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1 // 1 //
2 // ******************************************* 2 // ********************************************************************
3 // * License and Disclaimer 3 // * License and Disclaimer *
4 // * 4 // * *
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18 // * This code implementation is the result 18 // * This code implementation is the result of the scientific and *
19 // * technical work of the GEANT4 collaboratio 19 // * technical work of the GEANT4 collaboration. *
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24 // ******************************************* 24 // ********************************************************************
25 // 25 //
26 // This example is provided by the Geant4-DNA 26 // This example is provided by the Geant4-DNA collaboration
27 // dnadamage3 example is derived from the chem 27 // dnadamage3 example is derived from the chem6 example
28 // chem6 example authors: W. G. Shin and S. In 28 // chem6 example authors: W. G. Shin and S. Incerti (CENBG, France)
29 // 29 //
30 // Any report or published results obtained us 30 // Any report or published results obtained using the Geant4-DNA software
31 // shall cite the following Geant4-DNA collabo 31 // shall cite the following Geant4-DNA collaboration publication:
32 // J. Appl. Phys. 125 (2019) 104301 32 // J. Appl. Phys. 125 (2019) 104301
33 // Med. Phys. 45 (2018) e722-e739 33 // Med. Phys. 45 (2018) e722-e739
34 // J. Comput. Phys. 274 (2014) 841-882 34 // J. Comput. Phys. 274 (2014) 841-882
35 // Med. Phys. 37 (2010) 4692-4708 35 // Med. Phys. 37 (2010) 4692-4708
36 // Int. J. Model. Simul. Sci. Comput. 1 (2010) 36 // Int. J. Model. Simul. Sci. Comput. 1 (2010) 157-178
37 // The Geant4-DNA web site is available at htt 37 // The Geant4-DNA web site is available at http://geant4-dna.org
38 // 38 //
39 // Authors: J. Naoki D. Kondo (UCSF, US) 39 // Authors: J. Naoki D. Kondo (UCSF, US)
40 // J. Ramos-Mendez and B. Faddegon (U 40 // J. Ramos-Mendez and B. Faddegon (UCSF, US)
41 // 41 //
42 // 42 //
43 /// \file RunAction.cc 43 /// \file RunAction.cc
44 /// \brief Implementation of the RunAction cla 44 /// \brief Implementation of the RunAction class
45 45
46 #include "RunAction.hh" 46 #include "RunAction.hh"
47 <<
48 #include "Run.hh" 47 #include "Run.hh"
49 48
50 #include "G4Run.hh" 49 #include "G4Run.hh"
51 #include "G4RunManager.hh" 50 #include "G4RunManager.hh"
52 #include "G4SystemOfUnits.hh" <<
53 #include "G4UnitsTable.hh" 51 #include "G4UnitsTable.hh"
>> 52 #include "G4SystemOfUnits.hh"
54 53
55 //....oooOO0OOooo........oooOO0OOooo........oo 54 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo.....
56 55
57 RunAction::RunAction() : G4UserRunAction() {} << 56 RunAction::RunAction()
>> 57 : G4UserRunAction()
>> 58 {
>> 59 }
58 60
59 //....oooOO0OOooo........oooOO0OOooo........oo 61 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo.....
60 62
61 G4Run* RunAction::GenerateRun() 63 G4Run* RunAction::GenerateRun()
62 { 64 {
63 Run* run = new Run(); 65 Run* run = new Run();
64 return run; 66 return run;
65 } 67 }
66 68
67 //....oooOO0OOooo........oooOO0OOooo........oo 69 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo.....
68 70
69 void RunAction::BeginOfRunAction(const G4Run*) 71 void RunAction::BeginOfRunAction(const G4Run*)
70 { 72 {
71 // informs the runManager to save random num 73 // informs the runManager to save random number seed
72 G4RunManager::GetRunManager()->SetRandomNumb 74 G4RunManager::GetRunManager()->SetRandomNumberStore(false);
73 } 75 }
74 76
75 //....oooOO0OOooo........oooOO0OOooo........oo 77 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo.....
76 78
77 void RunAction::EndOfRunAction(const G4Run* ru 79 void RunAction::EndOfRunAction(const G4Run* run)
78 { 80 {
79 G4int nofEvents = run->GetNumberOfEvent(); 81 G4int nofEvents = run->GetNumberOfEvent();
80 if (nofEvents == 0) return; 82 if (nofEvents == 0) return;
81 83
82 // results 84 // results
83 // 85 //
84 const Run* dnadamage3Run = static_cast<const 86 const Run* dnadamage3Run = static_cast<const Run*>(run);
85 G4double sumDose = dnadamage3Run->GetSumDose << 87 G4double sumDose = dnadamage3Run->GetSumDose();
86 88
87 // print 89 // print
88 // 90 //
89 if (IsMaster()) { << 91 if (IsMaster())
90 G4cout << G4endl << "--------------------E << 92 {
91 << " The run has " << nofEvents << << 93
>> 94 G4cout
>> 95 << G4endl
>> 96 << "--------------------End of Global Run-----------------------"
>> 97 << G4endl
>> 98 << " The run has " << nofEvents << " events "
>> 99 << G4endl;
92 100
93 ScoreSpecies* masterScorer = dynamic_cast< << 101 ScoreSpecies* masterScorer=
>> 102 dynamic_cast<ScoreSpecies*>(dnadamage3Run->GetPrimitiveScorer());
94 103
95 ScoreStrandBreaks* masterSBScorer = << 104 ScoreStrandBreaks* masterSBScorer=
96 dynamic_cast<ScoreStrandBreaks*>(dnadama 105 dynamic_cast<ScoreStrandBreaks*>(dnadamage3Run->GetSBScorer());
97 106
98 G4cout << "Number of events recorded by th 107 G4cout << "Number of events recorded by the species scorer = "
99 << masterScorer->GetNumberOfRecorde << 108 << masterScorer->GetNumberOfRecordedEvents()
>> 109 << G4endl;
100 110
101 // LET 111 // LET
102 Run* aRun = (Run*)run; 112 Run* aRun = (Run*)run;
103 G4THitsMap<G4double>* totLET = aRun->GetLE 113 G4THitsMap<G4double>* totLET = aRun->GetLET();
104 G4int nOfEvent = totLET->entries(); 114 G4int nOfEvent = totLET->entries();
105 G4double LET_mean = 0; 115 G4double LET_mean = 0;
106 G4double LET_square = 0; 116 G4double LET_square = 0;
107 for (G4int i = 0; i < nOfEvent; i++) { << 117 for(G4int i=0;i<nOfEvent;i++){
108 G4double* LET = (*totLET)[i]; 118 G4double* LET = (*totLET)[i];
109 if (!LET) continue; << 119 if(!LET) continue;
110 LET_mean += *LET; 120 LET_mean += *LET;
111 LET_square += (*LET) * (*LET); << 121 LET_square += (*LET)*(*LET);
112 } 122 }
113 LET_mean /= nOfEvent; 123 LET_mean /= nOfEvent;
114 LET_square = std::sqrt(LET_square / nOfEve << 124 LET_square = std::sqrt(LET_square/nOfEvent - std::pow(LET_mean,2));
115 125
116 masterScorer->OutputAndClear(); 126 masterScorer->OutputAndClear();
117 masterSBScorer->OutputAndClear(LET_mean, L << 127 masterSBScorer->OutputAndClear(LET_mean,LET_square);
>> 128
118 } 129 }
119 else { << 130 else
120 G4cout << G4endl << "--------------------E << 131 {
121 << " The run has " << nofEvents << << 132 G4cout
>> 133 << G4endl
>> 134 << "--------------------End of Local Run------------------------"
>> 135 << G4endl
>> 136 << " The run has " << nofEvents << " events"
>> 137 << G4endl;
122 } 138 }
123 139
124 G4cout << " Total energy deposited in the wo << 140 G4cout
125 << " -------------------------------- << 141 << " Total energy deposited in the world volume : "
>> 142 << sumDose/eV << " eV"
>> 143 << G4endl
>> 144 << " ------------------------------------------------------------"
>> 145 << G4endl
>> 146 << G4endl;
126 } 147 }
127 148
128 //....oooOO0OOooo........oooOO0OOooo........oo 149 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo.....
129 150