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25 // 25 //
26 // 26 //
27 // Authors: J. Naoki D. Kondo (UCSF, US) 27 // Authors: J. Naoki D. Kondo (UCSF, US)
28 // J. Ramos-Mendez and B. Faddegon (U 28 // J. Ramos-Mendez and B. Faddegon (UCSF, US)
29 // 29 //
30 // 30 //
31 /// \file PlasmidMolecules.cc 31 /// \file PlasmidMolecules.cc
32 /// \brief Implementation of the additional Pl 32 /// \brief Implementation of the additional Plasmid DNA molecules
33 33
34 #include "PlasmidMolecules.hh" 34 #include "PlasmidMolecules.hh"
35 <<
36 #include "G4ParticleTable.hh" <<
37 #include "G4PhysicalConstants.hh" 35 #include "G4PhysicalConstants.hh"
38 #include "G4SystemOfUnits.hh" 36 #include "G4SystemOfUnits.hh"
>> 37 #include "G4ParticleTable.hh"
39 38
40 //....oooOO0OOooo........oooOO0OOooo........oo 39 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo.....
41 // Deoxyribose 40 // Deoxyribose
42 41
43 G4DNA_Deoxyribose* G4DNA_Deoxyribose::fDeoxyri 42 G4DNA_Deoxyribose* G4DNA_Deoxyribose::fDeoxyriboseInstance = 0;
44 G4DNA_Deoxyribose* G4DNA_Deoxyribose::Definiti 43 G4DNA_Deoxyribose* G4DNA_Deoxyribose::Definition()
45 { 44 {
>> 45
46 if (fDeoxyriboseInstance != 0) return fDeoxy 46 if (fDeoxyriboseInstance != 0) return fDeoxyriboseInstance;
47 const G4String name = "DNA_Deoxyribose"; 47 const G4String name = "DNA_Deoxyribose";
48 48
49 G4ParticleTable* pTable = G4ParticleTable::G 49 G4ParticleTable* pTable = G4ParticleTable::GetParticleTable();
50 G4ParticleDefinition* anInstance = pTable->F 50 G4ParticleDefinition* anInstance = pTable->FindParticle(name);
51 if (anInstance == 0) { 51 if (anInstance == 0) {
52 const G4String formatedName = "DNA_Deoxy^{ 52 const G4String formatedName = "DNA_Deoxy^{0}";
53 53
54 G4double mass = 31.99546 * g / Avogadro * 54 G4double mass = 31.99546 * g / Avogadro * c_squared;
55 anInstance = << 55 anInstance = new G4MoleculeDefinition(name, mass, 1e-150 * (m * m / s), 0, 0,
56 new G4MoleculeDefinition(name, mass, 1e- << 56 1.7 * angstrom, 2);
57 57
58 ((G4MoleculeDefinition*)anInstance)->SetLe << 58 ((G4MoleculeDefinition*) anInstance)->SetLevelOccupation(0);
59 ((G4MoleculeDefinition*)anInstance)->SetFo << 59 ((G4MoleculeDefinition*) anInstance)->SetFormatedName(formatedName);
60 } 60 }
61 fDeoxyriboseInstance = static_cast<G4DNA_Deo 61 fDeoxyriboseInstance = static_cast<G4DNA_Deoxyribose*>(anInstance);
62 return fDeoxyriboseInstance; 62 return fDeoxyriboseInstance;
63 } 63 }
64 64
65 //....oooOO0OOooo........oooOO0OOooo........oo 65 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo.....
66 // OH_Damamged_Deoxyribose 66 // OH_Damamged_Deoxyribose
67 67
68 G4DNA_DamagedDeoxyriboseOH* G4DNA_DamagedDeoxy << 68 G4DNA_DamagedDeoxyriboseOH*
>> 69 G4DNA_DamagedDeoxyriboseOH::fDamagedDeoxyriboseOHInstance = 0;
69 G4DNA_DamagedDeoxyriboseOH* G4DNA_DamagedDeoxy 70 G4DNA_DamagedDeoxyriboseOH* G4DNA_DamagedDeoxyriboseOH::Definition()
70 { 71 {
71 if (fDamagedDeoxyriboseOHInstance != 0) retu 72 if (fDamagedDeoxyriboseOHInstance != 0) return fDamagedDeoxyriboseOHInstance;
72 const G4String name = "DNA_DamagedDeoxyribos 73 const G4String name = "DNA_DamagedDeoxyriboseOH";
73 74
74 G4ParticleTable* pTable = G4ParticleTable::G 75 G4ParticleTable* pTable = G4ParticleTable::GetParticleTable();
75 G4ParticleDefinition* anInstance = pTable->F 76 G4ParticleDefinition* anInstance = pTable->FindParticle(name);
76 if (anInstance == 0) { 77 if (anInstance == 0) {
77 const G4String formatedName = "DamagedDeox 78 const G4String formatedName = "DamagedDeoxyriboseOH^{0}";
78 79
79 G4double mass = 31.99546 * g / Avogadro * 80 G4double mass = 31.99546 * g / Avogadro * c_squared;
80 anInstance = << 81 anInstance = new G4MoleculeDefinition(name, mass, 1e-150 * (m * m / s), 0, 0,
81 new G4MoleculeDefinition(name, mass, 1e- << 82 1.7 * angstrom, 2);
82 83
83 ((G4MoleculeDefinition*)anInstance)->SetLe << 84 ((G4MoleculeDefinition*) anInstance)->SetLevelOccupation(0);
84 ((G4MoleculeDefinition*)anInstance)->SetFo << 85 ((G4MoleculeDefinition*) anInstance)->SetFormatedName(formatedName);
85 } 86 }
86 fDamagedDeoxyriboseOHInstance = static_cast< << 87 fDamagedDeoxyriboseOHInstance =
>> 88 static_cast<G4DNA_DamagedDeoxyriboseOH*>(anInstance);
87 return fDamagedDeoxyriboseOHInstance; 89 return fDamagedDeoxyriboseOHInstance;
88 } 90 }
89 91
90 //....oooOO0OOooo........oooOO0OOooo........oo 92 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo.....
91 // H_Damamged_Deoxyribose 93 // H_Damamged_Deoxyribose
92 94
93 G4DNA_DamagedDeoxyriboseH* G4DNA_DamagedDeoxyr << 95 G4DNA_DamagedDeoxyriboseH*
>> 96 G4DNA_DamagedDeoxyriboseH::fDamagedDeoxyriboseHInstance = 0;
94 G4DNA_DamagedDeoxyriboseH* G4DNA_DamagedDeoxyr 97 G4DNA_DamagedDeoxyriboseH* G4DNA_DamagedDeoxyriboseH::Definition()
95 { 98 {
96 if (fDamagedDeoxyriboseHInstance != 0) retur 99 if (fDamagedDeoxyriboseHInstance != 0) return fDamagedDeoxyriboseHInstance;
97 const G4String name = "DNA_DamagedDeoxyribos 100 const G4String name = "DNA_DamagedDeoxyriboseH";
98 101
99 G4ParticleTable* pTable = G4ParticleTable::G 102 G4ParticleTable* pTable = G4ParticleTable::GetParticleTable();
100 G4ParticleDefinition* anInstance = pTable->F 103 G4ParticleDefinition* anInstance = pTable->FindParticle(name);
101 if (anInstance == 0) { 104 if (anInstance == 0) {
102 const G4String formatedName = "DamagedDeox 105 const G4String formatedName = "DamagedDeoxyriboseH^{0}";
103 106
104 G4double mass = 31.99546 * g / Avogadro * 107 G4double mass = 31.99546 * g / Avogadro * c_squared;
105 anInstance = << 108 anInstance = new G4MoleculeDefinition(name, mass, 1e-150 * (m * m / s), 0, 0,
106 new G4MoleculeDefinition(name, mass, 1e- << 109 1.7 * angstrom, 2);
107 110
108 ((G4MoleculeDefinition*)anInstance)->SetLe << 111 ((G4MoleculeDefinition*) anInstance)->SetLevelOccupation(0);
109 ((G4MoleculeDefinition*)anInstance)->SetFo << 112 ((G4MoleculeDefinition*) anInstance)->SetFormatedName(formatedName);
110 } 113 }
111 fDamagedDeoxyriboseHInstance = static_cast<G << 114 fDamagedDeoxyriboseHInstance =
>> 115 static_cast<G4DNA_DamagedDeoxyriboseH*>(anInstance);
112 return fDamagedDeoxyriboseHInstance; 116 return fDamagedDeoxyriboseHInstance;
113 } 117 }
114 118
115 //....oooOO0OOooo........oooOO0OOooo........oo 119 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo.....
116 // Eaq_Damamged_Deoxyribose 120 // Eaq_Damamged_Deoxyribose
117 121
118 G4DNA_DamagedDeoxyriboseEAQ* G4DNA_DamagedDeox << 122 G4DNA_DamagedDeoxyriboseEAQ*
>> 123 G4DNA_DamagedDeoxyriboseEAQ::fDamagedDeoxyriboseEAQInstance = 0;
119 G4DNA_DamagedDeoxyriboseEAQ* G4DNA_DamagedDeox 124 G4DNA_DamagedDeoxyriboseEAQ* G4DNA_DamagedDeoxyriboseEAQ::Definition()
120 { 125 {
121 if (fDamagedDeoxyriboseEAQInstance != 0) ret 126 if (fDamagedDeoxyriboseEAQInstance != 0) return fDamagedDeoxyriboseEAQInstance;
122 const G4String name = "DNA_DamagedDeoxyribos 127 const G4String name = "DNA_DamagedDeoxyriboseEAQ";
123 // search in particle table] 128 // search in particle table]
124 G4ParticleTable* pTable = G4ParticleTable::G 129 G4ParticleTable* pTable = G4ParticleTable::GetParticleTable();
125 G4ParticleDefinition* anInstance = pTable->F 130 G4ParticleDefinition* anInstance = pTable->FindParticle(name);
126 if (anInstance == 0) { 131 if (anInstance == 0) {
127 const G4String formatedName = "DamagedDeox 132 const G4String formatedName = "DamagedDeoxyriboseEAQ^{0}";
128 133
129 G4double mass = 31.99546 * g / Avogadro * 134 G4double mass = 31.99546 * g / Avogadro * c_squared;
130 anInstance = << 135 anInstance = new G4MoleculeDefinition(name, mass, 1e-150 * (m * m / s), 0, 0,
131 new G4MoleculeDefinition(name, mass, 1e- << 136 1.7 * angstrom, 2);
132 137
133 ((G4MoleculeDefinition*)anInstance)->SetLe << 138 ((G4MoleculeDefinition*) anInstance)->SetLevelOccupation(0);
134 ((G4MoleculeDefinition*)anInstance)->SetFo << 139 ((G4MoleculeDefinition*) anInstance)->SetFormatedName(formatedName);
135 } 140 }
136 fDamagedDeoxyriboseEAQInstance = static_cast << 141 fDamagedDeoxyriboseEAQInstance =
>> 142 static_cast<G4DNA_DamagedDeoxyriboseEAQ*>(anInstance);
137 return fDamagedDeoxyriboseEAQInstance; 143 return fDamagedDeoxyriboseEAQInstance;
138 } 144 }
139 145
140 //....oooOO0OOooo........oooOO0OOooo........oo 146 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo.....
141 147