_cast<const    
 85   G4double sumDose = dnadamage3Run->GetSumDose    
 86                                                   
 87   // print                                        
 88   //                                              
 89   if (IsMaster()) {                               
 90     G4cout << G4endl << "--------------------E    
 91            << "  The run has " << nofEvents <<    
 92                                                   
 93     ScoreSpecies* masterScorer = dynamic_cast<    
 94                                                   
 95     ScoreStrandBreaks* masterSBScorer =           
 96       dynamic_cast<ScoreStrandBreaks*>(dnadama    
 97                                                   
 98     G4cout << "Number of events recorded by th    
 99            << masterScorer->GetNumberOfRecorde    
100                                                   
101     // LET                                        
102     Run* aRun = (Run*)run;                        
103     G4THitsMap<G4double>* totLET = aRun->GetLE    
104     G4int nOfEvent = totLET->entries();           
105     G4double LET_mean = 0;                        
106     G4double LET_square = 0;                      
107     for (G4int i = 0; i < nOfEvent; i++) {        
108       G4double* LET = (*totLET)[i];               
109       if (!LET) continue;                         
110       LET_mean += *LET;                           
111       LET_square += (*LET) * (*LET);              
112     }                                             
113     LET_mean /= nOfEvent;                         
114     LET_square = std::sqrt(LET_square / nOfEve    
115                                                   
116     masterScorer->OutputAndClear();               
117     masterSBScorer->OutputAndClear(LET_mean, L    
118   }                                               
119   else {                                          
120     G4cout << G4endl << "--------------------E    
121            << "  The run has " << nofEvents <<    
122   }                                               
123                                                   
124   G4cout << " Total energy deposited in the wo    
125          << " --------------------------------    
126 }                                                 
127                                                   
128 //....oooOO0OOooo........oooOO0OOooo........oo    
129